BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 44956.2.1
(1252 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV826244.1|AV826244 AV826244 RAFL8 Arabidopsis thaliana ... 98 4e-018
gb|BU635847.1|BU635847 039D03 Infected Arabidopsis Leaf Ara... 96 2e-017
gb|AF324985.2|AF324985 Arabidopsis thaliana At1g24360 (At1g... 96 2e-017
gb|AY059816.1| Arabidopsis thaliana Unknown protein mRNA, c... 96 2e-017
gb|AY081491.1| Arabidopsis thaliana unknown protein mRNA, c... 96 2e-017
emb|BX814556.1|CNS0AC9J Arabidopsis thaliana Full-length cD... 96 2e-017
emb|CQ804278.1| Sequence 689 from Patent WO2004035798 96 2e-017
ref|NM_102282.2| Arabidopsis thaliana 3-oxoacyl-[acyl-carri... 96 2e-017
gb|BX837497.1|BX837497 BX837497 Arabidopsis thaliana Adult ... 92 3e-016
gb|AV562917.1|AV562917 AV562917 Arabidopsis thaliana green ... 92 3e-016
gb|CK118953.1|CK118953 215e04.p1 AtM1 Arabidopsis thaliana ... 88 4e-015
emb|X64464.1|ATBORED A.thaliana mRNA for beta-oxoacyl-(acyl... 88 4e-015
gb|Z37189.1|Z37189 ATTS3932 Strasbourg-A Arabidopsis thalia... 86 2e-014
gb|BU636314.1|BU636314 049D05 Infected Arabidopsis Leaf Ara... 86 2e-014
gb|BU635688.1|BU635688 031D05 Infected Arabidopsis Leaf Ara... 84 7e-014
gb|AV828553.1|AV828553 AV828553 RAFL9 Arabidopsis thaliana ... 80 1e-012
gb|BE526676.1|BE526676 M66G17STM Arabidopsis developing see... 76 2e-011
gb|BE528722.1|BE528722 M72E22STM Arabidopsis developing see... 74 6e-011
gb|AV564467.1|AV564467 AV564467 Arabidopsis thaliana green ... 74 6e-011
gb|AV828060.1|AV828060 AV828060 RAFL9 Arabidopsis thaliana ... 66 2e-008
emb|BX816691.1|CNS0ABTF Arabidopsis thaliana Full-length cD... 62 2e-007
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 58 4e-006
gb|AC002396.1| Arabidopsis thaliana chromosome I BAC F3I6 g... 58 4e-006
gb|AC000103.2|AC000103 Genomic sequence for Arabidopsis tha... 58 4e-006
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 58 4e-006
gb|AV441784.1|AV441784 AV441784 Arabidopsis thaliana above-... 56 2e-005
gb|B08603.1|B08603 F3I6-T7 IGF Arabidopsis thaliana genomic... 52 2e-004
gb|Z37491.1|Z37491 ATTS3910 Strasbourg-A Arabidopsis thalia... 52 2e-004
gb|AA712781.1|AA712781 32340 Lambda-PRL2 Arabidopsis thalia... 52 2e-004
gb|AI998837.1|AI998837 701547066 A. thaliana, Columbia Col-... 52 2e-004
gb|BE523546.1|BE523546 M38E4STM Arabidopsis developing seed... 52 2e-004
gb|AV789586.1|AV789586 AV789586 RAFL6 Arabidopsis thaliana ... 52 2e-004
gb|AV789714.1|AV789714 AV789714 RAFL6 Arabidopsis thaliana ... 52 2e-004
gb|AV790526.1|AV790526 AV790526 RAFL6 Arabidopsis thaliana ... 52 2e-004
gb|AV794147.1|AV794147 AV794147 RAFL8 Arabidopsis thaliana ... 52 2e-004
gb|AV799789.1|AV799789 AV799789 RAFL9 Arabidopsis thaliana ... 52 2e-004
gb|AV801820.1|AV801820 AV801820 RAFL9 Arabidopsis thaliana ... 52 2e-004
gb|AV809999.1|AV809999 AV809999 RAFL9 Arabidopsis thaliana ... 52 2e-004
gb|AV813984.1|AV813984 AV813984 RAFL9 Arabidopsis thaliana ... 52 2e-004
gb|AV439515.1|AV439515 AV439515 Arabidopsis thaliana above-... 52 2e-004
gb|AV519501.1|AV519501 AV519501 Arabidopsis thaliana aboveg... 52 2e-004
gb|AV538060.1|AV538060 AV538060 Arabidopsis thaliana roots ... 52 2e-004
gb|AV538816.1|AV538816 AV538816 Arabidopsis thaliana roots ... 52 2e-004
gb|AV559576.1|AV559576 AV559576 Arabidopsis thaliana green ... 52 2e-004
gb|AV563492.1|AV563492 AV563492 Arabidopsis thaliana green ... 52 2e-004
gb|AV563847.1|AV563847 AV563847 Arabidopsis thaliana green ... 52 2e-004
gb|AV565925.1|AV565925 AV565925 Arabidopsis thaliana green ... 52 2e-004
gb|BP564068.1|BP564068 BP564068 RAFL14 Arabidopsis thaliana... 52 2e-004
gb|BP584014.1|BP584014 BP584014 RAFL14 Arabidopsis thaliana... 52 2e-004
gb|BP586370.1|BP586370 BP586370 RAFL15 Arabidopsis thaliana... 52 2e-004
gb|BP586683.1|BP586683 BP586683 RAFL15 Arabidopsis thaliana... 52 2e-004
gb|BP587889.1|BP587889 BP587889 RAFL15 Arabidopsis thaliana... 52 2e-004
gb|BP594452.1|BP594452 BP594452 RAFL15 Arabidopsis thaliana... 52 2e-004
gb|BP596053.1|BP596053 BP596053 RAFL15 Arabidopsis thaliana... 52 2e-004
gb|BP603189.1|BP603189 BP603189 RAFL16 Arabidopsis thaliana... 52 2e-004
gb|BP622673.1|BP622673 BP622673 RAFL17 Arabidopsis thaliana... 52 2e-004
gb|BP629387.1|BP629387 BP629387 RAFL17 Arabidopsis thaliana... 52 2e-004
gb|BP777448.1|BP777448 BP777448 RAFL7 Arabidopsis thaliana ... 52 2e-004
gb|BP786767.1|BP786767 BP786767 RAFL7 Arabidopsis thaliana ... 52 2e-004
emb|AJ837422.1| Arabidopsis thaliana T-DNA flanking sequenc... 52 2e-004
gb|BE524789.1|BE524789 M54C8STM Arabidopsis developing seed... 50 0.001
gb|BP843906.1|BP843906 BP843906 RAFL21 Arabidopsis thaliana... 50 0.001
gb|BP859941.1|BP859941 BP859941 RAFL21 Arabidopsis thaliana... 50 0.001
gb|BP867683.1|BP867683 BP867683 RAFL21 Arabidopsis thaliana... 50 0.001
gb|BE529366.1|BE529366 M74C12STM Arabidopsis developing see... 48 0.004
gb|BP570819.1|BP570819 BP570819 RAFL14 Arabidopsis thaliana... 48 0.004
gb|BP595315.1|BP595315 BP595315 RAFL15 Arabidopsis thaliana... 48 0.004
gb|BP849036.1|BP849036 BP849036 RAFL21 Arabidopsis thaliana... 46 0.015
gb|AA394339.1|AA394339 25936 Lambda-PRL2 Arabidopsis thalia... 44 0.058
gb|BP601154.1|BP601154 BP601154 RAFL16 Arabidopsis thaliana... 44 0.058
gb|BP596351.1|BP596351 BP596351 RAFL15 Arabidopsis thaliana... 42 0.23
gb|AY099572.1| Arabidopsis thaliana putative protein (At4g2... 42 0.23
gb|BT003408.1| Arabidopsis thaliana putative protein (At4g2... 42 0.23
