BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4695478.2.1
(1201 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL485807.1|CL485807 SAIL_423_D05.v1 SAIL Collection Arab... 44 0.055
gb|CL485812.1|CL485812 SAIL_423_E05.v1 SAIL Collection Arab... 44 0.055
gb|BE522400.1|BE522400 M25F11STM Arabidopsis developing see... 44 0.055
gb|BE845087.1|BE845087 AD06E01M13R AD A. thaliana (Col-0 gl... 44 0.055
gb|AV822159.1|AV822159 AV822159 RAFL5 Arabidopsis thaliana ... 44 0.055
gb|AV532425.1|AV532425 AV532425 Arabidopsis thaliana flower... 44 0.055
gb|AV540919.1|AV540919 AV540919 Arabidopsis thaliana roots ... 44 0.055
gb|AV550353.1|AV550353 AV550353 Arabidopsis thaliana roots ... 44 0.055
gb|BP560824.1|BP560824 BP560824 RAFL5 Arabidopsis thaliana ... 44 0.055
gb|CB252385.1|CB252385 27-E013702-019-004-B01Q-T7R MPIZ-ADI... 44 0.055
gb|CB253432.1|CB253432 01-E012999-019-004-B01-T7R MPIZ-ADIS... 44 0.055
gb|BP798246.1|BP798246 BP798246 RAFL14 Arabidopsis thaliana... 44 0.055
gb|BP798678.1|BP798678 BP798678 RAFL14 Arabidopsis thaliana... 44 0.055
gb|BP800170.1|BP800170 BP800170 RAFL14 Arabidopsis thaliana... 44 0.055
gb|BP808858.1|BP808858 BP808858 RAFL16 Arabidopsis thaliana... 44 0.055
gb|BP843227.1|BP843227 BP843227 RAFL21 Arabidopsis thaliana... 44 0.055
gb|AF296837.1|F7K24 Arabidopsis thaliana BAC F7K24 44 0.055
emb|AJ523670.1|ATH523670 Arabidopsis thaliana T-DNA flankin... 44 0.055
gb|AY088448.1| Arabidopsis thaliana clone 6748 mRNA, comple... 44 0.055
gb|AC012394.3|AC012394 Arabidopsis thaliana chromosome 1 BA... 44 0.055
gb|AC015450.5|AC015450 Arabidopsis thaliana chromosome 1 BA... 44 0.055
emb|BX833200.1|CNS09YNN Arabidopsis thaliana Full-length cD... 44 0.055
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 44 0.055
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 44 0.055
ref|NM_106297.1| Arabidopsis thaliana cinnamoyl-CoA reducta... 44 0.055
ref|NM_121949.2| Arabidopsis thaliana alcohol dehydrogenase... 44 0.055
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 44 0.055
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 44 0.055
>gb|CL485807.1|CL485807 SAIL_423_D05.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_423_D05.v1, DNA sequence
Length = 916
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 126 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 81
>gb|CL485812.1|CL485812 SAIL_423_E05.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_423_E05.v1, DNA sequence
Length = 948
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 130 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 85
>gb|BE522400.1|BE522400 M25F11STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone
M25F11 5', mRNA sequence
Length = 372
Score = 44.1 bits (22), Expect = 0.055
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 983 acggtgccgtggacggtgtagccacgggagaggaggagcttgacgagcca 1032
||||| || ||||| ||||||||||| ||||| || | ||||||||||||
Sbjct: 130 acggttccatggacagtgtagccacgagagagaagaaacttgacgagcca 81
>gb|BE845087.1|BE845087 AD06E01M13R AD A. thaliana (Col-0 gl1) subtracted library enriched
for salt-induced transcripts;10-14 day seedlings 4h 160mM
NaCl stress Arabidopsis thaliana cDNA clone AD06E01
similar to cinnamyl-alcohol dehydrogenase (EC 1.1.1.195),
mRNA sequence
Length = 373
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 133 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 88
>gb|AV822159.1|AV822159 AV822159 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-02-D19 5', mRNA
sequence
Length = 663
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 166 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 121
>gb|AV532425.1|AV532425 AV532425 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB042a07F 3', mRNA sequence
Length = 612
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 171 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 126
>gb|AV540919.1|AV540919 AV540919 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ157c06F 3', mRNA sequence
Length = 593
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 139 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 94
>gb|AV550353.1|AV550353 AV550353 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ111c01R 5', mRNA sequence
Length = 521
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 133 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 88
>gb|BP560824.1|BP560824 BP560824 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-07-P09 5', mRNA
sequence
Length = 657
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 161 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 116
>gb|CB252385.1|CB252385 27-E013702-019-004-B01Q-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768B014Q 5-PRIME, mRNA sequence
Length = 643
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 152 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 107
>gb|CB253432.1|CB253432 01-E012999-019-004-B01-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768B014Q 5-PRIME, mRNA sequence
Length = 603
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 152 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 107
>gb|BP798246.1|BP798246 BP798246 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-06-I16 5',
