BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5352090.2.1
(915 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE530060.1|BE530060 M76B02STM Arabidopsis developing see... 62 2e-007
gb|AV829855.1|AV829855 AV829855 RAFL9 Arabidopsis thaliana ... 62 2e-007
gb|DR750765.1|DR750765 38-L021127-065-005-F05-SeLA MPIZ-ADI... 62 2e-007
ref|NM_179574.1| Arabidopsis thaliana APL (ALTERED PHLOEM D... 62 2e-007
gb|N38232.1|N38232 19459 Lambda-PRL2 Arabidopsis thaliana c... 60 7e-007
gb|N38325.1|N38325 19552 Lambda-PRL2 Arabidopsis thaliana c... 60 7e-007
gb|T41875.1|T41875 5138 Lambda-PRL2 Arabidopsis thaliana cD... 60 7e-007
gb|AV826050.1|AV826050 AV826050 RAFL8 Arabidopsis thaliana ... 56 1e-005
gb|BX840450.1|BX840450 BX840450 Arabidopsis thaliana Siliqu... 56 1e-005
gb|BP850735.1|BP850735 BP850735 RAFL21 Arabidopsis thaliana... 56 1e-005
gb|AY045662.1| Arabidopsis thaliana At1g79430/T8K14_15 mRNA... 56 1e-005
gb|AY143841.1| Arabidopsis thaliana At1g79430/T8K14_15 mRNA... 56 1e-005
gb|AC007202.3|T8K14 Arabidopsis thaliana chromosome 1 BAC T... 56 1e-005
emb|CS052442.1| Sequence 1 from Patent WO2005021759 56 1e-005
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 56 1e-005
ref|NM_106591.2| Arabidopsis thaliana APL (ALTERED PHLOEM D... 56 1e-005
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 56 1e-005
gb|AV824035.1|AV824035 AV824035 RAFL6 Arabidopsis thaliana ... 54 4e-005
gb|AV825695.1|AV825695 AV825695 RAFL7 Arabidopsis thaliana ... 54 4e-005
gb|AV830187.1|AV830187 AV830187 RAFL9 Arabidopsis thaliana ... 54 4e-005
gb|CK119230.1|CK119230 213g09.p1 AtM1 Arabidopsis thaliana ... 54 4e-005
gb|BP864590.1|BP864590 BP864590 RAFL21 Arabidopsis thaliana... 54 4e-005
gb|DR750293.1|DR750293 64-L021127-065-005-H08-SeLA MPIZ-ADI... 54 4e-005
gb|AY081310.1| Arabidopsis thaliana putative protein (At4g1... 54 4e-005
emb|BX826975.1|CNS0A46N Arabidopsis thaliana Full-length cD... 54 4e-005
emb|CQ804288.1| Sequence 699 from Patent WO2004035798 54 4e-005
ref|NM_117438.2| Arabidopsis thaliana transcription factor ... 54 4e-005
ref|NM_001036549.1| Arabidopsis thaliana unknown protein AT... 54 4e-005
gb|BP861056.1|BP861056 BP861056 RAFL21 Arabidopsis thaliana... 50 7e-004
emb|BX824265.1|CNS0A4TJ Arabidopsis thaliana Full-length cD... 50 7e-004
ref|NM_202627.1| Arabidopsis thaliana unknown protein AT3G2... 50 7e-004
gb|BP831773.1|BP831773 BP831773 RAFL19 Arabidopsis thaliana... 48 0.003
emb|AL086574.1|CNS00R2O Arabidopsis thaliana genome survey ... 46 0.011
gb|H76035.1|H76035 17740 Lambda-PRL2 Arabidopsis thaliana c... 46 0.011
gb|AV784260.1|AV784260 AV784260 RAFL5 Arabidopsis thaliana ... 46 0.011
gb|AV785165.1|AV785165 AV785165 RAFL6 Arabidopsis thaliana ... 46 0.011
gb|AV565361.1|AV565361 AV565361 Arabidopsis thaliana green ... 46 0.011
gb|BP560992.1|BP560992 BP560992 RAFL5 Arabidopsis thaliana ... 46 0.011
gb|AY050355.1| Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, ... 46 0.011
gb|AY094046.1| Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, ... 46 0.011
gb|AY087771.1| Arabidopsis thaliana clone 38327 mRNA, compl... 46 0.011
gb|AY088428.1| Arabidopsis thaliana clone 6626 mRNA, comple... 46 0.011
emb|BX825601.1|CNS0A6AZ Arabidopsis thaliana Full-length cD... 46 0.011
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 46 0.011
dbj|AB028621.1| Arabidopsis thaliana genomic DNA, chromosom... 46 0.011
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 46 0.011
emb|AL035528.2|ATF18A5 Arabidopsis thaliana DNA chromosome ... 46 0.011
emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosom... 46 0.011
ref|NM_113317.2| Arabidopsis thaliana transcription factor ... 46 0.011
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 46 0.011
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 46 0.011
gb|H39299.1|H39299 15886 Lambda-PRL2 Arabidopsis thaliana c... 44 0.042
