BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704661.2.1
(798 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY056202.1| Arabidopsis thaliana unknown protein (At5g47... 66 1e-008
gb|AY091394.1| Arabidopsis thaliana unknown protein (At5g47... 66 1e-008
emb|BX831422.1|CNS09ZHW Arabidopsis thaliana Full-length cD... 66 1e-008
emb|BX832170.1|CNS09ZMF Arabidopsis thaliana Full-length cD... 66 1e-008
dbj|AB016886.1| Arabidopsis thaliana genomic DNA, chromosom... 66 1e-008
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 66 1e-008
ref|NM_124152.2| Arabidopsis thaliana transferase, transfer... 66 1e-008
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 66 1e-008
gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasi... 54 4e-005
emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequenc... 52 1e-004
gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudo... 52 1e-004
gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudo... 52 1e-004
gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasi... 52 1e-004
emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequenc... 50 6e-004
gb|AI994533.1|AI994533 701498530 A. thaliana, Ohio State cl... 50 6e-004
gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Rev... 50 6e-004
gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Rev... 50 6e-004
gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Rev... 50 6e-004
gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasit... 50 6e-004
gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone poo... 50 6e-004
gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone poo... 50 6e-004
gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone poo... 50 6e-004
gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasi... 50 6e-004
gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasi... 50 6e-004
emb|AX507774.1| Sequence 2469 from Patent WO0216655 50 6e-004
gb|CB074186.1|CB074186 EST02508 Early Ovule Development For... 48 0.002
gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasi... 48 0.002
gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG... 48 0.002
emb|AX505609.1| Sequence 304 from Patent WO0216655 48 0.002
gb|CB185793.2|CB185793 EST00720 Arabidopsis avirulent Pseud... 46 0.009
gb|CB185942.1|CB185942 EST01133 Arabidopsis virulent Pseudo... 46 0.009
gb|CB185943.1|CB185943 EST01134 Arabidopsis virulent Pseudo... 46 0.009
gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasi... 46 0.009
gb|U58918.1|ATU58918 Arabidopsis thaliana MEK kinase (MAP3K... 46 0.009
emb|AJ010090.1|ATH010090 Arabidopsis thaliana mRNA for MAP3... 46 0.009
emb|CS137270.1| Sequence 241 from Patent WO2005047516 46 0.009
emb|AJ595464.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.037
emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.037
gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone For... 44 0.037
gb|CF772990.1|CF772990 AG_FSL_10G03 Arabidopsis ag-1 35S:AG... 44 0.037
emb|AJ836963.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.037
emb|AJ837256.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.037
emb|AJ840712.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.037
emb|AJ272202.1|ATH272202 Arabidopsis thaliana mRNA for mito... 44 0.037
emb|AJ293797.1|ATH293797 Arabidopsis thaliana mRNA for SC35... 44 0.037
>gb|AY056202.1| Arabidopsis thaliana unknown protein (At5g47780) mRNA, complete cds
Length = 2084
Score = 65.9 bits (33), Expect = 1e-008
Identities = 138/173 (79%)
Strand = Plus / Minus
Query: 463 tgataaatttcagttatgttctgccgcctccattcagccaggtcaaacacattcattcca 522
||||||| ||| || ||||| |||| | |||||||| |||| ||||| |||||||| |||
Sbjct: 1624 tgataaacttctgtgatgttttgcctcttccattcatccagatcaaagacattcatacca 1565
Query: 523 aaagcccaaacacaagcatgtgggtcaaaactcttggtgataatgggatttgaaaaattc 582
| |||||| ||||||| | |||||||| |||||| || | |||||||| || |||
Sbjct: 1564 tacgcccaaccacaagctcgagggtcaaagttcttggaaatgagtggatttgagaagttc 1505
Query: 583 aggtatcgatcatagcgatggaaactctctccacaagtctcaacagcaccgtt 635
|| || || ||| ||||||| || || || ||||| ||||| |||||||||||
Sbjct: 1504 agataacggtcaaagcgatgaaagctttccccacacgtctctacagcaccgtt 1452
