BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748501.2.2
(993 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 50 7e-004
gb|AY059790.1| Arabidopsis thaliana At1g01770 mRNA sequence 50 7e-004
gb|AC009273.2|T1N6 Sequence of BAC T1N6 from Arabidopsis th... 50 7e-004
ref|NM_100061.2| Arabidopsis thaliana zinc ion binding AT1G... 50 7e-004
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 50 7e-004
gb|AQ967471.1|AQ967471 LERIS17TF LERG Arabidopsis thaliana ... 46 0.012
gb|T42207.1|T42207 5470 Lambda-PRL2 Arabidopsis thaliana cD... 46 0.012
gb|CB263312.1|CB263312 26-E8880-008-014-D07-pBl2 MPIZ-ADIS-... 46 0.012
gb|CB263957.1|CB263957 02-E011587-008-014-D07-pBl2 MPIZ-ADI... 46 0.012
gb|CB263958.1|CB263958 02-E011587-008-014-D07-rev MPIZ-ADIS... 46 0.012
gb|BP594775.1|BP594775 BP594775 RAFL15 Arabidopsis thaliana... 46 0.012
gb|BP619414.1|BP619414 BP619414 RAFL16 Arabidopsis thaliana... 46 0.012
gb|CB254062.1|CB254062 81-E010933-019-003-B21-T7R MPIZ-ADIS... 46 0.012
emb|X74319.1|ATLIM1 A.thaliana atl1 gene 46 0.012
gb|AF370569.1|AF370569 Arabidopsis thaliana similar to tran... 46 0.012
emb|AX412728.1| Sequence 492 from Patent WO0222675 46 0.012
gb|AY072143.1| Arabidopsis thaliana At1g10200 mRNA sequence 46 0.012
gb|AY085377.1| Arabidopsis thaliana clone 148790 mRNA, comp... 46 0.012
gb|AC005489.1|AC005489 Genomic sequence for Arabidopsis tha... 46 0.012
emb|BX825681.1|CNS0A6AT Arabidopsis thaliana Full-length cD... 46 0.012
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 46 0.012
emb|AL137898.1|ATT20K12 Arabidopsis thaliana DNA chromosome... 46 0.012
gb|BT022103.1| Arabidopsis thaliana At3g61230 mRNA, complet... 46 0.012
ref|NM_100894.2| Arabidopsis thaliana transcription factor/... 46 0.012
ref|NM_115987.2| Arabidopsis thaliana zinc ion binding AT3G... 46 0.012
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 46 0.012
gb|BE038353.1|BE038353 AA12D10 AA Arabidopsis thaliana cDNA... 44 0.046
gb|BX841501.1|BX841501 BX841501 Arabidopsis thaliana Flower... 44 0.046
gb|BP624866.1|BP624866 BP624866 RAFL17 Arabidopsis thaliana... 44 0.046
gb|BP665739.1|BP665739 BP665739 RAFL21 Arabidopsis thaliana... 44 0.046
gb|BP668690.1|BP668690 BP668690 RAFL21 Arabidopsis thaliana... 44 0.046
gb|BP790629.1|BP790629 BP790629 RAFL7 Arabidopsis thaliana ... 44 0.046
emb|CR379094.1| Arabidopsis thaliana transposon insertion S... 44 0.046
gb|AA042167.1|AA042167 24488 CD4-13 Arabidopsis thaliana cD... 42 0.18
gb|AA042777.1|AA042777 25033 CD4-13 Arabidopsis thaliana cD... 42 0.18
gb|AV789436.1|AV789436 AV789436 RAFL6 Arabidopsis thaliana ... 42 0.18
gb|AV814356.1|AV814356 AV814356 RAFL9 Arabidopsis thaliana ... 42 0.18
gb|BU636113.1|BU636113 045F10 Infected Arabidopsis Leaf Ara... 42 0.18
gb|CB260281.1|CB260281 83-E011176-013-009-E21-T7R MPIZ-ADIS... 42 0.18
gb|AV539402.1|AV539402 AV539402 Arabidopsis thaliana roots ... 42 0.18
gb|AV543368.1|AV543368 AV543368 Arabidopsis thaliana roots ... 42 0.18
gb|AV567179.1|AV567179 AV567179 Arabidopsis thaliana green ... 42 0.18
gb|CK120429.1|CK120429 218l07.p1 AtM1 Arabidopsis thaliana ... 42 0.18
gb|BP564751.1|BP564751 BP564751 RAFL14 Arabidopsis thaliana... 42 0.18
gb|BP565750.1|BP565750 BP565750 RAFL14 Arabidopsis thaliana... 42 0.18
gb|BP565761.1|BP565761 BP565761 RAFL14 Arabidopsis thaliana... 42 0.18
gb|BP566679.1|BP566679 BP566679 RAFL14 Arabidopsis thaliana... 42 0.18
gb|BP568267.1|BP568267 BP568267 RAFL14 Arabidopsis thaliana... 42 0.18
