BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4790360.2.1
(667 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP596219.1|BP596219 BP596219 RAFL15 Arabidopsis thaliana... 66 8e-009
gb|AY128376.1| Arabidopsis thaliana unknown protein (At1g53... 66 8e-009
gb|BT008831.1| Arabidopsis thaliana At1g53290 mRNA, complet... 66 8e-009
emb|BX818399.1|CNS0AAJ6 Arabidopsis thaliana Full-length cD... 66 8e-009
emb|BX818271.1|CNS0AEK9 Arabidopsis thaliana Full-length cD... 66 8e-009
ref|NM_104207.2| Arabidopsis thaliana transferase, transfer... 66 8e-009
gb|AV820584.1|AV820584 AV820584 RAFL11 Arabidopsis thaliana... 62 1e-007
gb|BP585823.1|BP585823 BP585823 RAFL15 Arabidopsis thaliana... 58 2e-006
gb|AY070398.1| Arabidopsis thaliana putative galactosyltran... 58 2e-006
gb|AY133728.1| Arabidopsis thaliana clone U19626 putative g... 58 2e-006
emb|BX823512.1|CNS0A6KQ Arabidopsis thaliana Full-length cD... 58 2e-006
emb|BX824144.1|CNS0A6RK Arabidopsis thaliana Full-length cD... 58 2e-006
ref|NM_112358.3| Arabidopsis thaliana transferase, transfer... 58 2e-006
emb|AL953547.1| Arabidopsis thaliana T-DNA flanking sequenc... 56 8e-006
gb|AC008007.7|AC008007 Genomic sequence for Arabidopsis tha... 56 8e-006
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 56 8e-006
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 56 8e-006
gb|AV818851.1|AV818851 AV818851 RAFL11 Arabidopsis thaliana... 54 3e-005
gb|AV819025.1|AV819025 AV819025 RAFL11 Arabidopsis thaliana... 52 1e-004
dbj|AP000370.1| Arabidopsis thaliana genomic DNA, chromosom... 52 1e-004
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 52 1e-004
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 52 1e-004
gb|AV533284.1|AV533284 AV533284 Arabidopsis thaliana flower... 48 0.002
gb|AV535427.1|AV535427 AV535427 Arabidopsis thaliana flower... 48 0.002
>gb|BP596219.1|BP596219 BP596219 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-33-F20 3',
mRNA sequence
Length = 440
Score = 65.9 bits (33), Expect = 8e-009
Identities = 123/153 (80%)
Strand = Plus / Minus
Query: 35 tacttccttcatgcatatgggccaatttatgctttatcagctgacgtggtggctagcttg 94
||||| |||||||| ||||| || ||||||||| | || ||||| ||||| || || |||
Sbjct: 416 tactttcttcatgcttatggcccgatttatgctctctctgctgatgtggtagccagtttg 357
Query: 95 gttgcattgcgaaacaacagtttccgtatgttcagcaacgaggacgttacaattggatcg 154
||||| | || ||||||||| | ||||| | |||||||||||| ||||| || ||
Sbjct: 356 gttgccctcaagaataacagtttcaggatgtttaacaacgaggacgtaacaataggtgcg 297
Query: 155 tggatgcttgctatgaacgtcaaccatgagaac 187
|||||||| || ||||| |||||||| ||||||
Sbjct: 296 tggatgctggcaatgaatgtcaaccacgagaac 264
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 228 ttgctgtttgggacatcccaaaatgctcaggtctatgccacccagag 274
||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 223 ttgctgtttgggacatccctaaatgctcaggtctttgtaacccagag 177
>gb|AY128376.1| Arabidopsis thaliana unknown protein (At1g53290) mRNA, complete cds
Length = 1172
Score = 65.9 bits (33), Expect = 8e-009
Identities = 123/153 (80%)
Strand = Plus / Plus
Query: 35 tacttccttcatgcatatgggccaatttatgctttatcagctgacgtggtggctagcttg 94
||||| |||||||| ||||| || ||||||||| | || ||||| ||||| || || |||
Sbjct: 730 tactttcttcatgcttatggcccgatttatgctctctctgctgatgtggtagccagtttg 789
Query: 95 gttgcattgcgaaacaacagtttccgtatgttcagcaacgaggacgttacaattggatcg 154
||||| | || ||||||||| | ||||| | |||||||||||| ||||| || ||
Sbjct: 790 gttgccctcaagaataacagtttcaggatgtttaacaacgaggacgtaacaataggtgcg 849
Query: 155 tggatgcttgctatgaacgtcaaccatgagaac 187
|||||||| || ||||| |||||||| ||||||
Sbjct: 850 tggatgctggcaatgaatgtcaaccacgagaac 882
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 228 ttgctgtttgggacatcccaaaatgctcaggtctatgccacccagag 274
||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 923 ttgctgtttgggacatccctaaatgctcaggtctttgtaacccagag 969
