BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 6293482.2.1
         (2042 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AU235570.1|AU235570  AU235570 RAFL14 Arabidopsis thaliana...    42   0.37 
gb|BT004563.1|  Arabidopsis thaliana At2g18100 gene, complet...    42   0.37 
gb|AC006201.4|  Arabidopsis thaliana chromosome 2 clone T27K...    42   0.37 
ref|NM_127366.3|  Arabidopsis thaliana unknown protein AT2G1...    42   0.37 
ref|NC_003071.3|  Arabidopsis thaliana chromosome 2, complet...    42   0.37 

>gb|AU235570.1|AU235570 AU235570 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-22-O18 5',
           mRNA sequence
          Length = 633

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 247 cattgcactagtatcatcatcatcatcac 275
           |||| |||||| |||||||||||||||||
Sbjct: 461 catttcactagaatcatcatcatcatcac 433



>gb|BT004563.1| Arabidopsis thaliana At2g18100 gene, complete cds
          Length = 1971

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 247 cattgcactagtatcatcatcatcatcac 275
           |||| |||||| |||||||||||||||||
Sbjct: 360 catttcactagaatcatcatcatcatcac 332



>gb|AC006201.4| Arabidopsis thaliana chromosome 2 clone T27K22 map c245, complete
            sequence
          Length = 88149

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 247  cattgcactagtatcatcatcatcatcac 275
            |||| |||||| |||||||||||||||||
Sbjct: 7419 catttcactagaatcatcatcatcatcac 7447



>ref|NM_127366.3| Arabidopsis thaliana unknown protein AT2G18100 mRNA, complete cds
          Length = 2377

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 247 cattgcactagtatcatcatcatcatcac 275
           |||| |||||| |||||||||||||||||
Sbjct: 461 catttcactagaatcatcatcatcatcac 433



>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
          Length = 19705359

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 247     cattgcactagtatcatcatcatcatcac 275
               |||| |||||| |||||||||||||||||
Sbjct: 7875552 catttcactagaatcatcatcatcatcac 7875524



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 800,556
Number of Sequences: 1013581
Number of extensions: 800556
Number of successful extensions: 95371
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94928
Number of HSP's gapped (non-prelim): 420
length of query: 2042
length of database: 908,940,872
effective HSP length: 21
effective length of query: 2021
effective length of database: 887,655,671
effective search space: 1793952111091
effective search space used: 1793952111091
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)