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 42 0.23
emb|AL035396.1|ATF24A6 Arabidopsis thaliana DNA chromosome ... 42 0.23
emb|AL079350.1|ATT30C3 Arabidopsis thaliana DNA chromosome ... 42 0.23
emb|AL161563.2|ATCHRIV63 Arabidopsis thaliana DNA chromosom... 42 0.23
ref|NM_118664.3| Arabidopsis thaliana unknown protein AT4G2... 42 0.23
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 42 0.23
>gb|AV826244.1|AV826244 AV826244 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-11-K20 5',
mRNA sequence
Length = 591
Score = 97.6 bits (49), Expect = 4e-018
Identities = 285/364 (78%)
Strand = Plus / Minus
Query: 577 gcctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagat 636
||||| ||||| || || |||||||| ||||||| | |||| || || | ||| || |||
Sbjct: 477 gcctgagtacagagnaatacaccagtgagattcaaagcaatcacttcgtcccattgtgat 418
Query: 637 ttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccagcacatct 696
| |||||| | || ||||| || || || ||||| |||||||| || |||| |||||
Sbjct: 417 tgcttcattcgtattaacaaggtatcccgagtaattcctgcattgttaaccacaacatca 358
Query: 697 attgttccccatttatctagagctgctttcatcatagactctacatcagcttcttttgaa 756
|| ||||||||||| || ||||| | ||||||||| | || ||||||| |||| ||
Sbjct: 357 atggttccccatttgtcaagagcggttttcatcatcgcatccacatcagtcgctttcgag 298
Query: 757 acatctcctccgaaggtgatagcctcaccaccagatgcttcaatctctttggagacctct 816
||||| || || || |||||||||| |||||| || ||||||||| ||| | || |||
Sbjct: 297 acatcacccccaaaagtgatagcctggccaccatattcttcaatctgtttagcaacttct 238
Query: 817 tcagcctctttcgaggaccgggcatagtttaccagaaccttgcatcctgcttttccaagg 876
||||||||||| | |||| ||||| || |||| |||||||| || ||||| || | |
Sbjct: 237 tcagcctcttttgctgacctagcataattcaccaagaccttgcagccagctttacccaag 178
Query: 877 gctagagcagttgccttaccaatccctctagatgcacctgtaacaacaacaactggagct 936
||||||||| |||| |||||||||||||| || ||||| || | ||| || ||||||| |
Sbjct: 177 gctagagcaattgctttaccaatccctctcgaggcaccagtgataacgaccactggagat 118
Query: 937 tcca 940
||||
Sbjct: 117 tcca 114
>gb|BU635847.1|BU635847 039D03 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 615
Score = 95.6 bits (48), Expect = 2e-017
Identities = 285/364 (78%)
Strand = Plus / Minus
Query: 577 gcctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagat 636
||||| ||||| || || |||||||| ||||||| | |||| || || | ||| || |||
Sbjct: 594 gcctgagtacagagaaatacaccagtgagattcaaagcaatcacttcgtcccattgtgat 535
Query: 637 ttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccagcacatct 696
| |||||| | || ||||| || || || ||||| |||||||| || |||| |||||
Sbjct: 534 tgcttcattcgtattaacaaggtatcccgagtaattcctgcattgttaaccacaacatca 475
Query: 697 attgttccccatttatctagagctgctttcatcatagactctacatcagcttcttttgaa 756
|| ||||||||||| || ||||| | ||||||||| | || ||||||| |||| ||
Sbjct: 474 atggttccccatttgtcaagagcggttttcatcatcgcatccacatcagtcgctttcgag 415
Query: 757 acatctcctccgaaggtgatagcctcaccaccagatgcttcaatctctttggagacctct 816
||||| || || || |||||||||| |||||| || ||||||||| ||| | || |||
Sbjct: 414 acatcacccccaaaagtgatagcctggccaccatattcttcaatctgtttagcaacttct 355
Query: 817 tcagcctctttcgaggaccgggcatagtttaccagaaccttgcatcctgcttttccaagg 876
||||||||||| | |||| ||||| || |||| |||||||| || ||||| || | |
Sbjct: 354 tcagcctcttttgctgacctagcataattcaccaagaccttgcagccagctttacccaag 295
Query: 877 gctagagcagttgccttaccaatccctctagatgcacctgtaacaacaacaactggagct 936
||||||||| |||| |||||||||||||| || ||||| || | ||| || ||||||| |
Sbjct: 294 gctagagcaattgctttaccaatccctctcgaggcaccagtgataacgaccactggagat 235
Query: 937 tcca 940
||||
Sbjct: 234 tcca 231
>gb|AF324985.2|AF324985 Arabidopsis thaliana At1g24360 (At1g24360/F21J9_300) mRNA, complete
cds
Length = 1234
Score = 95.6 bits (48), Expect = 2e-017
Identities = 285/364 (78%)
Strand = Plus / Minus
Query: 577 gcctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagat 636
||||| ||||| || || |||||||| ||||||| | |||| || || | ||| || |||
Sbjct: 668 gcctgagtacagagaaatacaccagtgagattcaaagcaatcacttcgtcccattgtgat 609
Query: 637 ttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccagcacatct 696
| |||||| | || ||||| || || || ||||| |||||||| || |||| |||||
Sbjct: 608 tgcttcattcgtattaacaaggtatcccgagtaattcctgcattgttaaccacaacatca 549
Query: 697 attgttccccatttatctagagctgctttcatcatagactctacatcagcttcttttgaa 756
|| ||||||||||| || ||||| | ||||||||| | || ||||||| |||| ||
Sbjct: 548 atggttccccatttgtcaagagcggttttcatcatcgcatccacatcagtcgctttcgag 489
Query: 757 acatctcctccgaaggtgatagcctcaccaccagatgcttcaatctctttggagacctct 816
||||| || || || |||||||||| |||||| || ||||||||| ||| | || |||
Sbjct: 488 acatcacccccaaaagtgatagcctggccaccatattcttcaatctgtttagcaacttct 429
Query: 817 tcagcctctttcgaggaccgggcatagtttaccagaaccttgcatcctgcttttccaagg 876
||||||||||| | |||| ||||| || |||| |||||||| || ||||| || | |
Sbjct: 428 tcagcctcttttgctgacctagcataattcaccaagaccttgcagccagctttacccaag 369
Query: 877 gctagagcagttgccttaccaatccctctagatgcacctgtaacaacaacaactggagct 936
||||||||| |||| |||||||||||||| || ||||| || | ||| || ||||||| |
Sbjct: 368 gctagagcaattgctttaccaatccctctcgaggcaccagtgataacgaccactggagat 309
Query: 937 tcca 940
||||
Sbjct: 308 tcca 305
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 893 tcttctccaagctctgcagtcatgtcagatgcaatgaa 856
>gb|AY059816.1| Arabidopsis thaliana Unknown protein mRNA, complete cds
Length = 1357
Score = 95.6 bits (48), Expect = 2e-017
Identities = 285/364 (78%)
Strand = Plus / Minus
Query: 577 gcctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagat 636
||||| ||||| || || |||||||| ||||||| | |||| || || | ||| || |||