gb|BP570549.1|BP570549 BP570549 RAFL14 Arabidopsis thaliana... 42 0.18
gb|BP572103.1|BP572103 BP572103 RAFL14 Arabidopsis thaliana... 42 0.18
gb|BP572833.1|BP572833 BP572833 RAFL14 Arabidopsis thaliana... 42 0.18
gb|BP573010.1|BP573010 BP573010 RAFL14 Arabidopsis thaliana... 42 0.18
gb|BP577901.1|BP577901 BP577901 RAFL14 Arabidopsis thaliana... 42 0.18
gb|BP579643.1|BP579643 BP579643 RAFL14 Arabidopsis thaliana... 42 0.18
gb|BP580186.1|BP580186 BP580186 RAFL14 Arabidopsis thaliana... 42 0.18
gb|BP582469.1|BP582469 BP582469 RAFL14 Arabidopsis thaliana... 42 0.18
gb|BP586416.1|BP586416 BP586416 RAFL15 Arabidopsis thaliana... 42 0.18
gb|BP587531.1|BP587531 BP587531 RAFL15 Arabidopsis thaliana... 42 0.18
gb|BP598301.1|BP598301 BP598301 RAFL16 Arabidopsis thaliana... 42 0.18
gb|BP599366.1|BP599366 BP599366 RAFL16 Arabidopsis thaliana... 42 0.18
gb|BP603435.1|BP603435 BP603435 RAFL16 Arabidopsis thaliana... 42 0.18
gb|BP609105.1|BP609105 BP609105 RAFL16 Arabidopsis thaliana... 42 0.18
gb|BP609287.1|BP609287 BP609287 RAFL16 Arabidopsis thaliana... 42 0.18
gb|BP609836.1|BP609836 BP609836 RAFL16 Arabidopsis thaliana... 42 0.18
gb|BP611094.1|BP611094 BP611094 RAFL16 Arabidopsis thaliana... 42 0.18
gb|BP614462.1|BP614462 BP614462 RAFL16 Arabidopsis thaliana... 42 0.18
gb|BP614837.1|BP614837 BP614837 RAFL16 Arabidopsis thaliana... 42 0.18
gb|BP615027.1|BP615027 BP615027 RAFL16 Arabidopsis thaliana... 42 0.18
gb|BP616759.1|BP616759 BP616759 RAFL16 Arabidopsis thaliana... 42 0.18
gb|BP618952.1|BP618952 BP618952 RAFL16 Arabidopsis thaliana... 42 0.18
gb|BP620957.1|BP620957 BP620957 RAFL16 Arabidopsis thaliana... 42 0.18
gb|BP627488.1|BP627488 BP627488 RAFL17 Arabidopsis thaliana... 42 0.18
gb|BP627677.1|BP627677 BP627677 RAFL17 Arabidopsis thaliana... 42 0.18
gb|BP629093.1|BP629093 BP629093 RAFL17 Arabidopsis thaliana... 42 0.18
gb|BP633854.1|BP633854 BP633854 RAFL17 Arabidopsis thaliana... 42 0.18
gb|BP635262.1|BP635262 BP635262 RAFL17 Arabidopsis thaliana... 42 0.18
gb|BP649953.1|BP649953 BP649953 RAFL19 Arabidopsis thaliana... 42 0.18
gb|BP650908.1|BP650908 BP650908 RAFL19 Arabidopsis thaliana... 42 0.18
gb|BP655708.1|BP655708 BP655708 RAFL19 Arabidopsis thaliana... 42 0.18
gb|BP657179.1|BP657179 BP657179 RAFL19 Arabidopsis thaliana... 42 0.18
gb|BP657284.1|BP657284 BP657284 RAFL19 Arabidopsis thaliana... 42 0.18
gb|BP663646.1|BP663646 BP663646 RAFL21 Arabidopsis thaliana... 42 0.18
gb|BP664521.1|BP664521 BP664521 RAFL21 Arabidopsis thaliana... 42 0.18
gb|BP666079.1|BP666079 BP666079 RAFL21 Arabidopsis thaliana... 42 0.18
gb|BP666682.1|BP666682 BP666682 RAFL21 Arabidopsis thaliana... 42 0.18
gb|BP835619.1|BP835619 BP835619 RAFL19 Arabidopsis thaliana... 42 0.18
gb|BP851492.1|BP851492 BP851492 RAFL21 Arabidopsis thaliana... 42 0.18
gb|AF370574.1|AF370574 Arabidopsis thaliana transcription f... 42 0.18
gb|AY063924.1| Arabidopsis thaliana putative transcription ... 42 0.18
gb|AY091249.1| Arabidopsis thaliana putative transcription ... 42 0.18
gb|AY084361.1| Arabidopsis thaliana clone 105441 mRNA, comp... 42 0.18
emb|BX824310.1|CNS0A5HL Arabidopsis thaliana Full-length cD... 42 0.18
emb|BX822878.1|CNS0A5VL Arabidopsis thaliana Full-length cD... 42 0.18
emb|BX817691.1|CNS0AE7D Arabidopsis thaliana Full-length cD... 42 0.18
emb|BX817923.1|CNS0AE65 Arabidopsis thaliana Full-length cD... 42 0.18
emb|CR383925.1| Arabidopsis thaliana transposon insertion S... 42 0.18
emb|AL161667.1|ATF1I16 Arabidopsis thaliana DNA chromosome ... 42 0.18
