BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3871923.2.1
(1030 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV559526.1|AV559526 AV559526 Arabidopsis thaliana green ... 98 4e-018
gb|AY080792.1| Arabidopsis thaliana putative ABC transporte... 98 4e-018
gb|AY150457.1| Arabidopsis thaliana putative ABC transporte... 98 4e-018
ref|NM_101647.3| Arabidopsis thaliana ATPase, coupled to tr... 98 4e-018
gb|Z18062.1|Z18062 ATTS0548 Versailles-VB Arabidopsis thali... 78 3e-012
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 72 2e-010
gb|AC034106.4|F2H15 Sequence of BAC F2H15 from Arabidopsis ... 72 2e-010
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 72 2e-010
gb|BE522890.1|BE522890 M30A1STM Arabidopsis developing seed... 66 1e-008
gb|AV556190.1|AV556190 AV556190 Arabidopsis thaliana green ... 64 5e-008
gb|AV559560.1|AV559560 AV559560 Arabidopsis thaliana green ... 64 5e-008
gb|AV562800.1|AV562800 AV562800 Arabidopsis thaliana green ... 64 5e-008
gb|BP644960.1|BP644960 BP644960 RAFL19 Arabidopsis thaliana... 64 5e-008
gb|BP653619.1|BP653619 BP653619 RAFL19 Arabidopsis thaliana... 64 5e-008
gb|AC025908.1|AC025908 Arabidopsis thaliana chromosome 1 cl... 64 5e-008
gb|AI999375.1|AI999375 701555633 A. thaliana, Columbia Col-... 62 2e-007
gb|BE525856.1|BE525856 M63D24STM Arabidopsis developing see... 62 2e-007
gb|AY093054.1| Arabidopsis thaliana unknown protein (At3g21... 62 2e-007
gb|BT000405.1| Arabidopsis thaliana unknown protein (At3g21... 62 2e-007
dbj|AP000604.1| Arabidopsis thaliana genomic DNA, chromosom... 62 2e-007
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 62 2e-007
ref|NM_113003.3| Arabidopsis thaliana ATPase, coupled to tr... 62 2e-007
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 62 2e-007
gb|BP647382.1|BP647382 BP647382 RAFL19 Arabidopsis thaliana... 60 8e-007
gb|BP630405.1|BP630405 BP630405 RAFL17 Arabidopsis thaliana... 56 1e-005
gb|AF412079.1|AF412079 Arabidopsis thaliana At1g51500/F5D21... 56 1e-005
gb|AY093162.1| Arabidopsis thaliana ATP-dependent transmemb... 56 1e-005
gb|BT008427.1| Arabidopsis thaliana At1g51560 gene, complet... 56 1e-005
gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BA... 56 1e-005
gb|AY734542.1| Arabidopsis thaliana ABC transporter CER5 ge... 56 1e-005
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 56 1e-005
ref|NM_104028.2| Arabidopsis thaliana CER5 (ECERIFERUM 5); ... 56 1e-005
gb|BP610010.1|BP610010 BP610010 RAFL16 Arabidopsis thaliana... 52 2e-004
gb|B74016.1|B74016 T27H20TR TAMU Arabidopsis thaliana genom... 46 0.012
dbj|AK118438.1| Arabidopsis thaliana At1g51460 mRNA for put... 46 0.012
emb|CQ805180.1| Sequence 1591 from Patent WO2004035798 46 0.012
ref|NM_104024.2| Arabidopsis thaliana ATPase, coupled to tr... 46 0.012
>gb|AV559526.1|AV559526 AV559526 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ119a05F 3', mRNA sequence
Length = 626
Score = 97.6 bits (49), Expect = 4e-018
Identities = 160/197 (81%)
Strand = Plus / Plus
Query: 428 gagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggtatcatcata 487
|||||||| |||||||| ||||| ||| | |||| || ||||||||||||||||||||
Sbjct: 370 gagagcttaatgatggcaattgctagtattgttcccaacttcctcatgggtatcatcatc 429
Query: 488 ggggccgggattcagggaatattcatgctggtctctggctacttcagacttccatacgac 547
|| || || || ||||| || ||||||||||| ||||| | |||||| |||||| | |||
Sbjct: 430 ggagctggaatccaggggatcttcatgctggtttctggattcttcaggcttccaaatgac 489
Query: 548 atcccgaagcccttttggagataccccatgcagtacatcagcttccactactgggcactg 607
||||| || || || ||| | ||||| ||| |||||||||||||||| |||||| ||
Sbjct: 490 atcccaaaacctttctggcgttacccaatgtcctacatcagcttccacttctgggctcta 549
Query: 608 cagggccagtgccagaa 624