>gb|BT008831.1| Arabidopsis thaliana At1g53290 mRNA, complete cds
Length = 1038
Score = 65.9 bits (33), Expect = 8e-009
Identities = 123/153 (80%)
Strand = Plus / Plus
Query: 35 tacttccttcatgcatatgggccaatttatgctttatcagctgacgtggtggctagcttg 94
||||| |||||||| ||||| || ||||||||| | || ||||| ||||| || || |||
Sbjct: 727 tactttcttcatgcttatggcccgatttatgctctctctgctgatgtggtagccagtttg 786
Query: 95 gttgcattgcgaaacaacagtttccgtatgttcagcaacgaggacgttacaattggatcg 154
||||| | || ||||||||| | ||||| | |||||||||||| ||||| || ||
Sbjct: 787 gttgccctcaagaataacagtttcaggatgtttaacaacgaggacgtaacaataggtgcg 846
Query: 155 tggatgcttgctatgaacgtcaaccatgagaac 187
|||||||| || ||||| |||||||| ||||||
Sbjct: 847 tggatgctggcaatgaatgtcaaccacgagaac 879
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 228 ttgctgtttgggacatcccaaaatgctcaggtctatgccacccagag 274
||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 920 ttgctgtttgggacatccctaaatgctcaggtctttgtaacccagag 966
>emb|BX818399.1|CNS0AAJ6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL77ZA05 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1045
Score = 65.9 bits (33), Expect = 8e-009
Identities = 123/153 (80%)
Strand = Plus / Plus
Query: 35 tacttccttcatgcatatgggccaatttatgctttatcagctgacgtggtggctagcttg 94
||||| |||||||| ||||| || ||||||||| | || ||||| ||||| || || |||
Sbjct: 669 tactttcttcatgcttatggcccgatttatgctctctctgctgatgtggtagccagtttg 728
Query: 95 gttgcattgcgaaacaacagtttccgtatgttcagcaacgaggacgttacaattggatcg 154
||||| | || ||||||||| | ||||| | |||||||||||| ||||| || ||
Sbjct: 729 gttgccctcaagaataacagtttcaggatgtttaacaacgaggacgtaacaataggtgcg 788
Query: 155 tggatgcttgctatgaacgtcaaccatgagaac 187
|||||||| || ||||| |||||||| ||||||
Sbjct: 789 tggatgctggcaatgaatgtcaaccacgagaac 821
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 228 ttgctgtttgggacatcccaaaatgctcaggtctatgccacccagag 274
||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 862 ttgctgtttgggacatccctaaatgctcaggtctttgtaacccagag 908
>emb|BX818271.1|CNS0AEK9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL6ZG03 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1152
Score = 65.9 bits (33), Expect = 8e-009
Identities = 123/153 (80%)
Strand = Plus / Plus
Query: 35 tacttccttcatgcatatgggccaatttatgctttatcagctgacgtggtggctagcttg 94
||||| |||||||| ||||| || ||||||||| | || ||||| ||||| || || |||
Sbjct: 771 tactttcttcatgcttatggcccgatttatgctctctctgctgatgtggtagccagtttg 830
Query: 95 gttgcattgcgaaacaacagtttccgtatgttcagcaacgaggacgttacaattggatcg 154
||||| | || ||||||||| | ||||| | |||||||||||| ||||| || ||
Sbjct: 831 gttgccctcaagaataacagtttcaggatgtttaacaacgaggacgtaacaataggtgcg 890
Query: 155 tggatgcttgctatgaacgtcaaccatgagaac 187
|||||||| || ||||| |||||||| ||||||
Sbjct: 891 tggatgctggcaatgaatgtcaaccacgagaac 923
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 228 ttgctgtttgggacatcccaaaatgctcaggtctatgccacccagag 274
||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 964 ttgctgtttgggacatccctaaatgctcaggtctttgtaacccagag 1010
>ref|NM_104207.2| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT1G53290 mRNA,
complete cds
Length = 1331
Score = 65.9 bits (33), Expect = 8e-009
Identities = 123/153 (80%)
Strand = Plus / Plus
Query: 35 tacttccttcatgcatatgggccaatttatgctttatcagctgacgtggtggctagcttg 94
||||| |||||||| ||||| || ||||||||| | || ||||| ||||| || || |||
Sbjct: 781 tactttcttcatgcttatggcccgatttatgctctctctgctgatgtggtagccagtttg 840
Query: 95 gttgcattgcgaaacaacagtttccgtatgttcagcaacgaggacgttacaattggatcg 154
||||| | || ||||||||| | ||||| | |||||||||||| ||||| || ||
Sbjct: 841 gttgccctcaagaataacagtttcaggatgtttaacaacgaggacgtaacaataggtgcg 900
Query: 155 tggatgcttgctatgaacgtcaaccatgagaac 187
|||||||| || ||||| |||||||| ||||||
Sbjct: 901 tggatgctggcaatgaatgtcaaccacgagaac 933