ref|NM_115435.3| Arabidopsis thaliana zinc ion binding AT3G... 42 0.18
ref|NM_001035791.1| Arabidopsis thaliana zinc ion binding A... 42 0.18
ref|NM_001035792.1| Arabidopsis thaliana zinc ion binding A... 42 0.18
ref|NM_001035793.1| Arabidopsis thaliana zinc ion binding A... 42 0.18
ref|NM_148878.2| Arabidopsis thaliana zinc ion binding AT3G... 42 0.18
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 50.1 bits (25), Expect = 7e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 218 tccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaagga 270
||||||||||| || ||||||||||||| || || ||||| |||||||||||
Sbjct: 283147 tccatggacggagttttgtactgcaagactcattttgagcaactcttcaagga 283199
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 443 taccacaagagctgcttcaagtg 465
|||||||||||||||||||||||
Sbjct: 3346684 taccacaagagctgcttcaagtg 3346662
>gb|AY059790.1| Arabidopsis thaliana At1g01770 mRNA sequence
Length = 3229
Score = 50.1 bits (25), Expect = 7e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 218 tccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaagga 270
||||||||||| || ||||||||||||| || || ||||| |||||||||||
Sbjct: 2603 tccatggacggagttttgtactgcaagactcattttgagcaactcttcaagga 2655
>gb|AC009273.2|T1N6 Sequence of BAC T1N6 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 76175
Score = 50.1 bits (25), Expect = 7e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 218 tccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaagga 270
||||||||||| || ||||||||||||| || || ||||| |||||||||||
Sbjct: 54323 tccatggacggagttttgtactgcaagactcattttgagcaactcttcaagga 54375
>ref|NM_100061.2| Arabidopsis thaliana zinc ion binding AT1G01780 mRNA, complete cds
Length = 765
Score = 50.1 bits (25), Expect = 7e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 218 tccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaagga 270
||||||||||| || ||||||||||||| || || ||||| |||||||||||
Sbjct: 298 tccatggacggagttttgtactgcaagactcattttgagcaactcttcaagga 350
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 50.1 bits (25), Expect = 7e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 218 tccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaagga 270
||||||||||| || ||||||||||||| || || ||||| |||||||||||
Sbjct: 283147 tccatggacggagttttgtactgcaagactcattttgagcaactcttcaagga 283199
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 443 taccacaagagctgcttcaagtg 465
|||||||||||||||||||||||
Sbjct: 3346864 taccacaagagctgcttcaagtg 3346842
>gb|AQ967471.1|AQ967471 LERIS17TF LERG Arabidopsis thaliana genomic clone LERIS17, DNA
sequence
Length = 639
Score = 46.1 bits (23), Expect = 0.012
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 383 tgtgcagcttgccagaaaacagtgtacccgctggagaagttgactctggaaggcgagtcc 442
||||||||||| |||||||||| || || || |||||| |||| ||||||| || ||
Sbjct: 372 tgtgcagcttgtaagaaaacagtttatcctctagagaagatgacaatggaaggagaatct 431
Query: 443 taccacaagagctgcttca 461
|||||||||| |||||||
Sbjct: 432 taccacaagacttgcttca 450
>gb|T42207.1|T42207 5470 Lambda-PRL2 Arabidopsis thaliana cDNA clone 111C13T7, mRNA
sequence
Length = 414
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaagtg 465
|||||||||||||||||||||||
Sbjct: 297 taccacaagagctgcttcaagtg 319
>gb|CB263312.1|CB263312 26-E8880-008-014-D07-pBl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767D0714Q 5-PRIME, mRNA sequence
Length = 554
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaagtg 465
|||||||||||||||||||||||