|| || |||| ||||||
Sbjct: 550 caaggtcagtaccagaa 566
Score = 83.8 bits (42), Expect = 6e-014
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 164 ttcgtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaa 223
||||||||||| || || || |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 106 ttcgtctttggctttgtaacattcatgtcaattggtggatttccttcgttcgttgaagac 165
Query: 224 atgaaggtcttcca 237
||||||||||||||
Sbjct: 166 atgaaggtcttcca 179
>gb|AY080792.1| Arabidopsis thaliana putative ABC transporter protein (At1g17840)
mRNA, complete cds
Length = 2652
Score = 97.6 bits (49), Expect = 4e-018
Identities = 160/197 (81%)
Strand = Plus / Plus
Query: 428 gagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggtatcatcata 487
|||||||| |||||||| ||||| ||| | |||| || ||||||||||||||||||||
Sbjct: 1826 gagagcttaatgatggcaattgctagtattgttcccaacttcctcatgggtatcatcatc 1885
Query: 488 ggggccgggattcagggaatattcatgctggtctctggctacttcagacttccatacgac 547
|| || || || ||||| || ||||||||||| ||||| | |||||| |||||| | |||
Sbjct: 1886 ggagctggaatccaggggatcttcatgctggtttctggattcttcaggcttccaaatgac 1945
Query: 548 atcccgaagcccttttggagataccccatgcagtacatcagcttccactactgggcactg 607
||||| || || || ||| | ||||| ||| |||||||||||||||| |||||| ||
Sbjct: 1946 atcccaaaacctttctggcgttacccaatgtcctacatcagcttccacttctgggctcta 2005
Query: 608 cagggccagtgccagaa 624
|| || |||| ||||||
Sbjct: 2006 caaggtcagtaccagaa 2022
Score = 83.8 bits (42), Expect = 6e-014
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 164 ttcgtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaa 223
||||||||||| || || || |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 1562 ttcgtctttggctttgtaacattcatgtcaattggtggatttccttcgttcgttgaagac 1621
Query: 224 atgaaggtcttcca 237
||||||||||||||
Sbjct: 1622 atgaaggtcttcca 1635
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 755 agcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaacgagga 810
|||||||| |||||||||||||| |||||||| ||||||| |||| |||||||||
Sbjct: 2150 agcatgattatcatctaccgcatcatcttcttcatcatgattaagaccaacgagga 2205
>gb|AY150457.1| Arabidopsis thaliana putative ABC transporter protein (At1g17840)
mRNA, complete cds
Length = 2143
Score = 97.6 bits (49), Expect = 4e-018
Identities = 160/197 (81%)
Strand = Plus / Plus
Query: 428 gagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggtatcatcata 487
|||||||| |||||||| ||||| ||| | |||| || ||||||||||||||||||||
Sbjct: 1579 gagagcttaatgatggcaattgctagtattgttcccaacttcctcatgggtatcatcatc 1638
Query: 488 ggggccgggattcagggaatattcatgctggtctctggctacttcagacttccatacgac 547
|| || || || ||||| || ||||||||||| ||||| | |||||| |||||| | |||
Sbjct: 1639 ggagctggaatccaggggatcttcatgctggtttctggattcttcaggcttccaaatgac 1698
Query: 548 atcccgaagcccttttggagataccccatgcagtacatcagcttccactactgggcactg 607
||||| || || || ||| | ||||| ||| |||||||||||||||| |||||| ||
Sbjct: 1699 atcccaaaacctttctggcgttacccaatgtcctacatcagcttccacttctgggctcta 1758
Query: 608 cagggccagtgccagaa 624
|| || |||| ||||||
Sbjct: 1759 caaggtcagtaccagaa 1775
Score = 83.8 bits (42), Expect = 6e-014
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 164 ttcgtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaa 223
||||||||||| || || || |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 1315 ttcgtctttggctttgtaacattcatgtcaattggtggatttccttcgttcgttgaagac 1374
Query: 224 atgaaggtcttcca 237
||||||||||||||
Sbjct: 1375 atgaaggtcttcca 1388
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 755 agcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaacgagga 810
|||||||| |||||||||||||| |||||||| ||||||| |||| |||||||||
Sbjct: 1903 agcatgattatcatctaccgcatcatcttcttcatcatgattaagaccaacgagga 1958
>ref|NM_101647.3| Arabidopsis thaliana ATPase, coupled to transmembrane movement of