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 228 ttgctgtttgggacatcccaaaatgctcaggtctatgccacccagag 274
||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 974 ttgctgtttgggacatccctaaatgctcaggtctttgtaacccagag 1020
>gb|AV820584.1|AV820584 AV820584 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-11-D13 3',
mRNA sequence
Length = 419
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 228 ttgctgtttgggacatcccaaaatgctcaggtctatgccacccagag 274
||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 250 ttgctgtttgggacatccctaaatgctcaggtctttgtaacccagag 204
Score = 60.0 bits (30), Expect = 5e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 110 aacagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatg 169
||||||||| | ||||| | |||||||||||| ||||| || |||||||||| || |||
Sbjct: 368 aacagtttcaggatgtttaacaacgaggacgtaacaataggtgcgtggatgctggcaatg 309
Query: 170 aacgtcaaccatgagaac 187
|| |||||||| ||||||
Sbjct: 308 aatgtcaaccacgagaac 291
>gb|BP585823.1|BP585823 BP585823 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-04-A18 3',
mRNA sequence
Length = 445
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 230 gctgtttgggacatcccaaaatgctcaggtctatgccacccagag 274
||||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 221 gctgtttgggacatccctaaatgctcaggtctttgtaacccagag 177
>gb|AY070398.1| Arabidopsis thaliana putative galactosyltransferase (At3g14960)
mRNA, complete cds
Length = 1429
Score = 58.0 bits (29), Expect = 2e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 107 aacaacagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgct 166
|||||||||||| | ||||| ||||| |||||||| || || || |||||||||| ||
Sbjct: 849 aacaacagtttcaggatgtttagcaatgaggacgtgaccataggtgcgtggatgctggca 908
Query: 167 atgaacgtcaaccatgagaac 187
|||||||| ||||| ||||||
Sbjct: 909 atgaacgttaaccacgagaac 929
>gb|AY133728.1| Arabidopsis thaliana clone U19626 putative galactosyltransferase
(At3g14960) mRNA, complete cds
Length = 1063
Score = 58.0 bits (29), Expect = 2e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 107 aacaacagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgct 166
|||||||||||| | ||||| ||||| |||||||| || || || |||||||||| ||
Sbjct: 793 aacaacagtttcaggatgtttagcaatgaggacgtgaccataggtgcgtggatgctggca 852
Query: 167 atgaacgtcaaccatgagaac 187
|||||||| ||||| ||||||
Sbjct: 853 atgaacgttaaccacgagaac 873
>emb|BX823512.1|CNS0A6KQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS46ZB01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1383
Score = 58.0 bits (29), Expect = 2e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 107 aacaacagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgct 166
|||||||||||| | ||||| ||||| |||||||| || || || |||||||||| ||
Sbjct: 809 aacaacagtttcaggatgtttagcaatgaggacgtgaccataggtgcgtggatgctggca 868
Query: 167 atgaacgtcaaccatgagaac 187
|||||||| ||||| ||||||
Sbjct: 869 atgaacgttaaccacgagaac 889
>emb|BX824144.1|CNS0A6RK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH25ZH09 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1395
Score = 58.0 bits (29), Expect = 2e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 107 aacaacagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgct 166
|||||||||||| | ||||| ||||| |||||||| || || || |||||||||| ||
Sbjct: 838 aacaacagtttcaggatgtttagcaatgaggacgtgaccataggtgcgtggatgctggca 897
Query: 167 atgaacgtcaaccatgagaac 187
|||||||| ||||| ||||||
Sbjct: 898 atgaacgttaaccacgagaac 918
>ref|NM_112358.3| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT3G14960 mRNA,
complete cds
Length = 1444
Score = 58.0 bits (29), Expect = 2e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 107 aacaacagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgct 166
|||||||||||| | ||||| ||||| |||||||| || || || |||||||||| ||