Sbjct: 416 taccacaagagctgcttcaagtg 438
>gb|CB263957.1|CB263957 02-E011587-008-014-D07-pBl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767D0714Q 5-PRIME, mRNA sequence
Length = 592
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaagtg 465
|||||||||||||||||||||||
Sbjct: 416 taccacaagagctgcttcaagtg 438
>gb|CB263958.1|CB263958 02-E011587-008-014-D07-rev MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767D0714Q 5-PRIME, mRNA sequence
Length = 592
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaagtg 465
|||||||||||||||||||||||
Sbjct: 416 taccacaagagctgcttcaagtg 438
>gb|BP594775.1|BP594775 BP594775 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-27-D06 3',
mRNA sequence
Length = 461
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 443 taccacaagagctgcttcaagtg 465
|||||||||||||||||||||||
Sbjct: 407 taccacaagagctgcttcaagtg 385
>gb|BP619414.1|BP619414 BP619414 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-33-D05 3',
mRNA sequence
Length = 450
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 443 taccacaagagctgcttcaagtg 465
|||||||||||||||||||||||
Sbjct: 407 taccacaagagctgcttcaagtg 385
>gb|CB254062.1|CB254062 81-E010933-019-003-B21-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768B213Q 5-PRIME, mRNA sequence
Length = 504
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaagtg 465
|||||||||||||||||||||||
Sbjct: 441 taccacaagagctgcttcaagtg 463
>emb|X74319.1|ATLIM1 A.thaliana atl1 gene
Length = 1140
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaagtg 465
|||||||||||||||||||||||
Sbjct: 926 taccacaagagctgcttcaagtg 948
>gb|AF370569.1|AF370569 Arabidopsis thaliana similar to transcription factor SF3
(pir|IS37656) (F14N23.8) mRNA, complete cds
Length = 610
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaagtg 465
|||||||||||||||||||||||
Sbjct: 388 taccacaagagctgcttcaagtg 410
>emb|AX412728.1| Sequence 492 from Patent WO0222675
Length = 573
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaagtg 465
|||||||||||||||||||||||
Sbjct: 388 taccacaagagctgcttcaagtg 410
>gb|AY072143.1| Arabidopsis thaliana At1g10200 mRNA sequence
Length = 873
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaagtg 465
|||||||||||||||||||||||
Sbjct: 438 taccacaagagctgcttcaagtg 460
>gb|AY085377.1| Arabidopsis thaliana clone 148790 mRNA, complete sequence
Length = 886
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaagtg 465
|||||||||||||||||||||||
Sbjct: 472 taccacaagagctgcttcaagtg 494
>gb|AC005489.1|AC005489 Genomic sequence for Arabidopsis thaliana BAC F14N23 from Chromosome 1,
complete sequence
Length = 100746
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 443 taccacaagagctgcttcaagtg 465
|||||||||||||||||||||||
Sbjct: 27222 taccacaagagctgcttcaagtg 27200
>emb|BX825681.1|CNS0A6AT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL56ZA06 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 912
Score = 46.1 bits (23), Expect = 0.012
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 383 tgtgcagcttgccagaaaacagtgtacccgctggagaagttgactctggaaggcgagtcc 442
||||||||||| |||||||||| || || || |||||| |||| ||||||| || ||
Sbjct: 413 tgtgcagcttgtaagaaaacagtttatcctctagagaagatgacaatggaaggagaatct 472
Query: 443 taccacaagagctgcttca 461
|||||||||| |||||||
Sbjct: 473 taccacaagacttgcttca 491
Score = 46.1 bits (23), Expect = 0.012
Identities = 83/103 (80%)
Strand = Plus / Plus
Query: 165 catgcttcaagtgcagccactgcaaagggatcctctcgatgtgcagctactcttccatgg 224
