BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5735869.2.1
(539 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CR400827.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.096
dbj|AB020751.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.096
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 42 0.096
gb|CL508846.1|CL508846 SAIL_803_C08.v1 SAIL Collection Arab... 40 0.38
emb|AL765852.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.38
dbj|AP000420.1| Arabidopsis thaliana genomic DNA, chromosom... 40 0.38
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 40 0.38
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 40 0.38
>emb|CR400827.1| Arabidopsis thaliana T-DNA flanking sequence GK-840D03-025828,
genomic survey sequence
Length = 442
Score = 42.1 bits (21), Expect = 0.096
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 67 aatataacttttctattcaattttg 91
|||||| ||||||||||||||||||
Sbjct: 173 aatatatcttttctattcaattttg 149
>dbj|AB020751.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRG21
Length = 55151
Score = 42.1 bits (21), Expect = 0.096
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 67 aatataacttttctattcaattttg 91
|||||| ||||||||||||||||||
Sbjct: 4742 aatatatcttttctattcaattttg 4718
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 42.1 bits (21), Expect = 0.096
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 67 aatataacttttctattcaattttg 91
|||||| ||||||||||||||||||
Sbjct: 25152181 aatatatcttttctattcaattttg 25152157
>gb|CL508846.1|CL508846 SAIL_803_C08.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_803_C08.v1, DNA sequence
Length = 881
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 121 ccctccaatccccttctccc 140
||||||||||||||||||||
Sbjct: 524 ccctccaatccccttctccc 543
>emb|AL765852.1| Arabidopsis thaliana T-DNA flanking sequence GK-144B12-012978,
genomic survey sequence
Length = 128
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 329 atgctcctgcaacatgttgc 348
||||||||||||||||||||
Sbjct: 89 atgctcctgcaacatgttgc 70
>dbj|AP000420.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MZN14
Length = 82890
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 329 atgctcctgcaacatgttgc 348
||||||||||||||||||||
Sbjct: 9304 atgctcctgcaacatgttgc 9285
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 329 atgctcctgcaacatgttgc 348
||||||||||||||||||||
Sbjct: 10631068 atgctcctgcaacatgttgc 10631049
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 329 atgctcctgcaacatgttgc 348
||||||||||||||||||||
Sbjct: 10707974 atgctcctgcaacatgttgc 10707955
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 407,284
Number of Sequences: 1013581
Number of extensions: 407284
Number of successful extensions: 25980
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25608
Number of HSP's gapped (non-prelim): 372
length of query: 539
length of database: 908,940,872
effective HSP length: 20
effective length of query: 519
effective length of database: 888,669,252
effective search space: 461219341788
effective search space used: 461219341788
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)