>gb|AY091394.1| Arabidopsis thaliana unknown protein (At5g47780) mRNA, complete cds
Length = 1882
Score = 65.9 bits (33), Expect = 1e-008
Identities = 138/173 (79%)
Strand = Plus / Minus
Query: 463 tgataaatttcagttatgttctgccgcctccattcagccaggtcaaacacattcattcca 522
||||||| ||| || ||||| |||| | |||||||| |||| ||||| |||||||| |||
Sbjct: 1559 tgataaacttctgtgatgttttgcctcttccattcatccagatcaaagacattcatacca 1500
Query: 523 aaagcccaaacacaagcatgtgggtcaaaactcttggtgataatgggatttgaaaaattc 582
| |||||| ||||||| | |||||||| |||||| || | |||||||| || |||
Sbjct: 1499 tacgcccaaccacaagctcgagggtcaaagttcttggaaatgagtggatttgagaagttc 1440
Query: 583 aggtatcgatcatagcgatggaaactctctccacaagtctcaacagcaccgtt 635
|| || || ||| ||||||| || || || ||||| ||||| |||||||||||
Sbjct: 1439 agataacggtcaaagcgatgaaagctttccccacacgtctctacagcaccgtt 1387
>emb|BX831422.1|CNS09ZHW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS88ZH04 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1933
Score = 65.9 bits (33), Expect = 1e-008
Identities = 138/173 (79%)
Strand = Plus / Minus
Query: 463 tgataaatttcagttatgttctgccgcctccattcagccaggtcaaacacattcattcca 522
||||||| ||| || ||||| |||| | |||||||| |||| ||||| |||||||| |||
Sbjct: 1566 tgataaacttctgtgatgttttgcctcttccattcatccagatcaaagacattcatacca 1507
Query: 523 aaagcccaaacacaagcatgtgggtcaaaactcttggtgataatgggatttgaaaaattc 582
| |||||| ||||||| | |||||||| |||||| || | |||||||| || |||
Sbjct: 1506 tacgcccaaccacaagctcgagggtcaaagttcttggaaatgagtggatttgagaagttc 1447
Query: 583 aggtatcgatcatagcgatggaaactctctccacaagtctcaacagcaccgtt 635
|| || || ||| ||||||| || || || ||||| ||||| |||||||||||
Sbjct: 1446 agataacggtcaaagcgatgaaagctttccccacacgtctctacagcaccgtt 1394
>emb|BX832170.1|CNS09ZMF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH56ZC06 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1922
Score = 65.9 bits (33), Expect = 1e-008
Identities = 138/173 (79%)
Strand = Plus / Minus
Query: 463 tgataaatttcagttatgttctgccgcctccattcagccaggtcaaacacattcattcca 522
||||||| ||| || ||||| |||| | |||||||| |||| ||||| |||||||| |||
Sbjct: 1611 tgataaacttctgtgatgttttgcctcttccattcatccagatcaaagacattcatacca 1552
Query: 523 aaagcccaaacacaagcatgtgggtcaaaactcttggtgataatgggatttgaaaaattc 582
| |||||| ||||||| | |||||||| |||||| || | |||||||| || |||
Sbjct: 1551 tacgcccaaccacaagctcgagggtcaaagttcttggaaatgagtggatttgagaagttc 1492
Query: 583 aggtatcgatcatagcgatggaaactctctccacaagtctcaacagcaccgtt 635
|| || || ||| ||||||| || || || ||||| ||||| |||||||||||
Sbjct: 1491 agataacggtcaaagcgatgaaagctttccccacacgtctctacagcaccgtt 1439
>dbj|AB016886.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCA23
Length = 82503
Score = 65.9 bits (33), Expect = 1e-008
Identities = 138/173 (79%)
Strand = Plus / Minus
Query: 463 tgataaatttcagttatgttctgccgcctccattcagccaggtcaaacacattcattcca 522
||||||| ||| || ||||| |||| | |||||||| |||| ||||| |||||||| |||
Sbjct: 27368 tgataaacttctgtgatgttttgcctcttccattcatccagatcaaagacattcatacca 27309
Query: 523 aaagcccaaacacaagcatgtgggtcaaaactcttggtgataatgggatttgaaaaattc 582
| |||||| ||||||| | |||||||| |||||| || | |||||||| || |||
Sbjct: 27308 tacgcccaaccacaagctcgagggtcaaagttcttggaaatgagtggatttgagaagttc 27249
Query: 583 aggtatcgatcatagcgatggaaactctctccacaagtctcaacagcaccgtt 635
|| || || ||| ||||||| || || || ||||| ||||| |||||||||||
Sbjct: 27248 agataacggtcaaagcgatgaaagctttccccacacgtctctacagcaccgtt 27196
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 65.9 bits (33), Expect = 1e-008
Identities = 138/173 (79%)
Strand = Plus / Minus
Query: 463 tgataaatttcagttatgttctgccgcctccattcagccaggtcaaacacattcattcca 522
||||||| ||| || ||||| |||| | |||||||| |||| ||||| |||||||| |||
Sbjct: 17490262 tgataaacttctgtgatgttttgcctcttccattcatccagatcaaagacattcatacca 17490203
Query: 523 aaagcccaaacacaagcatgtgggtcaaaactcttggtgataatgggatttgaaaaattc 582
| |||||| ||||||| | |||||||| |||||| || | |||||||| || |||
Sbjct: 17490202 tacgcccaaccacaagctcgagggtcaaagttcttggaaatgagtggatttgagaagttc 17490143
Query: 583 aggtatcgatcatagcgatggaaactctctccacaagtctcaacagcaccgtt 635
|| || || ||| ||||||| || || || ||||| ||||| |||||||||||
Sbjct: 17490142 agataacggtcaaagcgatgaaagctttccccacacgtctctacagcaccgtt 17490090