substances AT1G17840 mRNA, complete cds
Length = 2999
Score = 97.6 bits (49), Expect = 4e-018
Identities = 160/197 (81%)
Strand = Plus / Plus
Query: 428 gagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggtatcatcata 487
|||||||| |||||||| ||||| ||| | |||| || ||||||||||||||||||||
Sbjct: 1839 gagagcttaatgatggcaattgctagtattgttcccaacttcctcatgggtatcatcatc 1898
Query: 488 ggggccgggattcagggaatattcatgctggtctctggctacttcagacttccatacgac 547
|| || || || ||||| || ||||||||||| ||||| | |||||| |||||| | |||
Sbjct: 1899 ggagctggaatccaggggatcttcatgctggtttctggattcttcaggcttccaaatgac 1958
Query: 548 atcccgaagcccttttggagataccccatgcagtacatcagcttccactactgggcactg 607
||||| || || || ||| | ||||| ||| |||||||||||||||| |||||| ||
Sbjct: 1959 atcccaaaacctttctggcgttacccaatgtcctacatcagcttccacttctgggctcta 2018
Query: 608 cagggccagtgccagaa 624
|| || |||| ||||||
Sbjct: 2019 caaggtcagtaccagaa 2035
Score = 83.8 bits (42), Expect = 6e-014
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 164 ttcgtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaa 223
||||||||||| || || || |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 1575 ttcgtctttggctttgtaacattcatgtcaattggtggatttccttcgttcgttgaagac 1634
Query: 224 atgaaggtcttcca 237
||||||||||||||
Sbjct: 1635 atgaaggtcttcca 1648
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 755 agcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaacgagga 810
|||||||| |||||||||||||| |||||||| ||||||| |||| |||||||||
Sbjct: 2163 agcatgattatcatctaccgcatcatcttcttcatcatgattaagaccaacgagga 2218
>gb|Z18062.1|Z18062 ATTS0548 Versailles-VB Arabidopsis thaliana cDNA clone VBV04-20592,
mRNA sequence
Length = 253
Score = 77.8 bits (39), Expect = 3e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 164 ttcgtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaa 223
|||| |||||| || || || |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 32 ttcgnctttggctttgtaacattcatgtcaattggtggatttccttcgttcgttgaagac 91
Query: 224 atgaaggtcttcca 237
||||||||||||||
Sbjct: 92 atgaaggtcttcca 105
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 71.9 bits (36), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 164 ttcgtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaa 223
||||||||||| || || || |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 6144646 ttcgtctttggctttgtaacattcatgtcaattggtggatttccttcgttcgttgaagac 6144705
Query: 224 atgaaggt 231
||||||||
Sbjct: 6144706 atgaaggt 6144713
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 755 agcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaacgagga 810
|||||||| |||||||||||||| |||||||| ||||||| |||| |||||||||
Sbjct: 6145502 agcatgattatcatctaccgcatcatcttcttcatcatgattaagaccaacgagga 6145557
Score = 60.0 bits (30), Expect = 8e-007
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 498 ttcagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagc 557
||||||| || ||||||||||| ||||| | |||||| |||||| | |||||||| || |
Sbjct: 6145149 ttcaggggatcttcatgctggtttctggattcttcaggcttccaaatgacatcccaaaac 6145208
Query: 558 ccttttggagataccccatgcagtacatcagcttccactactgggc 603
| || ||| | ||||| ||| |||||||||||||||| ||||||
Sbjct: 6145209 ctttctggcgttacccaatgtcctacatcagcttccacttctgggc 6145254
Score = 54.0 bits (27), Expect = 5e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 428 gagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggtatcatcat 486
|||||||| |||||||| ||||| ||| | |||| || ||||||||||||||||||||
Sbjct: 6144991 gagagcttaatgatggcaattgctagtattgttcccaacttcctcatgggtatcatcat 6145049
>gb|AC034106.4|F2H15 Sequence of BAC F2H15 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 75133