Sbjct: 805 gcctgagtacagagaaatacaccagtgagattcaaagcaatcacttcgtcccattgtgat 746
Query: 637 ttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccagcacatct 696
| |||||| | || ||||| || || || ||||| |||||||| || |||| |||||
Sbjct: 745 tgcttcattcgtattaacaaggtatcccgagtaattcctgcattgttaaccacaacatca 686
Query: 697 attgttccccatttatctagagctgctttcatcatagactctacatcagcttcttttgaa 756
|| ||||||||||| || ||||| | ||||||||| | || ||||||| |||| ||
Sbjct: 685 atggttccccatttgtcaagagcggttttcatcatcgcatccacatcagtcgctttcgag 626
Query: 757 acatctcctccgaaggtgatagcctcaccaccagatgcttcaatctctttggagacctct 816
||||| || || || |||||||||| |||||| || ||||||||| ||| | || |||
Sbjct: 625 acatcacccccaaaagtgatagcctggccaccatattcttcaatctgtttagcaacttct 566
Query: 817 tcagcctctttcgaggaccgggcatagtttaccagaaccttgcatcctgcttttccaagg 876
||||||||||| | |||| ||||| || |||| |||||||| || ||||| || | |
Sbjct: 565 tcagcctcttttgctgacctagcataattcaccaagaccttgcagccagctttacccaag 506
Query: 877 gctagagcagttgccttaccaatccctctagatgcacctgtaacaacaacaactggagct 936
||||||||| |||| |||||||||||||| || ||||| || | ||| || ||||||| |
Sbjct: 505 gctagagcaattgctttaccaatccctctcgaggcaccagtgataacgaccactggagat 446
Query: 937 tcca 940
||||
Sbjct: 445 tcca 442
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 1030 tcttctccaagctctgcagtcatgtcagatgcaatgaa 993
>gb|AY081491.1| Arabidopsis thaliana unknown protein mRNA, complete cds
Length = 1065
Score = 95.6 bits (48), Expect = 2e-017
Identities = 285/364 (78%)
Strand = Plus / Minus
Query: 577 gcctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagat 636
||||| ||||| || || |||||||| ||||||| | |||| || || | ||| || |||
Sbjct: 584 gcctgagtacagagaaatacaccagtgagattcaaagcaatcacttcgtcccattgtgat 525
Query: 637 ttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccagcacatct 696
| |||||| | || ||||| || || || ||||| |||||||| || |||| |||||
Sbjct: 524 tgcttcattcgtattaacaaggtatcccgagtaattcctgcattgttaaccacaacatca 465
Query: 697 attgttccccatttatctagagctgctttcatcatagactctacatcagcttcttttgaa 756
|| ||||||||||| || ||||| | ||||||||| | || ||||||| |||| ||
Sbjct: 464 atggttccccatttgtcaagagcggttttcatcatcgcatccacatcagtcgctttcgag 405
Query: 757 acatctcctccgaaggtgatagcctcaccaccagatgcttcaatctctttggagacctct 816
||||| || || || |||||||||| |||||| || ||||||||| ||| | || |||
Sbjct: 404 acatcacccccaaaagtgatagcctggccaccatattcttcaatctgtttagcaacttct 345
Query: 817 tcagcctctttcgaggaccgggcatagtttaccagaaccttgcatcctgcttttccaagg 876
||||||||||| | |||| ||||| || |||| |||||||| || ||||| || | |
Sbjct: 344 tcagcctcttttgctgacctagcataattcaccaagaccttgcagccagctttacccaag 285
Query: 877 gctagagcagttgccttaccaatccctctagatgcacctgtaacaacaacaactggagct 936
||||||||| |||| |||||||||||||| || ||||| || | ||| || ||||||| |
Sbjct: 284 gctagagcaattgctttaccaatccctctcgaggcaccagtgataacgaccactggagat 225
Query: 937 tcca 940
||||
Sbjct: 224 tcca 221
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 809 tcttctccaagctctgcagtcatgtcagatgcaatgaa 772
>emb|BX814556.1|CNS0AC9J Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB7ZH05 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1300
Score = 95.6 bits (48), Expect = 2e-017
Identities = 285/364 (78%)
Strand = Plus / Minus
Query: 577 gcctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagat 636
||||| ||||| || || |||||||| ||||||| | |||| || || | ||| || |||
Sbjct: 790 gcctgagtacagagaaatacaccagtgagattcaaagcaatcacttcgtcccattgtgat 731
Query: 637 ttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccagcacatct 696
| |||||| | || ||||| || || || ||||| |||||||| || |||| |||||
Sbjct: 730 tgcttcattcgtattaacaaggtatcccgagtaattcctgcattgttaaccacaacatca 671
Query: 697 attgttccccatttatctagagctgctttcatcatagactctacatcagcttcttttgaa 756
|| ||||||||||| || ||||| | ||||||||| | || ||||||| |||| ||
Sbjct: 670 atggttccccatttgtcaagagcggttttcatcatcgcatccacatcagtcgctttcgag 611
Query: 757 acatctcctccgaaggtgatagcctcaccaccagatgcttcaatctctttggagacctct 816
||||| || || || |||||||||| |||||| || ||||||||| ||| | || |||
Sbjct: 610 acatcacccccaaaagtgatagcctggccaccatattcttcaatctgtttagcaacttct 551
Query: 817 tcagcctctttcgaggaccgggcatagtttaccagaaccttgcatcctgcttttccaagg 876
||||||||||| | |||| ||||| || |||| |||||||| || ||||| || | |
Sbjct: 550 tcagcctcttttgctgacctagcataattcaccaagaccttgcagccagctttacccaag 491
Query: 877 gctagagcagttgccttaccaatccctctagatgcacctgtaacaacaacaactggagct 936
||||||||| |||| |||||||||||||| || ||||| || | ||| || ||||||| |
Sbjct: 490 gctagagcaattgctttaccaatccctctcgaggcaccagtgataacgaccactggagat 431
Query: 937 tcca 940
||||
Sbjct: 430 tcca 427
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 1015 tcttctccaagctctgcagtcatgtcagatgcaatgaa 978
>emb|CQ804278.1| Sequence 689 from Patent WO2004035798
Length = 960
Score = 95.6 bits (48), Expect = 2e-017
Identities = 285/364 (78%)
Strand = Plus / Minus
Query: 577 gcctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagat 636
||||| ||||| || || |||||||| ||||||| | |||| || || | ||| || |||
Sbjct: 584 gcctgagtacagagaaatacaccagtgagattcaaagcaatcacttcgtcccattgtgat 525
Query: 637 ttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccagcacatct 696
| |||||| | || ||||| || || || ||||| |||||||| || |||| |||||
Sbjct: 524 tgcttcattcgtattaacaaggtatcccgagtaattcctgcattgttaaccacaacatca 465
Query: 697 attgttccccatttatctagagctgctttcatcatagactctacatcagcttcttttgaa 756
|| ||||||||||| || ||||| | ||||||||| | || ||||||| |||| ||
Sbjct: 464 atggttccccatttgtcaagagcggttttcatcatcgcatccacatcagtcgctttcgag 405
Query: 757 acatctcctccgaaggtgatagcctcaccaccagatgcttcaatctctttggagacctct 816