>ref|NM_124152.2| Arabidopsis thaliana transferase, transferring glycosyl groups
AT5G47780 mRNA, complete cds
Length = 2075
Score = 65.9 bits (33), Expect = 1e-008
Identities = 138/173 (79%)
Strand = Plus / Minus
Query: 463 tgataaatttcagttatgttctgccgcctccattcagccaggtcaaacacattcattcca 522
||||||| ||| || ||||| |||| | |||||||| |||| ||||| |||||||| |||
Sbjct: 1631 tgataaacttctgtgatgttttgcctcttccattcatccagatcaaagacattcatacca 1572
Query: 523 aaagcccaaacacaagcatgtgggtcaaaactcttggtgataatgggatttgaaaaattc 582
| |||||| ||||||| | |||||||| |||||| || | |||||||| || |||
Sbjct: 1571 tacgcccaaccacaagctcgagggtcaaagttcttggaaatgagtggatttgagaagttc 1512
Query: 583 aggtatcgatcatagcgatggaaactctctccacaagtctcaacagcaccgtt 635
|| || || ||| ||||||| || || || ||||| ||||| |||||||||||
Sbjct: 1511 agataacggtcaaagcgatgaaagctttccccacacgtctctacagcaccgtt 1459
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 65.9 bits (33), Expect = 1e-008
Identities = 138/173 (79%)
Strand = Plus / Minus
Query: 463 tgataaatttcagttatgttctgccgcctccattcagccaggtcaaacacattcattcca 522
||||||| ||| || ||||| |||| | |||||||| |||| ||||| |||||||| |||
Sbjct: 19367361 tgataaacttctgtgatgttttgcctcttccattcatccagatcaaagacattcatacca 19367302
Query: 523 aaagcccaaacacaagcatgtgggtcaaaactcttggtgataatgggatttgaaaaattc 582
| |||||| ||||||| | |||||||| |||||| || | |||||||| || |||
Sbjct: 19367301 tacgcccaaccacaagctcgagggtcaaagttcttggaaatgagtggatttgagaagttc 19367242
Query: 583 aggtatcgatcatagcgatggaaactctctccacaagtctcaacagcaccgtt 635
|| || || ||| ||||||| || || || ||||| ||||| |||||||||||
Sbjct: 19367241 agataacggtcaaagcgatgaaagctttccccacacgtctctacagcaccgtt 19367189
>gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-FF9 similar to UNKNOWN PROTEIN, mRNA sequence
Length = 421
Score = 54.0 bits (27), Expect = 4e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 772 aggtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||||
Sbjct: 395 aggtacctgcccgggcggccgctcgaa 421
>emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequence GK-708H07-022965,
genomic survey sequence
Length = 416
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 773 ggtacctgcccgggcggccgctcgaa 798
||||||||||||||||||||||||||
Sbjct: 53 ggtacctgcccgggcggccgctcgaa 28
>gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC4-H4 similar
to putative protein with homology to rubisco small
subunit, mRNA sequence
Length = 370
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 773 ggtacctgcccgggcggccgctcgaa 798
||||||||||||||||||||||||||
Sbjct: 85 ggtacctgcccgggcggccgctcgaa 60
>gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC1-C2 similar
to putative tyrosine aminotransferase, mRNA sequence
Length = 579
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 773 ggtacctgcccgggcggccgctcgaa 798
||||||||||||||||||||||||||
Sbjct: 60 ggtacctgcccgggcggccgctcgaa 35
>gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RAA10 similar to chlorophyll a/b-binding
protein, mRNA sequence
Length = 527
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 773 ggtacctgcccgggcggccgctcgaa 798
||||||||||||||||||||||||||
Sbjct: 365 ggtacctgcccgggcggccgctcgaa 390
>emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequence GK-708B12-022965,
genomic survey sequence
Length = 378
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||
Sbjct: 51 gtacctgcccgggcggccgctcgaa 27
>gb|AI994533.1|AI994533 701498530 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701498530, mRNA sequence
Length = 545
Score = 50.1 bits (25), Expect = 6e-004
Identities = 136/173 (78%)
Strand = Plus / Minus
Query: 463 tgataaatttcagttatgttctgccgcctccattcagccaggtcaaacacattcattcca 522
||||||| ||| || ||||| |||| | |||||||| | || |||| |||||||| |||
Sbjct: 509 tgataaacttctgtgatgttttgcctcttccattcatcgagatcaaggacattcatacca 450
Query: 523 aaagcccaaacacaagcatgtgggtcaaaactcttggtgataatgggatttgaaaaattc 582
| |||||| ||||||| | |||||||| |||||| || | |||||||| || |||
Sbjct: 449 tacgcccaaccacaagctcgagggtcaaagttcttggaaatgagtggatttgagaagttc 390
Query: 583 aggtatcgatcatagcgatggaaactctctccacaagtctcaacagcaccgtt 635
|| || || ||| ||||||| || || || ||||| ||||| |||||||||||
Sbjct: 389 agataacggtcaaagcgatgaaagctgtccccacacgtctctacagcaccgtt 337
>gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA7 similar to
small nuclear ribosomal protein E, mRNA sequence
Length = 263
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||
Sbjct: 239 gtacctgcccgggcggccgctcgaa 263
>gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA9, mRNA sequence
Length = 328
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||
Sbjct: 304 gtacctgcccgggcggccgctcgaa 328
>gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtaOzHC2 similar to
Lhca2 chlorophyll a/b-binding protein, mRNA sequence
Length = 450
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||
Sbjct: 81 gtacctgcccgggcggccgctcgaa 57
>gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EB10, mRNA sequence
Length = 406
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||
Sbjct: 382 gtacctgcccgggcggccgctcgaa 406
>gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLC01 similar to PSII 32Kda protein, mRNA
sequence
Length = 358
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||
Sbjct: 329 gtacctgcccgggcggccgctcgaa 353
>gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH04 similar to PsbA gene in chloroplast
genome, mRNA sequence
Length = 360
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||
Sbjct: 332 gtacctgcccgggcggccgctcgaa 356
>gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH10 similar to putative protein, mRNA
sequence
Length = 305
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||
Sbjct: 278 gtacctgcccgggcggccgctcgaa 302
>gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-AA5 similar to NAD dependent epimerase, mRNA
sequence
Length = 601
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 773 ggtacctgcccgggcggccgctcga 797
|||||||||||||||||||||||||
Sbjct: 451 ggtacctgcccgggcggccgctcga 475
>gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EH12 similar to putative protein, mRNA
sequence
Length = 271
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||
Sbjct: 247 gtacctgcccgggcggccgctcgaa 271
>emb|AX507774.1| Sequence 2469 from Patent WO0216655
Length = 238
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 773 ggtacctgcccgggcggccgctcga 797
|||||||||||||||||||||||||
Sbjct: 25 ggtacctgcccgggcggccgctcga 1
>gb|CB074186.1|CB074186 EST02508 Early Ovule Development Forward Subtracted Library
Arabidopsis thaliana cDNA clone 1D17G5 similar to blue
copper protein, mRNA sequence
Length = 149
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 33 gtacctgcccgggcggccgctcga 10
>gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-BB7 similar to PUTATIVE PROTEIN, mRNA sequence
Length = 320
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 213 gtacctgcccgggcggccgctcga 236
>gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 10D03, mRNA sequence
Length = 640
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 123 gtacctgcccgggcggccgctcga 146
>emb|AX505609.1| Sequence 304 from Patent WO0216655
Length = 414
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 775 tacctgcccgggcggccgctcgaa 798
||||||||||||||||||||||||
Sbjct: 29 tacctgcccgggcggccgctcgaa 6
>gb|CB185793.2|CB185793 EST00720 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone RPM3-G9 similar
to ARF GAP-like zinc finger-containing protein (ZIGA2),
mRNA sequence
Length = 746
Score = 46.1 bits (23), Expect = 0.009
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 69 acctgcccgggcggccgctcgaa 47
>gb|CB185942.1|CB185942 EST01133 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC8-G7 similar
to putative 60S ribosomal protein L18, mRNA sequence
Length = 602
Score = 46.1 bits (23), Expect = 0.009
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 68 acctgcccgggcggccgctcgaa 46
>gb|CB185943.1|CB185943 EST01134 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC8-H5 similar
to WD repeat domain containing protein, mRNA sequence
Length = 473
Score = 46.1 bits (23), Expect = 0.009
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 776 acctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||
Sbjct: 339 acctgcccgggcggccgctcgaa 361
>gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RBC07 similar to PSI subunit, mRNA sequence
Length = 249