Score = 71.9 bits (36), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 164 ttcgtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaa 223
||||||||||| || || || |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 25840 ttcgtctttggctttgtaacattcatgtcaattggtggatttccttcgttcgttgaagac 25899
Query: 224 atgaaggt 231
||||||||
Sbjct: 25900 atgaaggt 25907
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 755 agcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaacgagga 810
|||||||| |||||||||||||| |||||||| ||||||| |||| |||||||||
Sbjct: 26696 agcatgattatcatctaccgcatcatcttcttcatcatgattaagaccaacgagga 26751
Score = 60.0 bits (30), Expect = 8e-007
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 498 ttcagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagc 557
||||||| || ||||||||||| ||||| | |||||| |||||| | |||||||| || |
Sbjct: 26343 ttcaggggatcttcatgctggtttctggattcttcaggcttccaaatgacatcccaaaac 26402
Query: 558 ccttttggagataccccatgcagtacatcagcttccactactgggc 603
| || ||| | ||||| ||| |||||||||||||||| ||||||
Sbjct: 26403 ctttctggcgttacccaatgtcctacatcagcttccacttctgggc 26448
Score = 54.0 bits (27), Expect = 5e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 428 gagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggtatcatcat 486
|||||||| |||||||| ||||| ||| | |||| || ||||||||||||||||||||
Sbjct: 26185 gagagcttaatgatggcaattgctagtattgttcccaacttcctcatgggtatcatcat 26243
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 71.9 bits (36), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 164 ttcgtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgttgaagaa 223
||||||||||| || || || |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 6144822 ttcgtctttggctttgtaacattcatgtcaattggtggatttccttcgttcgttgaagac 6144881
Query: 224 atgaaggt 231
||||||||
Sbjct: 6144882 atgaaggt 6144889
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 755 agcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaacgagga 810
|||||||| |||||||||||||| |||||||| ||||||| |||| |||||||||
Sbjct: 6145678 agcatgattatcatctaccgcatcatcttcttcatcatgattaagaccaacgagga 6145733
Score = 60.0 bits (30), Expect = 8e-007
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 498 ttcagggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagc 557
||||||| || ||||||||||| ||||| | |||||| |||||| | |||||||| || |
Sbjct: 6145325 ttcaggggatcttcatgctggtttctggattcttcaggcttccaaatgacatcccaaaac 6145384
Query: 558 ccttttggagataccccatgcagtacatcagcttccactactgggc 603
| || ||| | ||||| ||| |||||||||||||||| ||||||
Sbjct: 6145385 ctttctggcgttacccaatgtcctacatcagcttccacttctgggc 6145430
Score = 56.0 bits (28), Expect = 1e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaa 228
||||||||||||||||| || ||||| ||| |||||||||||||
Sbjct: 19102790 ttcatgtccattggagggtttccttctttcattgaagaaatgaa 19102747
Score = 54.0 bits (27), Expect = 5e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 428 gagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggtatcatcat 486
|||||||| |||||||| ||||| ||| | |||| || ||||||||||||||||||||
Sbjct: 6145167 gagagcttaatgatggcaattgctagtattgttcccaacttcctcatgggtatcatcat 6145225
Score = 46.1 bits (23), Expect = 0.012
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggt 231
|||||||| || |||||||||| || ||| ||||||||||||||||
Sbjct: 19081840 ttcatgtcaataggaggattccaatccttcattgaagaaatgaaggt 19081794
>gb|BE522890.1|BE522890 M30A1STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M30A1 5', mRNA sequence
Length = 365
Score = 65.9 bits (33), Expect = 1e-008
Identities = 111/137 (81%)
Strand = Plus / Plus
Query: 467 ttcctcatgggtatcatcataggggccgggattcagggaatattcatgctggtctctggc 526
|||||||||||||||||||| | || || || || || || ||||||||||| |||||
Sbjct: 17 ttcctcatgggtatcatcatctgagctggaatccacgggatcttcatgctggtttctgga 76