>gb|BE530060.1|BE530060 M76B02STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600039501R1 5', mRNA sequence
Length = 274
Score = 61.9 bits (31), Expect = 2e-007
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 340 tgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagctcggcggac 399
|||| ||||| | ||| |||||||||||||| || |||||||| || ||||||||||| |
Sbjct: 127 tgcgttggaccgtcgaactccacgagcgttttgtggacgccgtcgctcagctcggcggcc 186
Query: 400 ccgagaaagcaacaccaaa 418
|||| ||||| || |||||
Sbjct: 187 ccgacaaagcgaccccaaa 205
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
||||| || |||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 222 atgggtgtgaagggtcttactctttaccacctaaagagccatcttcagaaat 273
>gb|AV829855.1|AV829855 AV829855 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-57-C07 5',
mRNA sequence
Length = 361
Score = 61.9 bits (31), Expect = 2e-007
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 340 tgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagctcggcggac 399
|||| ||||| | ||| |||||||||||||| || |||||||| || ||||||||||| |
Sbjct: 180 tgcgttggaccgtcgaactccacgagcgttttgtggacgccgtcgctcagctcggcggcc 239
Query: 400 ccgagaaagcaacaccaaa 418
|||| ||||| || |||||
Sbjct: 240 ccgacaaagcgaccccaaa 258
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
||||| || |||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 275 atgggtgtgaagggtcttactctttaccacctaaagagccatcttcagaaat 326
>gb|DR750765.1|DR750765 38-L021127-065-005-F05-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 005-F05, mRNA sequence
Length = 791
Score = 61.9 bits (31), Expect = 2e-007
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 340 tgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagctcggcggac 399
|||| ||||| | ||| |||||||||||||| || |||||||| || ||||||||||| |
Sbjct: 181 tgcgttggaccgtcgaactccacgagcgttttgtggacgccgtcgctcagctcggcggcc 240
Query: 400 ccgagaaagcaacaccaaa 418
|||| ||||| || |||||
Sbjct: 241 ccgacaaagcgaccccaaa 259
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
||||| || |||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 276 atgggtgtgaagggtcttactctttaccacctaaagagccatcttcagaaat 327
>ref|NM_179574.1| Arabidopsis thaliana APL (ALTERED PHLOEM DEVELOPMENT);
transcription factor AT1G79430 (APL) transcript variant
AT1G79430.2 mRNA, complete cds
Length = 1439
Score = 61.9 bits (31), Expect = 2e-007
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 340 tgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagctcggcggac 399
|||| ||||| | ||| |||||||||||||| || |||||||| || ||||||||||| |
Sbjct: 179 tgcgttggaccgtcgaactccacgagcgttttgtggacgccgtcgctcagctcggcggcc 238
Query: 400 ccgagaaagcaacaccaaa 418
|||| ||||| || |||||
Sbjct: 239 ccgacaaagcgaccccaaa 257
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
||||| || |||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 274 atgggtgtgaagggtcttactctttaccacctaaagagccatcttcagaaat 325
>gb|N38232.1|N38232 19459 Lambda-PRL2 Arabidopsis thaliana cDNA clone 221E15T7, mRNA
sequence
Length = 469
Score = 60.0 bits (30), Expect = 7e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 357 ctccacgagcgtttcgtcgacgccgtggcccagctcggcggacccgagaaagcaacacca 416
|||||||||||||| || |||||||| || ||||||||||| ||||| ||||| || |||
Sbjct: 61 ctccacgagcgttttgtggacgccgtcgctcagctcggcggccccgacaaagcgacccca 120
Query: 417 aa 418
||
Sbjct: 121 aa 122
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
||||| || |||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 139 atgggtgtgaagggtcttactctttaccacctaaagagccatcttcagaaat 190
>gb|N38325.1|N38325 19552 Lambda-PRL2 Arabidopsis thaliana cDNA clone 222N2T7, mRNA
sequence
Length = 509
Score = 60.0 bits (30), Expect = 7e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 357 ctccacgagcgtttcgtcgacgccgtggcccagctcggcggacccgagaaagcaacacca 416
|||||||||||||| || |||||||| || ||||||||||| ||||| ||||| || |||
Sbjct: 53 ctccacgagcgttttgtggacgccgtcgctcagctcggcggccccgacaaagcgacccca 112
