BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829483.2.1
(1069 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP847856.1|BP847856 BP847856 RAFL21 Arabidopsis thaliana... 48 0.003
>gb|BP847856.1|BP847856 BP847856 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-03-F23 5',
mRNA sequence
Length = 405
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
|||||| ||||| || ||| | || |||||||| |||||||| || ||||| ||||||||
Sbjct: 192 caagagtgagcttcttctcaaatcaaacccggttcacaagaaagtccccgtcctcctcca 251
Query: 214 caac 217
||||
Sbjct: 252 caac 255
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 426,462
Number of Sequences: 1013581
Number of extensions: 426462
Number of successful extensions: 37641
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37640
Number of HSP's gapped (non-prelim): 1
length of query: 1069
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1049
effective length of database: 888,669,252
effective search space: 932214045348
effective search space used: 932214045348
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)