Query: 527 tacttcagacttccatacgacatcccgaagcccttttggagataccccatgcagtacatc 586
| |||||| |||||| | |||||||| || || || ||| | ||||| ||| ||||||
Sbjct: 77 ttcttcaggcttccaaatgacatcccaaaacctttctggcgttacccaatgtcctacatc 136
Query: 587 agcttccactactgggc 603
|||||||||| ||||||
Sbjct: 137 agcttccacttctgggc 153
Score = 56.0 bits (28), Expect = 1e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 755 agcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaacgagga 810
|||||||| |||||||||||||| |||||||| ||||||| |||| | |||||||
Sbjct: 302 agcatgattatcatctaccgcatcatcttcttcatcatgattaagaaccacgagga 357
>gb|AV556190.1|AV556190 AV556190 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ036f08F 3', mRNA sequence
Length = 544
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 755 agcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaacgagga 810
|||||||| |||||||||||||| |||||||| ||||||| |||| |||||||||
Sbjct: 401 agcatgattatcatctaccgcatcatcttcttcatcatgattaagaccaacgagga 346
>gb|AV559560.1|AV559560 AV559560 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ119e12F 3', mRNA sequence
Length = 603
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 755 agcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaacgagga 810
|||||||| |||||||||||||| |||||||| ||||||| |||| |||||||||
Sbjct: 399 agcatgattatcatctaccgcatcatcttcttcatcatgattaagaccaacgagga 344
>gb|AV562800.1|AV562800 AV562800 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ176c09F 3', mRNA sequence
Length = 379
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 755 agcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaacgagga 810
|||||||| |||||||||||||| |||||||| ||||||| |||| |||||||||
Sbjct: 366 agcatgattatcatctaccgcatcatcttcttcatcatgattaagaccaacgagga 311
>gb|BP644960.1|BP644960 BP644960 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-67-D03 3',
mRNA sequence
Length = 406
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 755 agcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaacgagga 810
|||||||| |||||||||||||| |||||||| ||||||| |||| |||||||||
Sbjct: 398 agcatgattatcatctaccgcatcatcttcttcatcatgattaagaccaacgagga 343
>gb|BP653619.1|BP653619 BP653619 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-14-K14 3',
mRNA sequence
Length = 406
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 755 agcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaacgagga 810
|||||||| |||||||||||||| |||||||| ||||||| |||| |||||||||
Sbjct: 379 agcatgattatcatctaccgcatcatcttcttcatcatgattaagaccaacgagga 324
>gb|AC025908.1|AC025908 Arabidopsis thaliana chromosome 1 clone F20L2, *** SEQUENCING IN
PROGRESS ***, 13 unordered pieces
Length = 65262
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 755 agcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaacgagga 810
|||||||| |||||||||||||| |||||||| ||||||| |||| |||||||||
Sbjct: 26434 agcatgattatcatctaccgcatcatcttcttcatcatgattaagaccaacgagga 26489
>gb|AI999375.1|AI999375 701555633 A. thaliana, Columbia Col-0, rosette-3 Arabidopsis
thaliana cDNA clone 701555633, mRNA sequence
Length = 548
Score = 61.9 bits (31), Expect = 2e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 756 gcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaacgagga 810
||||||| |||||||||||||| |||||||| ||||||| |||| |||||||||
Sbjct: 402 gcatgattatcatctaccgcatcatcttcttcatcatgattaagaccaacgagga 348
>gb|BE525856.1|BE525856 M63D24STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600034390R1 5', mRNA sequence
Length = 231
Score = 61.9 bits (31), Expect = 2e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggt 231
||||||||||||||||| |||||||| ||| | ||||||||||||||
Sbjct: 48 ttcatgtccattggaggcttcccttctttcctcgaagaaatgaaggt 94