Query: 417 aa 418
||
Sbjct: 113 aa 114
Score = 58.0 bits (29), Expect = 3e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
||||| || |||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 131 atgggtgtnaagggtcttactctttaccacctaaagagccatcttcagaaat 182
>gb|T41875.1|T41875 5138 Lambda-PRL2 Arabidopsis thaliana cDNA clone 109F1T7, mRNA
sequence
Length = 474
Score = 60.0 bits (30), Expect = 7e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 357 ctccacgagcgtttcgtcgacgccgtggcccagctcggcggacccgagaaagcaacacca 416
|||||||||||||| || |||||||| || ||||||||||| ||||| ||||| || |||
Sbjct: 62 ctccacgagcgttttgtggacgccgtcgctcagctcggcggccccgacaaagcgacccca 121
Query: 417 aa 418
||
Sbjct: 122 aa 123
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
||||| || |||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 140 atgggtgtgaagggtcttactctttaccacctaaagagccatcttcagaaat 191
>gb|AV826050.1|AV826050 AV826050 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-08-G12 5',
mRNA sequence
Length = 628
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
||||| || |||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 363 atgggtgtgaagggtcttactctttaccacctaaagagccatcttcagaaat 414
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 340 tgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagctcggcggac 399
|||| ||||| | ||| |||||||||||||| || |||||||| || ||||||||||| |
Sbjct: 178 tgcgttggaccgtcgaactccacgagcgttttgtggacgccgtcgctcagctcggcggcc 237
Query: 400 ccga 403
||||
Sbjct: 238 ccga 241
>gb|BX840450.1|BX840450 BX840450 Arabidopsis thaliana Silique Col-0 Arabidopsis thaliana
cDNA clone GSLTSIL32ZH01 5PRIM, mRNA sequence
Length = 405
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
||||| || |||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 222 atgggtgtgaagggtcttactctttaccacctaaagagccatcttcagaaat 273
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 340 tgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagctcggcggac 399
|||| ||||| | ||| |||||||||||||| || |||||||| || ||||||||||| |
Sbjct: 36 tgcgttggaccgtcgaactccacgagcgttttgtggacgccgtcgctcagctcggcggcc 95
Query: 400 ccga 403
||||
Sbjct: 96 ccga 99
>gb|BP850735.1|BP850735 BP850735 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-14-B10 5',
mRNA sequence
Length = 399
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
||||| || |||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 139 atgggtgtgaagggtcttactctttaacacctaaagagccatcttcagaaat 190
>gb|AY045662.1| Arabidopsis thaliana At1g79430/T8K14_15 mRNA, complete cds
Length = 1351
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
||||| || |||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 362 atgggtgtgaagggtcttactctttaccacctaaagagccatcttcagaaat 413
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 340 tgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagctcggcggac 399
|||| ||||| | ||| |||||||||||||| || |||||||| || ||||||||||| |
Sbjct: 177 tgcgttggaccgtcgaactccacgagcgttttgtggacgccgtcgctcagctcggcggcc 236
Query: 400 ccga 403
||||
Sbjct: 237 ccga 240
>gb|AY143841.1| Arabidopsis thaliana At1g79430/T8K14_15 mRNA, complete cds
Length = 882
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
||||| || |||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 10 atgggtgtgaagggtcttactctttaccacctaaagagccatcttcagaaat 61
>gb|AC007202.3|T8K14 Arabidopsis thaliana chromosome 1 BAC T8K14 sequence, complete sequence
Length = 80374
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 340 tgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagctcggcggac 399
|||| ||||| | ||| |||||||||||||| || |||||||| || ||||||||||| |
Sbjct: 58962 tgcgttggaccgtcgaactccacgagcgttttgtggacgccgtcgctcagctcggcggcc 59021
Query: 400 ccga 403
||||
Sbjct: 59022 ccga 59025
Score = 48.1 bits (24), Expect = 0.003
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcag 481