||||| || || || |||||||||| |||||| || ||||||||| ||| | || |||
Sbjct: 404 acatcacccccaaaagtgatagcctggccaccatattcttcaatctgtttagcaacttct 345
Query: 817 tcagcctctttcgaggaccgggcatagtttaccagaaccttgcatcctgcttttccaagg 876
||||||||||| | |||| ||||| || |||| |||||||| || ||||| || | |
Sbjct: 344 tcagcctcttttgctgacctagcataattcaccaagaccttgcagccagctttacccaag 285
Query: 877 gctagagcagttgccttaccaatccctctagatgcacctgtaacaacaacaactggagct 936
||||||||| |||| |||||||||||||| || ||||| || | ||| || ||||||| |
Sbjct: 284 gctagagcaattgctttaccaatccctctcgaggcaccagtgataacgaccactggagat 225
Query: 937 tcca 940
||||
Sbjct: 224 tcca 221
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 809 tcttctccaagctctgcagtcatgtcagatgcaatgaa 772
>ref|NM_102282.2| Arabidopsis thaliana 3-oxoacyl-[acyl-carrier protein] reductase
AT1G24360 mRNA, complete cds
Length = 1239
Score = 95.6 bits (48), Expect = 2e-017
Identities = 285/364 (78%)
Strand = Plus / Minus
Query: 577 gcctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagat 636
||||| ||||| || || |||||||| ||||||| | |||| || || | ||| || |||
Sbjct: 668 gcctgagtacagagaaatacaccagtgagattcaaagcaatcacttcgtcccattgtgat 609
Query: 637 ttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccagcacatct 696
| |||||| | || ||||| || || || ||||| |||||||| || |||| |||||
Sbjct: 608 tgcttcattcgtattaacaaggtatcccgagtaattcctgcattgttaaccacaacatca 549
Query: 697 attgttccccatttatctagagctgctttcatcatagactctacatcagcttcttttgaa 756
|| ||||||||||| || ||||| | ||||||||| | || ||||||| |||| ||
Sbjct: 548 atggttccccatttgtcaagagcggttttcatcatcgcatccacatcagtcgctttcgag 489
Query: 757 acatctcctccgaaggtgatagcctcaccaccagatgcttcaatctctttggagacctct 816
||||| || || || |||||||||| |||||| || ||||||||| ||| | || |||
Sbjct: 488 acatcacccccaaaagtgatagcctggccaccatattcttcaatctgtttagcaacttct 429
Query: 817 tcagcctctttcgaggaccgggcatagtttaccagaaccttgcatcctgcttttccaagg 876
||||||||||| | |||| ||||| || |||| |||||||| || ||||| || | |
Sbjct: 428 tcagcctcttttgctgacctagcataattcaccaagaccttgcagccagctttacccaag 369
Query: 877 gctagagcagttgccttaccaatccctctagatgcacctgtaacaacaacaactggagct 936
||||||||| |||| |||||||||||||| || ||||| || | ||| || ||||||| |
Sbjct: 368 gctagagcaattgctttaccaatccctctcgaggcaccagtgataacgaccactggagat 309
Query: 937 tcca 940
||||
Sbjct: 308 tcca 305
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 893 tcttctccaagctctgcagtcatgtcagatgcaatgaa 856
>gb|BX837497.1|BX837497 BX837497 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS27ZD06 5PRIM, mRNA
sequence
Length = 966
Score = 91.7 bits (46), Expect = 3e-016
Identities = 217/274 (79%)
Strand = Plus / Minus
Query: 667 gtaatccctgcattatttaccagcacatctattgttccccatttatctagagctgctttc 726
||||| |||||||| || |||| ||||| || ||||||||||| || ||||| | ||||
Sbjct: 626 gtaattcctgcattgttaaccacaacatcaatggttccccatttgtcaagagcggttttc 567
Query: 727 atcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatagcctcacca 786
||||| | || ||||||| |||| || ||||| || || || |||||||||| |||
Sbjct: 566 atcatcgcatccacatcagtcgctttcgagacatcacccccaaaagtgatagcctggcca 507
Query: 787 ccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatagttt 846
||| || ||||||||| ||| | || |||||||||||||| | |||| ||||| ||
Sbjct: 506 ccatattcttcaatctgtttagcaacttcttcagcctcttttgctgacctagcataattc 447
Query: 847 accagaaccttgcatcctgcttttccaagggctagagcagttgccttaccaatccctcta 906
|||| |||||||| || ||||| || | |||||||||| |||| ||||||||||||||
Sbjct: 446 accaagaccttgcagccagctttacccaaggctagagcaattgctttaccaatccctctc 387
Query: 907 gatgcacctgtaacaacaacaactggagcttcca 940
|| ||||| || | ||| || ||||||| |||||
Sbjct: 386 gaggcaccagtgataacgaccactggagattcca 353
>gb|AV562917.1|AV562917 AV562917 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ178b09F 3', mRNA sequence
Length = 588
Score = 91.7 bits (46), Expect = 3e-016
Identities = 217/274 (79%)
Strand = Plus / Minus
Query: 667 gtaatccctgcattatttaccagcacatctattgttccccatttatctagagctgctttc 726
||||| |||||||| || |||| ||||| || ||||||||||| || ||||| | ||||
Sbjct: 559 gtaattcctgcattgttaaccacaacatcaatggttccccatttgtcaagagcggttttc 500
Query: 727 atcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatagcctcacca 786
||||| | || ||||||| |||| || ||||| || || || |||||||||| |||
Sbjct: 499 atcatcgcatccacatcagtcgctttcgagacatcacccccaaaagtgatagcctggcca 440
Query: 787 ccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatagttt 846
||| || ||||||||| ||| | || |||||||||||||| | |||| ||||| ||
Sbjct: 439 ccatattcttcaatctgtttagcaacttcttcagcctcttttgctgacctagcataattc 380
Query: 847 accagaaccttgcatcctgcttttccaagggctagagcagttgccttaccaatccctcta 906
|||| |||||||| || ||||| || | |||||||||| |||| ||||||||||||||
Sbjct: 379 accaagaccttgcagccagctttacccaaggctagagcaattgctttaccaatccctctc 320
Query: 907 gatgcacctgtaacaacaacaactggagcttcca 940
|| ||||| || | ||| || ||||||| |||||
Sbjct: 319 gaggcaccagtgataacgaccactggagattcca 286
>gb|CK118953.1|CK118953 215e04.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011E04215
5-PRIME, mRNA sequence
Length = 538
Score = 87.7 bits (44), Expect = 4e-015
Identities = 257/328 (78%)
Strand = Plus / Minus
Query: 577 gcctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagat 636
||||| ||||| || || |||||||| ||||||| | |||| || || | ||| || |||
Sbjct: 328 gcctgagtacagagaaatacaccagtgagattcaaagcaatcacttcgtcccattgtgat 269
Query: 637 ttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccagcacatct 696
| |||||| | || ||||| || || || ||||| |||||||| || |||| |||||