Sbjct: 849 aacaacagtttcaggatgtttagcaatgaggacgtgaccataggtgcgtggatgctggca 908
Query: 167 atgaacgtcaaccatgagaac 187
|||||||| ||||| ||||||
Sbjct: 909 atgaacgttaaccacgagaac 929
>emb|AL953547.1| Arabidopsis thaliana T-DNA flanking sequence GK-352B03-016361,
genomic survey sequence
Length = 594
Score = 56.0 bits (28), Expect = 8e-006
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 112 cagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatgaa 171
||||||| | ||||| | |||||||||||| ||||| || |||||||||| || |||||
Sbjct: 350 cagtttcaggatgtttaacaacgaggacgtaacaataggtgcgtggatgctggcaatgaa 291
Query: 172 cgtcaaccatgagaac 187
|||||||| ||||||
Sbjct: 290 tgtcaaccacgagaac 275
Score = 56.0 bits (28), Expect = 8e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 228 ttgctgtttgggacatcccaaaatgctcaggt 259
||||||||||||||||||| ||||||||||||
Sbjct: 234 ttgctgtttgggacatccctaaatgctcaggt 203
>gb|AC008007.7|AC008007 Genomic sequence for Arabidopsis thaliana BAC F12M16 from chromosome I,
complete sequence
Length = 130235
Score = 56.0 bits (28), Expect = 8e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 228 ttgctgtttgggacatcccaaaatgctcaggt 259
||||||||||||||||||| ||||||||||||
Sbjct: 71932 ttgctgtttgggacatccctaaatgctcaggt 71963
Score = 56.0 bits (28), Expect = 8e-006
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 112 cagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatgaa 171
||||||| | ||||| | |||||||||||| ||||| || |||||||||| || |||||
Sbjct: 71816 cagtttcaggatgtttaacaacgaggacgtaacaataggtgcgtggatgctggcaatgaa 71875
Query: 172 cgtcaaccatgagaac 187
|||||||| ||||||
Sbjct: 71876 tgtcaaccacgagaac 71891
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 56.0 bits (28), Expect = 8e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 228 ttgctgtttgggacatcccaaaatgctcaggt 259
||||||||||||||||||| ||||||||||||
Sbjct: 4232290 ttgctgtttgggacatccctaaatgctcaggt 4232321
Score = 56.0 bits (28), Expect = 8e-006
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 112 cagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatgaa 171
||||||| | ||||| | |||||||||||| ||||| || |||||||||| || |||||
Sbjct: 4232174 cagtttcaggatgtttaacaacgaggacgtaacaataggtgcgtggatgctggcaatgaa 4232233
Query: 172 cgtcaaccatgagaac 187
|||||||| ||||||
Sbjct: 4232234 tgtcaaccacgagaac 4232249
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 56.0 bits (28), Expect = 8e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 228 ttgctgtttgggacatcccaaaatgctcaggt 259
||||||||||||||||||| ||||||||||||
Sbjct: 19876695 ttgctgtttgggacatccctaaatgctcaggt 19876726
Score = 56.0 bits (28), Expect = 8e-006
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 112 cagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatgaa 171
||||||| | ||||| | |||||||||||| ||||| || |||||||||| || |||||
Sbjct: 19876579 cagtttcaggatgtttaacaacgaggacgtaacaataggtgcgtggatgctggcaatgaa 19876638
Query: 172 cgtcaaccatgagaac 187
|||||||| ||||||
Sbjct: 19876639 tgtcaaccacgagaac 19876654
>gb|AV818851.1|AV818851 AV818851 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-01-A09 3',
mRNA sequence
Length = 427
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 228 ttgctgtttgggacatcccaaaatgctcaggtctatgccacccagag 274
||||||||||||| ||||| |||||||||||||| || ||||||||
Sbjct: 250 ttgctgtttgggaaatccctaaatgctcaggtctttgtaacccagag 204
Score = 52.0 bits (26), Expect = 1e-004
Identities = 65/78 (83%)
Strand = Plus / Minus
Query: 110 aacagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatg 169
||||||||| | ||||| | |||||||||||| |||| || |||||||||| || |||
Sbjct: 368 aacagtttcaggatgtttaacaacgaggacgtaacaaaaggtgcgtggatgctggcaatg 309
Query: 170 aacgtcaaccatgagaac 187
|| |||||||| ||||||
Sbjct: 308 aatgtcaaccacgagaac 291
>gb|AV819025.1|AV819025 AV819025 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-01-O12 3',