||||| || |||||||||||||||| ||| | |||||||||||||||
Sbjct: 59147 atgggtgtgaagggtcttactctttaccacctaaagagccatcttcag 59194
>emb|CS052442.1| Sequence 1 from Patent WO2005021759
Length = 1615
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 340 tgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagctcggcggac 399
|||| ||||| | ||| |||||||||||||| || |||||||| || ||||||||||| |
Sbjct: 110 tgcgttggaccgtcgaactccacgagcgttttgtggacgccgtcgctcagctcggcggcc 169
Query: 400 ccga 403
||||
Sbjct: 170 ccga 173
Score = 48.1 bits (24), Expect = 0.003
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcag 481
||||| || |||||||||||||||| ||| | |||||||||||||||
Sbjct: 295 atgggtgtgaagggtcttactctttaccacctaaagagccatcttcag 342
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 340 tgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagctcggcggac 399
|||| ||||| | ||| |||||||||||||| || |||||||| || ||||||||||| |
Sbjct: 14120240 tgcgttggaccgtcgaactccacgagcgttttgtggacgccgtcgctcagctcggcggcc 14120181
Query: 400 ccga 403
||||
Sbjct: 14120180 ccga 14120177
Score = 48.1 bits (24), Expect = 0.003
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcag 481
||||| || |||||||||||||||| ||| | |||||||||||||||
Sbjct: 14120055 atgggtgtgaagggtcttactctttaccacctaaagagccatcttcag 14120008
>ref|NM_106591.2| Arabidopsis thaliana APL (ALTERED PHLOEM DEVELOPMENT);
transcription factor AT1G79430 (APL) transcript variant
AT1G79430.1 mRNA, complete cds
Length = 1529
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
||||| || |||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 364 atgggtgtgaagggtcttactctttaccacctaaagagccatcttcagaaat 415
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 340 tgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagctcggcggac 399
|||| ||||| | ||| |||||||||||||| || |||||||| || ||||||||||| |
Sbjct: 179 tgcgttggaccgtcgaactccacgagcgttttgtggacgccgtcgctcagctcggcggcc 238
Query: 400 ccga 403
||||
Sbjct: 239 ccga 242
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 340 tgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagctcggcggac 399
|||| ||||| | ||| |||||||||||||| || |||||||| || ||||||||||| |
Sbjct: 29883919 tgcgttggaccgtcgaactccacgagcgttttgtggacgccgtcgctcagctcggcggcc 29883860
Query: 400 ccga 403
||||
Sbjct: 29883859 ccga 29883856
Score = 48.1 bits (24), Expect = 0.003
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcag 481
||||| || |||||||||||||||| ||| | |||||||||||||||
Sbjct: 29883734 atgggtgtgaagggtcttactctttaccacctaaagagccatcttcag 29883687
>gb|AV824035.1|AV824035 AV824035 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-12-H15 5',
mRNA sequence
Length = 635
Score = 54.0 bits (27), Expect = 4e-005
Identities = 76/91 (83%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 369 ttcgtcgacgccgtggcccagctcggcggacccgagaaagcaacacc-aaaaatatctta 427
||||| |||||||| | ||||||||||||||||| |||||||| || |||| ||| |
Sbjct: 212 ttcgttgacgccgtcactcagctcggcggacccgacaaagcaacgcctaaaactataatg 271
Query: 428 aggacaatgggcgtcaagggtcttactcttt 458
|| |||||||| || |||||||| |||||||
Sbjct: 272 agaacaatgggagtgaagggtctcactcttt 302
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 491 cagatggaagtccaaagaagact 513
>gb|AV825695.1|AV825695 AV825695 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-12-N14 5',
mRNA sequence
Length = 622
Score = 54.0 bits (27), Expect = 4e-005
Identities = 76/91 (83%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 369 ttcgtcgacgccgtggcccagctcggcggacccgagaaagcaacacc-aaaaatatctta 427
||||| |||||||| | ||||||||||||||||| |||||||| || |||| ||| |
Sbjct: 245 ttcgttgacgccgtcactcagctcggcggacccgacaaagcaacgcctaaaactataatg 304
Query: 428 aggacaatgggcgtcaagggtcttactcttt 458
|| |||||||| || |||||||| |||||||
Sbjct: 305 agaacaatgggagtgaagggtctcactcttt 335
>gb|AV830187.1|AV830187 AV830187 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-64-G01 5',
mRNA sequence
Length = 319
Score = 54.0 bits (27), Expect = 4e-005