Sbjct: 268 tgcttcattcgtattaacaaggtatcccgagtaattcctgcattgttaaccacaacatca 209
Query: 697 attgttccccatttatctagagctgctttcatcatagactctacatcagcttcttttgaa 756
|| ||||||||||| || ||||| | ||||||||| | || ||||||| |||| ||
Sbjct: 208 atggttccccatttgtcaagagcggttttcatcatcgcatccacatcagtcgctttcgag 149
Query: 757 acatctcctccgaaggtgatagcctcaccaccagatgcttcaatctctttggagacctct 816
||||| || || || |||||||||| |||||| || ||||||||| ||| | || |||
Sbjct: 148 acatcacccccaaaagtgatagcctggccaccatattcttcaatctgtttagcaacttct 89
Query: 817 tcagcctctttcgaggaccgggcatagtttaccagaaccttgcatcctgcttttccaagg 876
||||||||||| | |||| ||||| || |||| |||||||| || ||||| || | |
Sbjct: 88 tcagcctcttttgctgacctagcataattcaccaagaccttgcagccagctttacccaag 29
Query: 877 gctagagcagttgccttaccaatccctc 904
||||||||| |||| |||||||||||||
Sbjct: 28 gctagagcaattgctttaccaatccctc 1
>emb|X64464.1|ATBORED A.thaliana mRNA for beta-oxoacyl-(acyl carrier protein) reductase
Length = 1208
Score = 87.7 bits (44), Expect = 4e-015
Identities = 284/364 (78%)
Strand = Plus / Minus
Query: 577 gcctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagat 636
||||| ||||| || || |||||||| ||||||| | |||| || || | ||| || |||
Sbjct: 664 gcctgagtacagagaaatacaccagtgagattcaaagcaatcacttcgtcccattgtgat 605
Query: 637 ttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccagcacatct 696
| |||||| | || ||||| || || || ||||| |||||||| || |||| |||||
Sbjct: 604 tgcttcattcgtattaacaaggtatcccgagtaattcctgcattgttaaccacaacatca 545
Query: 697 attgttccccatttatctagagctgctttcatcatagactctacatcagcttcttttgaa 756
|| ||||||||||| || ||||| | ||||||||| | || ||||||| |||| ||
Sbjct: 544 atggttccccatttgtcaagagcggttttcatcatcgcatccacatcagtcgctttcgag 485
Query: 757 acatctcctccgaaggtgatagcctcaccaccagatgcttcaatctctttggagacctct 816
||||| || || || |||||||||| |||||| || ||||||||| ||| | || |||
Sbjct: 484 acatcacccccaaaagtgatagcctggccaccatattcttcaatctgtttagcaacttct 425
Query: 817 tcagcctctttcgaggaccgggcatagtttaccagaaccttgcatcctgcttttccaagg 876
|||||||| || | |||| ||||| || |||| |||||||| || ||||| || | |
Sbjct: 424 tcagcctcctttgctgacctagcataattcaccaagaccttgcagccagctttacccaag 365
Query: 877 gctagagcagttgccttaccaatccctctagatgcacctgtaacaacaacaactggagct 936
||||||||| |||| |||||||||||||| || ||||| || | ||| || ||||||| |
Sbjct: 364 gctagagcaattgctttaccaatccctctcgaggcaccagtgataacgaccactggagat 305
Query: 937 tcca 940
||||
Sbjct: 304 tcca 301
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 889 tcttctccaagctctgcagtcatgtcagatgcaatgaa 852
>gb|Z37189.1|Z37189 ATTS3932 Strasbourg-A Arabidopsis thaliana cDNA clone FAFM89, mRNA
sequence
Length = 347
Score = 85.7 bits (43), Expect = 2e-014
Identities = 256/327 (78%)
Strand = Plus / Minus
Query: 577 gcctgtgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagat 636
||||| ||||| || || |||||||| ||||||| | |||| || || | ||| || |||
Sbjct: 327 gcctgagtacagagaaatacaccagtgagattcaaagcaatcacttcgtcccattgtgat 268
Query: 637 ttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccagcacatct 696
| |||||| | || ||||| || || || ||||| |||||||| || |||| |||||
Sbjct: 267 tgcttcattcgtattaacaaggtatcccgagtaattcctgcattgttaaccacaacatca 208
Query: 697 attgttccccatttatctagagctgctttcatcatagactctacatcagcttcttttgaa 756
|| ||||||||||| || ||||| | ||||||||| | || ||||||| |||| ||
Sbjct: 207 atggttccccatttgtcaagagcggttttcatcatcgcatccacatcagtcgctttcgag 148
Query: 757 acatctcctccgaaggtgatagcctcaccaccagatgcttcaatctctttggagacctct 816
||||| || || || |||||||||| |||||| || ||||||||| ||| | || |||
Sbjct: 147 acatcacccccaaaagtgatagcctggccaccatattcttcaatctgtttagcaacttct 88
Query: 817 tcagcctctttcgaggaccgggcatagtttaccagaaccttgcatcctgcttttccaagg 876
||||||||||| | |||| ||||| || |||| |||||||| || ||||| || | |
Sbjct: 87 tcagcctcttttgctgacctagcataattcaccaagaccttgcagccagctttacccaag 28
Query: 877 gctagagcagttgccttaccaatccct 903
||||||||| |||| ||||||||||||
Sbjct: 27 gctagagcaattgctttaccaatccct 1
>gb|BU636314.1|BU636314 049D05 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 647
Score = 85.7 bits (43), Expect = 2e-014
Identities = 218/275 (79%), Gaps = 1/275 (0%)
Strand = Plus / Minus
Query: 667 gtaatccctgcattatttaccagcacatctattgttccccatttatctagagctgctttc 726
||||| |||||||| || |||| ||||| || ||||||||||| || ||||| | ||||
Sbjct: 571 gtaattcctgcattgttaaccacaacatcaatggttccccatttgtcaagagcggttttc 512
Query: 727 atcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatagcctcacca 786
||||| | || ||||||| |||| || ||||| || || || |||||||||| |||
Sbjct: 511 atcatcgcatccacatcagtcgctttcgagacatcacccccaaaagtgatagcctggcca 452
Query: 787 ccagatgcttcaatctctttgg-agacctcttcagcctctttcgaggaccgggcatagtt 845
||| || ||||||||| ||| | | || |||||||||||||| | |||| ||||| ||
Sbjct: 451 ccatattcttcaatctgtttagcaaacttcttcagcctcttttgctgacctagcataatt 392
Query: 846 taccagaaccttgcatcctgcttttccaagggctagagcagttgccttaccaatccctct 905
|||| |||||||| || ||||| || | |||||||||| |||| ||||||||||||||
Sbjct: 391 caccaagaccttgcagccagctttacccaaggctagagcaattgctttaccaatccctct 332
Query: 906 agatgcacctgtaacaacaacaactggagcttcca 940
|| ||||| || | ||| || ||||||| |||||
Sbjct: 331 cgaggcaccagtgataacgaccactggagattcca 297
>gb|BU635688.1|BU635688 031D05 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 708
Score = 83.8 bits (42), Expect = 7e-014
Identities = 198/250 (79%)
Strand = Plus / Minus
Query: 691 acatctattgttccccatttatctagagctgctttcatcatagactctacatcagcttct 750
||||| || ||||||||||| || ||||| | ||||||||| | || ||||||| ||
Sbjct: 621 acatcaatggttccccatttgtcaagagcggttttcatcatcgcatccacatcagtcgct 562
Query: 751 tttgaaacatctcctccgaaggtgatagcctcaccaccagatgcttcaatctctttggag 810