mRNA sequence
Length = 512
Score = 52.0 bits (26), Expect = 1e-004
Identities = 65/78 (83%)
Strand = Plus / Minus
Query: 110 aacagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgctatg 169
||||||||| | ||||| | |||||||||||| |||| || |||||||||| || |||
Sbjct: 451 aacagtttcaggatgtttaacaacgaggacgtaacaaaaggtgcgtggatgctggcaatg 392
Query: 170 aacgtcaaccatgagaac 187
|| |||||||| ||||||
Sbjct: 391 aatgtcaaccacgagaac 374
>dbj|AP000370.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K15M2
Length = 79279
Score = 52.0 bits (26), Expect = 1e-004
Identities = 122/154 (79%)
Strand = Plus / Minus
Query: 106 aaacaacagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgc 165
|||| |||||||| | ||||| ||||| |||||||| || || || |||||||||| ||
Sbjct: 32631 aaactacagtttcaggatgtttagcaatgaggacgtgaccataggtgcgtggatgctggc 32572
Query: 166 tatgaacgtcaaccatgagaacacacatgcactttgtgaacctgactgcacggagtcttc 225
|||||||| ||||| |||||| || | ||||||||||| || ||| | | ||
Sbjct: 32571 aatgaacgttaaccacgagaaccttcacaccctttgtgaaccagagtgctcaccatactc 32512
Query: 226 aattgctgtttgggacatcccaaaatgctcaggt 259
|||||||||||||| || |||||||||||||||
Sbjct: 32511 cattgctgtttgggatataccaaaatgctcaggt 32478
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 52.0 bits (26), Expect = 1e-004
Identities = 122/154 (79%)
Strand = Plus / Minus
Query: 106 aaacaacagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgc 165
|||| |||||||| | ||||| ||||| |||||||| || || || |||||||||| ||
Sbjct: 5026123 aaactacagtttcaggatgtttagcaatgaggacgtgaccataggtgcgtggatgctggc 5026064
Query: 166 tatgaacgtcaaccatgagaacacacatgcactttgtgaacctgactgcacggagtcttc 225
|||||||| ||||| |||||| || | ||||||||||| || ||| | | ||
Sbjct: 5026063 aatgaacgttaaccacgagaaccttcacaccctttgtgaaccagagtgctcaccatactc 5026004
Query: 226 aattgctgtttgggacatcccaaaatgctcaggt 259
|||||||||||||| || |||||||||||||||
Sbjct: 5026003 cattgctgtttgggatataccaaaatgctcaggt 5025970
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 52.0 bits (26), Expect = 1e-004
Identities = 122/154 (79%)
Strand = Plus / Minus
Query: 106 aaacaacagtttccgtatgttcagcaacgaggacgttacaattggatcgtggatgcttgc 165
|||| |||||||| | ||||| ||||| |||||||| || || || |||||||||| ||
Sbjct: 5036606 aaactacagtttcaggatgtttagcaatgaggacgtgaccataggtgcgtggatgctggc 5036547
Query: 166 tatgaacgtcaaccatgagaacacacatgcactttgtgaacctgactgcacggagtcttc 225
|||||||| ||||| |||||| || | ||||||||||| || ||| | | ||
Sbjct: 5036546 aatgaacgttaaccacgagaaccttcacaccctttgtgaaccagagtgctcaccatactc 5036487
Query: 226 aattgctgtttgggacatcccaaaatgctcaggt 259
|||||||||||||| || |||||||||||||||
Sbjct: 5036486 cattgctgtttgggatataccaaaatgctcaggt 5036453
>gb|AV533284.1|AV533284 AV533284 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB059a10F 3', mRNA sequence
Length = 482
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 227 attgctgtttgggacatcccaaaatgctcagg 258
|||||||||||||| || ||||||||||||||
Sbjct: 457 attgctgtttgggatataccaaaatgctcagg 426
>gb|AV535427.1|AV535427 AV535427 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB096b09F 3', mRNA sequence
Length = 545
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 227 attgctgtttgggacatcccaaaatgctcagg 258
|||||||||||||| || ||||||||||||||
Sbjct: 476 attgctgtttgggatataccaaaatgctcagg 445
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 341,954
Number of Sequences: 1013581
Number of extensions: 341954
Number of successful extensions: 23715
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23180
Number of HSP's gapped (non-prelim): 535
length of query: 667
length of database: 908,940,872
effective HSP length: 20
effective length of query: 647
effective length of database: 888,669,252
effective search space: 574969006044
effective search space used: 574969006044
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)