Identities = 76/91 (83%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 369 ttcgtcgacgccgtggcccagctcggcggacccgagaaagcaacacc-aaaaatatctta 427
||||| |||||||| | ||||||||||||||||| |||||||| || |||| ||| |
Sbjct: 214 ttcgttgacgccgtcactcagctcggcggacccgacaaagcaacgcctaaaactataatg 273
Query: 428 aggacaatgggcgtcaagggtcttactcttt 458
|| |||||||| || |||||||| |||||||
Sbjct: 274 agaacaatgggagtgaagggtctcactcttt 304
>gb|CK119230.1|CK119230 213g09.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011G09213
5-PRIME, mRNA sequence
Length = 584
Score = 54.0 bits (27), Expect = 4e-005
Identities = 76/91 (83%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 369 ttcgtcgacgccgtggcccagctcggcggacccgagaaagcaacacc-aaaaatatctta 427
||||| |||||||| | ||||||||||||||||| |||||||| || |||| ||| |
Sbjct: 231 ttcgttgacgccgtcactcagctcggcggacccgacaaagcaacgcctaaaactataatg 290
Query: 428 aggacaatgggcgtcaagggtcttactcttt 458
|| |||||||| || |||||||| |||||||
Sbjct: 291 agaacaatgggagtgaagggtctcactcttt 321
>gb|BP864590.1|BP864590 BP864590 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-70-L22 5',
mRNA sequence
Length = 384
Score = 54.0 bits (27), Expect = 4e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 340 tgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagctcggcggac 399
|||| ||||| | ||| ||||| |||||||| || |||||||| || ||||||||||| |
Sbjct: 55 tgcgttggaccgtcgaactccaggagcgttttgtggacgccgtcgctcagctcggcggcc 114
Query: 400 ccgagaaagcaacaccaaa 418
|||| ||||| || |||||
Sbjct: 115 ccgacaaagcgaccccaaa 133
>gb|DR750293.1|DR750293 64-L021127-065-005-H08-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 005-H08, mRNA sequence
Length = 785
Score = 54.0 bits (27), Expect = 4e-005
Identities = 76/91 (83%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 369 ttcgtcgacgccgtggcccagctcggcggacccgagaaagcaacacc-aaaaatatctta 427
||||| |||||||| | ||||||||||||||||| |||||||| || |||| ||| |
Sbjct: 220 ttcgttgacgccgtcactcagctcggcggacccgacaaagcaacgcctaaaactataatg 279
Query: 428 aggacaatgggcgtcaagggtcttactcttt 458
|| |||||||| || |||||||| |||||||
Sbjct: 280 agaacaatgggagtgaagggtctcactcttt 310
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 499 cagatggaagtccaaagaagact 521
>gb|AY081310.1| Arabidopsis thaliana putative protein (At4g13640) mRNA, complete
cds
Length = 1302
Score = 54.0 bits (27), Expect = 4e-005
Identities = 76/91 (83%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 369 ttcgtcgacgccgtggcccagctcggcggacccgagaaagcaacacc-aaaaatatctta 427
||||| |||||||| | ||||||||||||||||| |||||||| || |||| ||| |
Sbjct: 244 ttcgttgacgccgtcactcagctcggcggacccgacaaagcaacgcctaaaactataatg 303
Query: 428 aggacaatgggcgtcaagggtcttactcttt 458
|| |||||||| || |||||||| |||||||
Sbjct: 304 agaacaatgggagtgaagggtctcactcttt 334
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 631 cagatggaagtccaaagaagact 653
>emb|BX826975.1|CNS0A46N Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB82ZG04 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1117
Score = 54.0 bits (27), Expect = 4e-005
Identities = 76/91 (83%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 369 ttcgtcgacgccgtggcccagctcggcggacccgagaaagcaacacc-aaaaatatctta 427
||||| |||||||| | ||||||||||||||||| |||||||| || |||| ||| |
Sbjct: 276 ttcgttgacgccgtcactcagctcggcggacccgacaaagcaacgcctaaaactataatg 335
Query: 428 aggacaatgggcgtcaagggtcttactcttt 458
|| |||||||| || |||||||| |||||||
Sbjct: 336 agaacaatgggagtgaagggtctcactcttt 366
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 555 cagatggaagtccaaagaagact 577
>emb|CQ804288.1| Sequence 699 from Patent WO2004035798
Length = 879
Score = 54.0 bits (27), Expect = 4e-005
Identities = 76/91 (83%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 369 ttcgtcgacgccgtggcccagctcggcggacccgagaaagcaacacc-aaaaatatctta 427
||||| |||||||| | ||||||||||||||||| |||||||| || |||| ||| |
Sbjct: 148 ttcgttgacgccgtcactcagctcggcggacccgacaaagcaacgcctaaaactataatg 207