Score = 46.1 bits (23), Expect = 0.009
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcg 796
|||||||||||||||||||||||
Sbjct: 224 gtacctgcccgggcggccgctcg 246
>gb|U58918.1|ATU58918 Arabidopsis thaliana MEK kinase (MAP3Ka) mRNA, complete cds
Length = 2267
Score = 46.1 bits (23), Expect = 0.009
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 36 tacctgcccgggcggccgctcga 14
>emb|AJ010090.1|ATH010090 Arabidopsis thaliana mRNA for MAP3K alpha protein kinase
Length = 2189
Score = 46.1 bits (23), Expect = 0.009
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 36 tacctgcccgggcggccgctcga 14
>emb|CS137270.1| Sequence 241 from Patent WO2005047516
Length = 1371
Score = 46.1 bits (23), Expect = 0.009
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 276 tacctgcccgggcggccgctcga 254
Score = 44.1 bits (22), Expect = 0.037
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcga 797
||||||||||||||||||||||
Sbjct: 170 acctgcccgggcggccgctcga 149
>emb|AJ595464.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
417C12, genomic survey sequence
Length = 541
Score = 44.1 bits (22), Expect = 0.037
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 776 acctgcccgggcggccgctcga 797
||||||||||||||||||||||
Sbjct: 1 acctgcccgggcggccgctcga 22
>emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequence GK-712A09-022963,
genomic survey sequence
Length = 278
Score = 44.1 bits (22), Expect = 0.037
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctc 795
||||||||||||||||||||||
Sbjct: 199 gtacctgcccgggcggccgctc 220
>gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone Forward-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzD61, mRNA sequence
Length = 255
Score = 44.1 bits (22), Expect = 0.037
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctc 795
||||||||||||||||||||||
Sbjct: 170 gtacctgcccgggcggccgctc 191
>gb|CF772990.1|CF772990 AG_FSL_10G03 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 10G03, mRNA sequence
Length = 329
Score = 44.1 bits (22), Expect = 0.037
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||| ||||||||
Sbjct: 290 gtacctgcccgggcggncgctcgaa 314
>emb|AJ836963.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
258C06
Length = 244
Score = 44.1 bits (22), Expect = 0.037
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 772 aggtacctgcccgggcggccgctcga 797
|||||||| |||||||||||||||||
Sbjct: 163 aggtacctccccgggcggccgctcga 188
>emb|AJ837256.1| Arabidopsis thaliana T-DNA flanking sequence, right border, clone
274B01
Length = 351
Score = 44.1 bits (22), Expect = 0.037
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 772 aggtacctgcccgggcggccgctcga 797
|||||||| |||||||||||||||||
Sbjct: 228 aggtacctccccgggcggccgctcga 253
>emb|AJ840712.1| Arabidopsis thaliana T-DNA flanking sequence, right border, clone
608A06
Length = 786
Score = 44.1 bits (22), Expect = 0.037
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 772 aggtacctgcccgggcggccgctcga 797
|||||||| |||||||||||||||||
Sbjct: 446 aggtacctccccgggcggccgctcga 471
>emb|AJ272202.1|ATH272202 Arabidopsis thaliana mRNA for mitochondrial half-ABC transporter
(STA1 gene)
Length = 2452
Score = 44.1 bits (22), Expect = 0.037
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 776 acctgcccgggcggccgctcga 797
||||||||||||||||||||||
Sbjct: 2394 acctgcccgggcggccgctcga 2415
>emb|AJ293797.1|ATH293797 Arabidopsis thaliana mRNA for SC35-like splicing factor SCL28, 28
kD
Length = 1122
Score = 44.1 bits (22), Expect = 0.037
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcga 797
||||||||||||||||||||||
Sbjct: 36 acctgcccgggcggccgctcga 15
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 423,780
Number of Sequences: 1013581
Number of extensions: 423780
Number of successful extensions: 30786
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 30418
Number of HSP's gapped (non-prelim): 377
length of query: 798
length of database: 908,940,872
effective HSP length: 20
effective length of query: 778
effective length of database: 888,669,252
effective search space: 691384678056
effective search space used: 691384678056
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)