>gb|AY093054.1| Arabidopsis thaliana unknown protein (At3g21090) mRNA, complete cds
Length = 2240
Score = 61.9 bits (31), Expect = 2e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggt 231
||||||||||||||||| |||||||| ||| | ||||||||||||||
Sbjct: 1376 ttcatgtccattggaggcttcccttctttcctcgaagaaatgaaggt 1422
>gb|BT000405.1| Arabidopsis thaliana unknown protein (At3g21090) mRNA, complete cds
Length = 2114
Score = 61.9 bits (31), Expect = 2e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggt 231
||||||||||||||||| |||||||| ||| | ||||||||||||||
Sbjct: 1270 ttcatgtccattggaggcttcccttctttcctcgaagaaatgaaggt 1316
>dbj|AP000604.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSA6
Length = 63748
Score = 61.9 bits (31), Expect = 2e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggt 231
||||||||||||||||| |||||||| ||| | ||||||||||||||
Sbjct: 38102 ttcatgtccattggaggcttcccttctttcctcgaagaaatgaaggt 38056
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 61.9 bits (31), Expect = 2e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggt 231
||||||||||||||||| |||||||| ||| | ||||||||||||||
Sbjct: 7345654 ttcatgtccattggaggcttcccttctttcctcgaagaaatgaaggt 7345608
>ref|NM_113003.3| Arabidopsis thaliana ATPase, coupled to transmembrane movement of
substances AT3G21090 mRNA, complete cds
Length = 2241
Score = 61.9 bits (31), Expect = 2e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggt 231
||||||||||||||||| |||||||| ||| | ||||||||||||||
Sbjct: 1376 ttcatgtccattggaggcttcccttctttcctcgaagaaatgaaggt 1422
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 61.9 bits (31), Expect = 2e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggt 231
||||||||||||||||| |||||||| ||| | ||||||||||||||
Sbjct: 7392552 ttcatgtccattggaggcttcccttctttcctcgaagaaatgaaggt 7392506
>gb|BP647382.1|BP647382 BP647382 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-75-E24 3',
mRNA sequence
Length = 387
Score = 60.0 bits (30), Expect = 8e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 765 tcatctaccgcatcctcttcttcctcatgatcaagatcaacgagga 810
|||||||||||||| |||||||| ||||||| |||| |||||||||
Sbjct: 387 tcatctaccgcatcatcttcttcatcatgattaagaccaacgagga 342
>gb|BP630405.1|BP630405 BP630405 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-20-A18 3',
mRNA sequence
Length = 420
Score = 56.0 bits (28), Expect = 1e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 767 atctaccgcatcctcttcttcctcatgatcaagatcaacgagga 810
|||||||||||| |||||||| ||||||| |||| |||||||||
Sbjct: 420 atctaccgcatcatcttcttcatcatgattaagaccaacgagga 377
>gb|AF412079.1|AF412079 Arabidopsis thaliana At1g51500/F5D21_6 mRNA, complete cds
Length = 2308
Score = 56.0 bits (28), Expect = 1e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaa 228
||||||||||||||||| || ||||| ||| |||||||||||||
Sbjct: 1368 ttcatgtccattggagggtttccttctttcattgaagaaatgaa 1411
>gb|AY093162.1| Arabidopsis thaliana ATP-dependent transmembrane transporter,
putative (At1g51500) mRNA, complete cds
Length = 2263
Score = 56.0 bits (28), Expect = 1e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaa 228
||||||||||||||||| || ||||| ||| |||||||||||||
Sbjct: 1358 ttcatgtccattggagggtttccttctttcattgaagaaatgaa 1401
>gb|BT008427.1| Arabidopsis thaliana At1g51560 gene, complete cds
Length = 2064
Score = 56.0 bits (28), Expect = 1e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaa 228
||||||||||||||||| || ||||| ||| |||||||||||||
Sbjct: 1273 ttcatgtccattggagggtttccttctttcattgaagaaatgaa 1316
>gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D21 genomic sequence, complete
sequence
Length = 92652
Score = 56.0 bits (28), Expect = 1e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaa 228