Query: 428 aggacaatgggcgtcaagggtcttactcttt 458
|| |||||||| || |||||||| |||||||
Sbjct: 208 agaacaatgggagtgaagggtctcactcttt 238
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 427 cagatggaagtccaaagaagact 449
>ref|NM_117438.2| Arabidopsis thaliana transcription factor AT4G13640 transcript
variant AT4G13640.1 mRNA, complete cds
Length = 1284
Score = 54.0 bits (27), Expect = 4e-005
Identities = 76/91 (83%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 369 ttcgtcgacgccgtggcccagctcggcggacccgagaaagcaacacc-aaaaatatctta 427
||||| |||||||| | ||||||||||||||||| |||||||| || |||| ||| |
Sbjct: 281 ttcgttgacgccgtcactcagctcggcggacccgacaaagcaacgcctaaaactataatg 340
Query: 428 aggacaatgggcgtcaagggtcttactcttt 458
|| |||||||| || |||||||| |||||||
Sbjct: 341 agaacaatgggagtgaagggtctcactcttt 371
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 560 cagatggaagtccaaagaagact 582
>ref|NM_001036549.1| Arabidopsis thaliana unknown protein AT4G13640 transcript variant
AT4G13640.2 mRNA, complete cds
Length = 1279
Score = 54.0 bits (27), Expect = 4e-005
Identities = 76/91 (83%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 369 ttcgtcgacgccgtggcccagctcggcggacccgagaaagcaacacc-aaaaatatctta 427
||||| |||||||| | ||||||||||||||||| |||||||| || |||| ||| |
Sbjct: 281 ttcgttgacgccgtcactcagctcggcggacccgacaaagcaacgcctaaaactataatg 340
Query: 428 aggacaatgggcgtcaagggtcttactcttt 458
|| |||||||| || |||||||| |||||||
Sbjct: 341 agaacaatgggagtgaagggtctcactcttt 371
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 560 cagatggaagtccaaagaagact 582
>gb|BP861056.1|BP861056 BP861056 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-46-D07 5',
mRNA sequence
Length = 370
Score = 50.1 bits (25), Expect = 7e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 369 ttcgtcgacgccgtggcccagctcggcggacccgagaaagcaacaccaaaaat 421
||||| |||||||| | ||||||||||||||||| |||||||| || |||||
Sbjct: 242 ttcgttgacgccgtcactcagctcggcggacccgacaaagcaacgcctaaaat 294
>emb|BX824265.1|CNS0A4TJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH35ZA11 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1344
Score = 50.1 bits (25), Expect = 7e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 638 cagatggaagtccaaagaagactgcatgaacaagtggagta 678
||||||||||||||||||||||| || || ||| |||||||
Sbjct: 606 cagatggaagtccaaagaagactacacgatcaattggagta 646
>ref|NM_202627.1| Arabidopsis thaliana unknown protein AT3G24120 transcript variant
AT3G24120.2 mRNA, complete cds
Length = 1353
Score = 50.1 bits (25), Expect = 7e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 638 cagatggaagtccaaagaagactgcatgaacaagtggagta 678
||||||||||||||||||||||| || || ||| |||||||
Sbjct: 606 cagatggaagtccaaagaagactacacgatcaattggagta 646
>gb|BP831773.1|BP831773 BP831773 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-90-D04 5',
mRNA sequence
Length = 353
Score = 48.1 bits (24), Expect = 0.003
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 434 atgggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaat 485
||||| || |||||||||||||||| ||| | |||||| ||||||||||||
Sbjct: 273 atgggtgtgaagggtcttactctttaccacctaaagagcaatcttcagaaat 324
Score = 42.1 bits (21), Expect = 0.17
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 357 ctccacgagcgtttcgtcgacgccgtggcccagctcggcgg 397
|||||||||||||| || |||||||| || |||||||||||
Sbjct: 199 ctccacgagcgttt-gtggacgccgtcgctcagctcggcgg 238
>emb|AL086574.1|CNS00R2O Arabidopsis thaliana genome survey sequence SP6 end of BAC F12O2 of
IGF library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 526
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 260 cagatggaagtccaaagaagact 282
>gb|H76035.1|H76035 17740 Lambda-PRL2 Arabidopsis thaliana cDNA clone 193O3T7, mRNA
sequence
Length = 576
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 34 cagatggaagtccaaagaagact 56
>gb|AV784260.1|AV784260 AV784260 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-17-N21 3',