|| || ||||| || || || |||||||||| |||||| || ||||||||| ||| |
Sbjct: 561 ttcgagacatcacccccaaaagtgatagcctggccaccatattcttcaatctgtttagca 502
Query: 811 acctcttcagcctctttcgaggaccgggcatagtttaccagaaccttgcatcctgctttt 870
|| |||||||||||||| | |||| ||||| || |||| |||||||| || |||||
Sbjct: 501 acttcttcagcctcttttgctgacctagcataattcaccaagaccttgcagccagcttta 442
Query: 871 ccaagggctagagcagttgccttaccaatccctctagatgcacctgtaacaacaacaact 930
|| | |||||||||| |||| |||||||||||||| || ||||| || | ||| || |||
Sbjct: 441 cccaaggctagagcaattgctttaccaatccctctcgaggcaccagtgataacgaccact 382
Query: 931 ggagcttcca 940
|||| |||||
Sbjct: 381 ggagattcca 372
>gb|AV828553.1|AV828553 AV828553 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-29-L04 5',
mRNA sequence
Length = 599
Score = 79.8 bits (40), Expect = 1e-012
Identities = 216/274 (78%), Gaps = 1/274 (0%)
Strand = Plus / Minus
Query: 667 gtaatccctgcattatttaccagcacatctattgttccccatttatctagagctgctttc 726
||||| || ||||| || |||| ||||| || ||||||||||| || ||||| | ||||
Sbjct: 589 gtaattccngcattgttaaccacaacatcaatggttccccatttgtcaagagcgg-tttc 531
Query: 727 atcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatagcctcacca 786
||||| | || ||||||| |||| || ||||| || || || |||||||||| |||
Sbjct: 530 atcatcgcatccacatcagtcgctttngagacatcacccccaaaagtgatagcctggcca 471
Query: 787 ccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatagttt 846
||| || ||||||||| ||| | || |||||||||||||| | |||| ||||| ||
Sbjct: 470 ccatattcttcaatctgtttagcaacttcttcagcctcttttgctgacctagcataattc 411
Query: 847 accagaaccttgcatcctgcttttccaagggctagagcagttgccttaccaatccctcta 906
|||| |||||||| || ||||| || | |||||||||| |||| ||||||||||||||
Sbjct: 410 accaagaccttgcagccagctttacccaaggctagagcaattgctttaccaatccctctc 351
Query: 907 gatgcacctgtaacaacaacaactggagcttcca 940
|| ||||| || | ||| || ||||||| |||||
Sbjct: 350 gaggcaccagtgataacgaccactggagattcca 317
>gb|BE526676.1|BE526676 M66G17STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600035368R1 5', mRNA sequence
Length = 251
Score = 75.8 bits (38), Expect = 2e-011
Identities = 188/238 (78%)
Strand = Plus / Minus
Query: 703 ccccatttatctagagctgctttcatcatagactctacatcagcttcttttgaaacatct 762
|||||||| || ||||| | ||||||||| | || ||||||| |||| || |||||
Sbjct: 251 ccccatttgtcaagagcggttttcatcatcgcatccacatcagtcgctttcgagacatca 192
Query: 763 cctccgaaggtgatagcctcaccaccagatgcttcaatctctttggagacctcttcagcc 822
|| || || |||||||||| |||||| || ||||||||| ||| | || |||||||||
Sbjct: 191 cccccaaaagtgatagcctggccaccatattcttcaatctgtttagcaacttcttcagcc 132
Query: 823 tctttcgaggaccgggcatagtttaccagaaccttgcatcctgcttttccaagggctaga 882
||||| | |||| ||||| || |||| |||||||| || ||||| || | |||||||
Sbjct: 131 tcttttgctgacctagcataattcaccaagaccttgcagccagctttacccaaggctaga 72
Query: 883 gcagttgccttaccaatccctctagatgcacctgtaacaacaacaactggagcttcca 940
||| |||| |||||||||||||| || ||||| || | ||| || ||||||| |||||
Sbjct: 71 gcaattgctttaccaatccctctcgaggcaccagtgataacgaccactggagattcca 14
>gb|BE528722.1|BE528722 M72E22STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600037883R1 5', mRNA sequence
Length = 260
Score = 73.8 bits (37), Expect = 6e-011
Identities = 197/249 (79%), Gaps = 1/249 (0%)
Strand = Plus / Minus
Query: 667 gtaatccctgcattatttaccagcacatctattgttccccatttatctagagctgctttc 726
||||| |||||||| || |||| ||||| || ||||||||||| || ||||| | ||||
Sbjct: 257 gtaattcctgcattgttaaccacaacatcaatggttccccatttgtcaagagcggttttc 198
Query: 727 atcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatagcctcacca 786
||||| | || ||||||| |||| || ||||| || || || |||||||||| |||
Sbjct: 197 atcatcgcatccacatcagtcgctttcgagacatcacccccaaaagtgatagcctggcca 138
Query: 787 ccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatagttt 846
||| || ||||||||| ||| | || |||||||||||||| | |||| ||||| ||
Sbjct: 137 ccatattcttcaatctgtttagcaacttcttcagcctcttttgctgacctagcataattc 78
Query: 847 accagaaccttgcatcctgcttttccaagggctagagcagttgc-cttaccaatccctct 905
|||| |||||||| || ||||| || | |||||||||| |||| ||||||||||||||
Sbjct: 77 accaagaccttgcagccagctttacccaaggctagagcaattgcttttaccaatccctct 18
Query: 906 agatgcacc 914
|| |||||
Sbjct: 17 cgaggcacc 9
>gb|AV564467.1|AV564467 AV564467 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ204h10F 3', mRNA sequence
Length = 506
Score = 73.8 bits (37), Expect = 6e-011
Identities = 136/169 (80%)
Strand = Plus / Minus
Query: 772 gtgatagcctcaccaccagatgcttcaatctctttggagacctcttcagcctctttcgag 831
|||||||||| |||||| || ||||||||| ||| | || |||||||||||||| |
Sbjct: 454 gtgatagcctggccaccatattcttcaatctgtttagcaacttcttcagcctcttttgct 395
Query: 832 gaccgggcatagtttaccagaaccttgcatcctgcttttccaagggctagagcagttgcc 891
|||| ||||| || |||| |||||||| || ||||| || | |||||||||| ||||
Sbjct: 394 gacctagcataattcaccaagaccttgcagccagctttacccaaggctagagcaattgct 335
Query: 892 ttaccaatccctctagatgcacctgtaacaacaacaactggagcttcca 940
|||||||||||||| || ||||| || | ||| || ||||||| |||||
Sbjct: 334 ttaccaatccctctcgaggcaccagtgataacgaccactggagattcca 286
>gb|AV828060.1|AV828060 AV828060 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-23-H15 5',
mRNA sequence
Length = 605
Score = 65.9 bits (33), Expect = 2e-008
Identities = 135/169 (79%)
Strand = Plus / Minus
Query: 772 gtgatagcctcaccaccagatgcttcaatctctttggagacctcttcagcctctttcgag 831
|||||||||| || ||| || ||||||||| ||| | || |||||||||||||| |
Sbjct: 539 gtgatagcctggcccccatattcttcaatctgtttagcaacttcttcagcctcttttgct 480
Query: 832 gaccgggcatagtttaccagaaccttgcatcctgcttttccaagggctagagcagttgcc 891