||||||||| ||||||||| ||||| || | ||| ||| || | |||||| |||||||
Sbjct: 195 catgcttcaggtgcagccattgcaatggcactctcgtgatatgtaactactcatccatgg 254
Query: 225 acggtgtgctgtactgcaagacccacttcgagcagctcttcaa 267
| || || |||| ||||||||||| || || |||||||||||
Sbjct: 255 atggagttttgtattgcaagacccattttgaacagctcttcaa 297
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 46.1 bits (23), Expect = 0.012
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 383 tgtgcagcttgccagaaaacagtgtacccgctggagaagttgactctggaaggcgagtcc 442
||||||||||| |||||||||| || || || |||||| |||| ||||||| || ||
Sbjct: 22623198 tgtgcagcttgtaagaaaacagtttatcctctagagaagatgacaatggaaggagaatct 22623139
Query: 443 taccacaagagctgcttca 461
|||||||||| |||||||
Sbjct: 22623138 taccacaagacttgcttca 22623120
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 211 ctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaa 267
|||||| |||||||| || || |||| ||||||||||| || || |||||||||||
Sbjct: 22623549 ctactcatccatggatggagttttgtattgcaagacccattttgaacagctcttcaa 22623493
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| ||||||||| || |||| ||||
Sbjct: 20668429 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggaagttacaaccac 20668485
>emb|AL137898.1|ATT20K12 Arabidopsis thaliana DNA chromosome 3, BAC clone T20K12
Length = 109155
Score = 46.1 bits (23), Expect = 0.012
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 383 tgtgcagcttgccagaaaacagtgtacccgctggagaagttgactctggaaggcgagtcc 442
||||||||||| |||||||||| || || || |||||| |||| ||||||| || ||
Sbjct: 53059 tgtgcagcttgtaagaaaacagtttatcctctagagaagatgacaatggaaggagaatct 53000
Query: 443 taccacaagagctgcttca 461
|||||||||| |||||||
Sbjct: 52999 taccacaagacttgcttca 52981
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 211 ctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaa 267
|||||| |||||||| || || |||| ||||||||||| || || |||||||||||
Sbjct: 53410 ctactcatccatggatggagttttgtattgcaagacccattttgaacagctcttcaa 53354
>gb|BT022103.1| Arabidopsis thaliana At3g61230 mRNA, complete cds
Length = 710
Score = 46.1 bits (23), Expect = 0.012
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 383 tgtgcagcttgccagaaaacagtgtacccgctggagaagttgactctggaaggcgagtcc 442
||||||||||| |||||||||| || || || |||||| |||| ||||||| || ||
Sbjct: 370 tgtgcagcttgtaagaaaacagtttatcctctagagaagatgacaatggaaggagaatct 429
Query: 443 taccacaagagctgcttca 461
|||||||||| |||||||
Sbjct: 430 taccacaagacttgcttca 448
Score = 46.1 bits (23), Expect = 0.012
Identities = 83/103 (80%)
Strand = Plus / Plus
Query: 165 catgcttcaagtgcagccactgcaaagggatcctctcgatgtgcagctactcttccatgg 224
||||||||| ||||||||| ||||| || | ||| ||| || | |||||| |||||||
Sbjct: 152 catgcttcaggtgcagccattgcaatggcactctcgtgatatgtaactactcatccatgg 211
Query: 225 acggtgtgctgtactgcaagacccacttcgagcagctcttcaa 267
| || || |||| ||||||||||| || || |||||||||||
Sbjct: 212 atggagttttgtattgcaagacccattttgaacagctcttcaa 254
>ref|NM_100894.2| Arabidopsis thaliana transcription factor/ zinc ion binding
AT1G10200 mRNA, complete cds
Length = 944
Score = 46.1 bits (23), Expect = 0.012
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaagtg 465
|||||||||||||||||||||||
Sbjct: 472 taccacaagagctgcttcaagtg 494
>ref|NM_115987.2| Arabidopsis thaliana zinc ion binding AT3G61230 mRNA, complete cds
Length = 1351
Score = 46.1 bits (23), Expect = 0.012
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 383 tgtgcagcttgccagaaaacagtgtacccgctggagaagttgactctggaaggcgagtcc 442
||||||||||| |||||||||| || || || |||||| |||| ||||||| || ||