mRNA sequence
Length = 390
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 139 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 94
>gb|BP798678.1|BP798678 BP798678 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-08-B17 5',
mRNA sequence
Length = 394
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 148 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 103
>gb|BP800170.1|BP800170 BP800170 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-14-D04 5',
mRNA sequence
Length = 405
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 162 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 117
>gb|BP808858.1|BP808858 BP808858 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-19-G09 5',
mRNA sequence
Length = 395
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 159 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 114
>gb|BP843227.1|BP843227 BP843227 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-57-G04 5',
mRNA sequence
Length = 379
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 148 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 103
>gb|AF296837.1|F7K24 Arabidopsis thaliana BAC F7K24
Length = 103024
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 83706 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 83661
>emb|AJ523670.1|ATH523670 Arabidopsis thaliana T-DNA flanking sequence, left border, clone
059G07
Length = 405
Score = 44.1 bits (22), Expect = 0.055
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 983 acggtgccgtggacggtgtagccacgggagaggaggagcttgacgagcca 1032
||||| || ||||| ||||||||||| ||||| || | ||||||||||||
Sbjct: 73 acggttccatggacagtgtagccacgagagagaagaaacttgacgagcca 122
>gb|AY088448.1| Arabidopsis thaliana clone 6748 mRNA, complete sequence
Length = 1205
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 164 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 119
>gb|AC012394.3|AC012394 Arabidopsis thaliana chromosome 1 BAC F15M4 genomic sequence, complete
sequence
Length = 94487
Score = 44.1 bits (22), Expect = 0.055
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 983 acggtgccgtggacggtgtagccacgggagaggaggagcttgacgagcca 1032
||||| || ||||| ||||||||||| ||||| || | ||||||||||||
Sbjct: 14159 acggttccatggacagtgtagccacgagagagaagaaacttgacgagcca 14110
>gb|AC015450.5|AC015450 Arabidopsis thaliana chromosome 1 BAC F14G6 genomic sequence, complete
sequence
Length = 100806
Score = 44.1 bits (22), Expect = 0.055
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 983 acggtgccgtggacggtgtagccacgggagaggaggagcttgacgagcca 1032
||||| || ||||| ||||||||||| ||||| || | ||||||||||||
Sbjct: 27604 acggttccatggacagtgtagccacgagagagaagaaacttgacgagcca 27653
>emb|BX833200.1|CNS09YNN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL39ZA05 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1140
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 139 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 94
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 6277716 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 6277671
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 44.1 bits (22), Expect = 0.055
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 983 acggtgccgtggacggtgtagccacgggagaggaggagcttgacgagcca 1032
||||| || ||||| ||||||||||| ||||| || | ||||||||||||
Sbjct: 12932516 acggttccatggacagtgtagccacgagagagaagaaacttgacgagcca 12932565
>ref|NM_106297.1| Arabidopsis thaliana cinnamoyl-CoA reductase AT1G76470 mRNA, complete
cds
Length = 983
Score = 44.1 bits (22), Expect = 0.055
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 983 acggtgccgtggacggtgtagccacgggagaggaggagcttgacgagcca 1032
||||| || ||||| ||||||||||| ||||| || | ||||||||||||
Sbjct: 133 acggttccatggacagtgtagccacgagagagaagaaacttgacgagcca 84
>ref|NM_121949.2| Arabidopsis thaliana alcohol dehydrogenase AT5G19440 mRNA, complete
cds
Length = 1273
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 171 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 126
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 44.1 bits (22), Expect = 0.055
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 998 gtgtagccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|||||||||||| || |||| |||||||||||| ||||||||||
Sbjct: 6556592 gtgtagccacggctaagtaggaacttgacgagccatgaggcgatgt 6556547
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 44.1 bits (22), Expect = 0.055
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 983 acggtgccgtggacggtgtagccacgggagaggaggagcttgacgagcca 1032
||||| || ||||| ||||||||||| ||||| || | ||||||||||||
Sbjct: 28696196 acggttccatggacagtgtagccacgagagagaagaaacttgacgagcca 28696245
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 448,673
Number of Sequences: 1013581
Number of extensions: 448673
Number of successful extensions: 32110
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31478
Number of HSP's gapped (non-prelim): 632
length of query: 1201
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1181
effective length of database: 888,669,252
effective search space: 1049518386612
effective search space used: 1049518386612
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)