|||| ||||| || |||| |||||||| || ||||| || | |||||||||| ||||
Sbjct: 479 gacctagcataattcaccaagaccttgcagccagctttacccaaggctagagcaattgct 420
Query: 892 ttaccaatccctctagatgcacctgtaacaacaacaactggagcttcca 940
|||||||||||||| || ||||| || | ||| || ||||||| |||||
Sbjct: 419 ttaccaatccctctcgaggcaccagtgataacgaccactggagattcca 371
>emb|BX816691.1|CNS0ABTF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH63ZB01 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1122
Score = 61.9 bits (31), Expect = 2e-007
Identities = 215/275 (78%), Gaps = 1/275 (0%)
Strand = Plus / Minus
Query: 667 gtaatccctgcattatttaccagcacatctattgttccccatttatctagagctgctttc 726
||||| |||||||| || |||| ||||| || ||||||||||| || ||||| | ||||
Sbjct: 542 gtaattcctgcattgttaaccacaacatcaatggttccccatttgtcaagagcggttttc 483
Query: 727 atcatagactctacatcagcttctttt-gaaacatctcctccgaaggtgatagcctcacc 785
||||| | || ||||||| | || || || ||||| || || || |||||||||| ||
Sbjct: 482 atcatcgcatccacatcagttgctattcgagacatcacccccaaaagtgatagcctggcc 423
Query: 786 accagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatagtt 845
|||| || ||||||||| ||| || |||||||||||||| | |||| |||| ||
Sbjct: 422 accatattcttcaatctgtttatcaacttcttcagcctcttttgctgacctatcataatt 363
Query: 846 taccagaaccttgcatcctgcttttccaagggctagagcagttgccttaccaatccctct 905
|||| |||||||| || |||| || | |||||||||| |||| ||||||||||||||
Sbjct: 362 caccaataccttgcagccatctttacccaaggctagagcaattgctttaccaatccctct 303
Query: 906 agatgcacctgtaacaacaacaactggagcttcca 940
|| ||||| || | ||| || ||||||| |||||
Sbjct: 302 cgaggcaccagtgataacgactactggagattcca 268
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 857 tcttctccaagctctgcagtcatgtcagatgcaatgaa 820
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 58.0 bits (29), Expect = 4e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 852 aaccttgcatcctgcttttccaagggctagagcagttgccttaccaatccctctagatgc 911
||||||||| || ||||| || | |||||||||| |||| |||||||||||||| || ||
Sbjct: 8640970 aaccttgcagccagctttacccaaggctagagcaattgctttaccaatccctctcgaggc 8640911
Query: 912 acctgtaacaacaacaactggagcttcca 940
||| || | ||| || ||||||| |||||
Sbjct: 8640910 accagtgataacgaccactggagattcca 8640882
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 8642671 tcttctccaagctctgcagtcatgtcagatgcaatgaa 8642634
>gb|AC002396.1| Arabidopsis thaliana chromosome I BAC F3I6 genomic sequence, complete
sequence
Length = 122358
Score = 58.0 bits (29), Expect = 4e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 852 aaccttgcatcctgcttttccaagggctagagcagttgccttaccaatccctctagatgc 911
||||||||| || ||||| || | |||||||||| |||| |||||||||||||| || ||
Sbjct: 120526 aaccttgcagccagctttacccaaggctagagcaattgctttaccaatccctctcgaggc 120467
Query: 912 acctgtaacaacaacaactggagcttcca 940
||| || | ||| || ||||||| |||||
Sbjct: 120466 accagtgataacgaccactggagattcca 120438
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 122227 tcttctccaagctctgcagtcatgtcagatgcaatgaa 122190
>gb|AC000103.2|AC000103 Genomic sequence for Arabidopsis thaliana BAC F21J9 from chromosome
I, complete sequence
Length = 99392
Score = 58.0 bits (29), Expect = 4e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 852 aaccttgcatcctgcttttccaagggctagagcagttgccttaccaatccctctagatgc 911
||||||||| || ||||| || | |||||||||| |||| |||||||||||||| || ||
Sbjct: 2040 aaccttgcagccagctttacccaaggctagagcaattgctttaccaatccctctcgaggc 1981
Query: 912 acctgtaacaacaacaactggagcttcca 940
||| || | ||| || ||||||| |||||
Sbjct: 1980 accagtgataacgaccactggagattcca 1952
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 3741 tcttctccaagctctgcagtcatgtcagatgcaatgaa 3704
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 58.0 bits (29), Expect = 4e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 852 aaccttgcatcctgcttttccaagggctagagcagttgccttaccaatccctctagatgc 911
||||||||| || ||||| || | |||||||||| |||| |||||||||||||| || ||
Sbjct: 8641203 aaccttgcagccagctttacccaaggctagagcaattgctttaccaatccctctcgaggc 8641144
Query: 912 acctgtaacaacaacaactggagcttcca 940
||| || | ||| || ||||||| |||||
Sbjct: 8641143 accagtgataacgaccactggagattcca 8641115
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 8642904 tcttctccaagctctgcagtcatgtcagatgcaatgaa 8642867
>gb|AV441784.1|AV441784 AV441784 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APD03g04_r 5', mRNA
sequence
Length = 416
Score = 56.0 bits (28), Expect = 2e-005
Identities = 73/88 (82%)
Strand = Plus / Minus
Query: 853 accttgcatcctgcttttccaagggctagagcagttgccttaccaatccctctagatgca 912
|||||||| || ||||| || | |||||||||| |||| |||||||||||||| || |||
Sbjct: 399 accttgcagccagctttacccaaggctagagcaattgctttaccaatccctctcgaggca 340
Query: 913 cctgtaacaacaacaactggagcttcca 940
|| || | ||| || ||||||| |||||
Sbjct: 339 ccagtgataacgaccactggagattcca 312
>gb|B08603.1|B08603 F3I6-T7 IGF Arabidopsis thaliana genomic clone F3I6, DNA sequence
Length = 924
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 159 tcttctccaagctctgcagtcatgtcagatgcaatgaa 196
>gb|Z37491.1|Z37491 ATTS3910 Strasbourg-A Arabidopsis thaliana cDNA clone FAFM94, mRNA
sequence
Length = 263
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 140 tcttctccaagctctgcagtcatgtcagatgcaatgaa 103
>gb|AA712781.1|AA712781 32340 Lambda-PRL2 Arabidopsis thaliana cDNA clone 198B20T7, mRNA
sequence
Length = 486
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 156 tcttctccaagctctgcagtcatgtcagatgcaatgaa 119
>gb|AI998837.1|AI998837 701547066 A. thaliana, Columbia Col-0, rosette-2 Arabidopsis