mRNA sequence
Length = 703
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 629 cagatggaagtccaaagaagact 607
>gb|AV785165.1|AV785165 AV785165 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-12-H15 3',
mRNA sequence
Length = 676
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 620 cagatggaagtccaaagaagact 598
>gb|AV565361.1|AV565361 AV565361 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ222e12F 3', mRNA sequence
Length = 515
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 440 cagatggaagtccaaagaagact 462
>gb|BP560992.1|BP560992 BP560992 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-17-N21 5',
mRNA sequence
Length = 666
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 467 cagatggaagtccaaagaagact 489
>gb|AY050355.1| Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds
Length = 1097
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 469 cagatggaagtccaaagaagact 491
>gb|AY094046.1| Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds
Length = 888
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 439 cagatggaagtccaaagaagact 461
>gb|AY087771.1| Arabidopsis thaliana clone 38327 mRNA, complete sequence
Length = 1155
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 560 cagatggaagtccaaagaagact 582
Score = 46.1 bits (23), Expect = 0.011
Identities = 75/91 (82%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 369 ttcgtcgacgccgtggcccagctcggcggacccgagaaagcaacacc-aaaaatatctta 427
||||| |||||||| | || |||||||||||||| |||||||| || |||| ||| |
Sbjct: 281 ttcgttgacgccgtcactcaactcggcggacccgacaaagcaacgcctaaaactataatg 340
Query: 428 aggacaatgggcgtcaagggtcttactcttt 458
|| |||||||| || |||||||| |||||||
Sbjct: 341 agaacaatgggagtgaagggtctcactcttt 371
>gb|AY088428.1| Arabidopsis thaliana clone 6626 mRNA, complete sequence
Length = 1098
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 474 cagatggaagtccaaagaagact 496
>emb|BX825601.1|CNS0A6AZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL47ZE10 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1054
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 467 cagatggaagtccaaagaagact 489
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 3850260 cagatggaagtccaaagaagact 3850238
>dbj|AB028621.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MUJ8
Length = 78921
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 3303 cagatggaagtccaaagaagact 3281
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 8650317 cagatggaagtccaaagaagact 8650295
>emb|AL035528.2|ATF18A5 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project)
Length = 118718
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 8537 cagatggaagtccaaagaagact 8515
>emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37
Length = 199667
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 29629 cagatggaagtccaaagaagact 29607
>ref|NM_113317.2| Arabidopsis thaliana transcription factor AT3G24120 transcript
variant AT3G24120.1 mRNA, complete cds
Length = 1100
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 474 cagatggaagtccaaagaagact 496
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 638 cagatggaagtccaaagaagact 660
|||||||||||||||||||||||
Sbjct: 8706669 cagatggaagtccaaagaagact 8706647
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 509,519
Number of Sequences: 1013581
Number of extensions: 509519
Number of successful extensions: 38258
Number of sequences better than 0.5: 52
Number of HSP's better than 0.5 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36920
Number of HSP's gapped (non-prelim): 1336
length of query: 915
length of database: 908,940,872
effective HSP length: 20
effective length of query: 895
effective length of database: 888,669,252
effective search space: 795358980540
effective search space used: 795358980540
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)