||||||||||||||||| || ||||| ||| |||||||||||||
Sbjct: 41625 ttcatgtccattggagggtttccttctttcattgaagaaatgaa 41668
Score = 46.1 bits (23), Expect = 0.012
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggt 231
|||||||| || |||||||||| || ||| ||||||||||||||||
Sbjct: 62575 ttcatgtcaataggaggattccaatccttcattgaagaaatgaaggt 62621
>gb|AY734542.1| Arabidopsis thaliana ABC transporter CER5 gene, complete cds
Length = 3396
Score = 56.0 bits (28), Expect = 1e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaa 228
||||||||||||||||| || ||||| ||| |||||||||||||
Sbjct: 1905 ttcatgtccattggagggtttccttctttcattgaagaaatgaa 1948
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 56.0 bits (28), Expect = 1e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaa 228
||||||||||||||||| || ||||| ||| |||||||||||||
Sbjct: 3458385 ttcatgtccattggagggtttccttctttcattgaagaaatgaa 3458342
Score = 46.1 bits (23), Expect = 0.012
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggt 231
|||||||| || |||||||||| || ||| ||||||||||||||||
Sbjct: 3437435 ttcatgtcaataggaggattccaatccttcattgaagaaatgaaggt 3437389
>ref|NM_104028.2| Arabidopsis thaliana CER5 (ECERIFERUM 5); ATPase, coupled to
transmembrane movement of substances AT1G51500 (CER5)
mRNA, complete cds
Length = 2329
Score = 56.0 bits (28), Expect = 1e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaa 228
||||||||||||||||| || ||||| ||| |||||||||||||
Sbjct: 1368 ttcatgtccattggagggtttccttctttcattgaagaaatgaa 1411
>gb|BP610010.1|BP610010 BP610010 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-09-J10 3',
mRNA sequence
Length = 419
Score = 52.0 bits (26), Expect = 2e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 755 agcatgatcttcatctaccgcatcctcttcttcctcatgatcaaga 800
|||||||| |||||||||||||| |||||||| ||||||| ||||
Sbjct: 397 agcatgattatcatctaccgcatcatcttcttcatcatgattaaga 352
>gb|B74016.1|B74016 T27H20TR TAMU Arabidopsis thaliana genomic clone T27H20, DNA
sequence
Length = 615
Score = 46.1 bits (23), Expect = 0.012
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggt 231
|||||||| || |||||||||| || ||| ||||||||||||||||
Sbjct: 523 ttcatgtcaataggaggattccaatccttcattgaagaaatgaaggt 569
>dbj|AK118438.1| Arabidopsis thaliana At1g51460 mRNA for putative ATP-dependent
transmembrane transporter, complete cds, clone:
RAFL19-68-K01
Length = 2285
Score = 46.1 bits (23), Expect = 0.012
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggt 231
|||||||| || |||||||||| || ||| ||||||||||||||||
Sbjct: 1353 ttcatgtcaataggaggattccaatccttcattgaagaaatgaaggt 1399
>emb|CQ805180.1| Sequence 1591 from Patent WO2004035798
Length = 2037
Score = 46.1 bits (23), Expect = 0.012
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggt 231
|||||||| || |||||||||| || ||| ||||||||||||||||
Sbjct: 1255 ttcatgtcaataggaggattccaatccttcattgaagaaatgaaggt 1301
>ref|NM_104024.2| Arabidopsis thaliana ATPase, coupled to transmembrane movement of
substances AT1G51460 mRNA, complete cds
Length = 2285
Score = 46.1 bits (23), Expect = 0.012
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggt 231
|||||||| || |||||||||| || ||| ||||||||||||||||
Sbjct: 1353 ttcatgtcaataggaggattccaatccttcattgaagaaatgaaggt 1399
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 431,431
Number of Sequences: 1013581
Number of extensions: 431431
Number of successful extensions: 36884
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35708
Number of HSP's gapped (non-prelim): 1167
length of query: 1030
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1010
effective length of database: 888,669,252
effective search space: 897555944520
effective search space used: 897555944520
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)