thaliana cDNA clone 701547066, mRNA sequence
Length = 577
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 324 tcttctccaagctctgcagtcatgtcagatgcaatgaa 361
>gb|BE523546.1|BE523546 M38E4STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M38E4 5', mRNA sequence
Length = 353
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 284 tcttctccaagctctgcagtcatgtcagatgcaatgaa 247
>gb|AV789586.1|AV789586 AV789586 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-84-D12 3',
mRNA sequence
Length = 409
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 300 tcttctccaagctctgcagtcatgtcagatgcaatgaa 337
>gb|AV789714.1|AV789714 AV789714 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-84-K22 3',
mRNA sequence
Length = 408
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 329 tcttctccaagctctgcagtcatgtcagatgcaatgaa 366
>gb|AV790526.1|AV790526 AV790526 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-89-D07 3',
mRNA sequence
Length = 418
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 342 tcttctccaagctctgcagtcatgtcagatgcaatgaa 379
>gb|AV794147.1|AV794147 AV794147 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-11-K20 3',
mRNA sequence
Length = 442
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 329 tcttctccaagctctgcagtcatgtcagatgcaatgaa 366
>gb|AV799789.1|AV799789 AV799789 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-21-H15 3',
mRNA sequence
Length = 411
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 300 tcttctccaagctctgcagtcatgtcagatgcaatgaa 337
>gb|AV801820.1|AV801820 AV801820 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-29-L04 3',
mRNA sequence
Length = 388
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 346 tcttctccaagctctgcagtcatgtcagatgcaatgaa 383
>gb|AV809999.1|AV809999 AV809999 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-62-D05 3',
mRNA sequence
Length = 421
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 329 tcttctccaagctctgcagtcatgtcagatgcaatgaa 366
>gb|AV813984.1|AV813984 AV813984 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-81-D20 3',
mRNA sequence
Length = 402
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 329 tcttctccaagctctgcagtcatgtcagatgcaatgaa 366
>gb|AV439515.1|AV439515 AV439515 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APD03g04_f 3', mRNA
sequence
Length = 559
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 254 tcttctccaagctctgcagtcatgtcagatgcaatgaa 291
>gb|AV519501.1|AV519501 AV519501 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APD61a05F 3', mRNA
sequence
Length = 562
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 300 tcttctccaagctctgcagtcatgtcagatgcaatgaa 337
>gb|AV538060.1|AV538060 AV538060 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ109f08F 3', mRNA sequence
Length = 602
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 347 tcttctccaagctctgcagtcatgtcagatgcaatgaa 384
>gb|AV538816.1|AV538816 AV538816 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ121g01F 3', mRNA sequence
Length = 399
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 329 tcttctccaagctctgcagtcatgtcagatgcaatgaa 366
>gb|AV559576.1|AV559576 AV559576 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ119h03F 3', mRNA sequence
Length = 557
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 288 tcttctccaagctctgcagtcatgtcagatgcaatgaa 325
>gb|AV563492.1|AV563492 AV563492 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ188b06F 3', mRNA sequence
Length = 380
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 315 tcttctccaagctctgcagtcatgtcagatgcaatgaa 352
>gb|AV563847.1|AV563847 AV563847 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ194e10F 3', mRNA sequence
Length = 574
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 306 tcttctccaagctctgcagtcatgtcagatgcaatgaa 343
>gb|AV565925.1|AV565925 AV565925 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ233b08F 3', mRNA sequence
Length = 510
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 307 tcttctccaagctctgcagtcatgtcagatgcaatgaa 344
>gb|BP564068.1|BP564068 BP564068 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-05-O09 3',
mRNA sequence
Length = 428
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 338 tcttctccaagctctgcagtcatgtcagatgcaatgaa 375
>gb|BP584014.1|BP584014 BP584014 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-44-H10 3',
mRNA sequence
Length = 422
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 337 tcttctccaagctctgcagtcatgtcagatgcaatgaa 374
>gb|BP586370.1|BP586370 BP586370 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-06-B20 3',
mRNA sequence
Length = 441
Score = 52.0 bits (26), Expect = 2e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 352 tcttctccaagttcggcagtcatatcagatgcaatgaa 389
||||||||||| || |||||||| ||||||||||||||
Sbjct: 328 tcttctccaagctctgcagtcatgtcagatgcaatgaa 365
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 741,808
Number of Sequences: 1013581
Number of extensions: 741808
Number of successful extensions: 61133
Number of sequences better than 0.5: 79
Number of HSP's better than 0.5 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59724
Number of HSP's gapped (non-prelim): 1389
length of query: 1252
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1232
effective length of database: 888,669,252
effective search space: 1094840518464
effective search space used: 1094840518464
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)