Sbjct: 413 tgtgcagcttgtaagaaaacagtttatcctctagagaagatgacaatggaaggagaatct 472
Query: 443 taccacaagagctgcttca 461
|||||||||| |||||||
Sbjct: 473 taccacaagacttgcttca 491
Score = 46.1 bits (23), Expect = 0.012
Identities = 83/103 (80%)
Strand = Plus / Plus
Query: 165 catgcttcaagtgcagccactgcaaagggatcctctcgatgtgcagctactcttccatgg 224
||||||||| ||||||||| ||||| || | ||| ||| || | |||||| |||||||
Sbjct: 195 catgcttcaggtgcagccattgcaatggcactctcgtgatatgtaactactcatccatgg 254
Query: 225 acggtgtgctgtactgcaagacccacttcgagcagctcttcaa 267
| || || |||| ||||||||||| || || |||||||||||
Sbjct: 255 atggagttttgtattgcaagacccattttgaacagctcttcaa 297
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 46.1 bits (23), Expect = 0.012
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 383 tgtgcagcttgccagaaaacagtgtacccgctggagaagttgactctggaaggcgagtcc 442
||||||||||| |||||||||| || || || |||||| |||| ||||||| || ||
Sbjct: 22675899 tgtgcagcttgtaagaaaacagtttatcctctagagaagatgacaatggaaggagaatct 22675840
Query: 443 taccacaagagctgcttca 461
|||||||||| |||||||
Sbjct: 22675839 taccacaagacttgcttca 22675821
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 211 ctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaa 267
|||||| |||||||| || || |||| ||||||||||| || || |||||||||||
Sbjct: 22676250 ctactcatccatggatggagttttgtattgcaagacccattttgaacagctcttcaa 22676194
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| ||||||||| || |||| ||||
Sbjct: 20715954 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggaagttacaaccac 20716010
>gb|BE038353.1|BE038353 AA12D10 AA Arabidopsis thaliana cDNA 5' similar to transcription
factor l2, mRNA sequence
Length = 709
Score = 44.1 bits (22), Expect = 0.046
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| |||||| ||||| |||| ||||
Sbjct: 647 ctgtactgcaagcaccatttcgctcagctcttcaaggagaangggagttacaaccac 703
>gb|BX841501.1|BX841501 BX841501 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB90ZE10 5PRIM, mRNA sequence
Length = 845
Score = 44.1 bits (22), Expect = 0.046
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaagt 464
||||||||||||||||||||||
Sbjct: 433 taccacaagagctgcttcaagt 454
>gb|BP624866.1|BP624866 BP624866 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-41-N03 3',
mRNA sequence
Length = 419
Score = 44.1 bits (22), Expect = 0.046
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaagggga 566
|||||||||||| ||| ||||| ||||| |||| |||||||||||
Sbjct: 326 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggga 281
>gb|BP665739.1|BP665739 BP665739 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-17-G11 3',
mRNA sequence
Length = 451
Score = 44.1 bits (22), Expect = 0.046
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaagggga 566
|||||||||||| ||| ||||| ||||| |||| |||||||||||
Sbjct: 291 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggga 246
>gb|BP668690.1|BP668690 BP668690 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-28-D19 3',
mRNA sequence
Length = 425
Score = 44.1 bits (22), Expect = 0.046
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 443 taccacaagagctgcttcaagt 464
||||||||||||||||||||||
Sbjct: 415 taccacaagagctgcttcaagt 394
>gb|BP790629.1|BP790629 BP790629 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-44-A22 3',
mRNA sequence
Length = 437
Score = 44.1 bits (22), Expect = 0.046
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 443 taccacaagagctgcttcaagt 464
||||||||||||||||||||||
Sbjct: 412 taccacaagagctgcttcaagt 391
>emb|CR379094.1| Arabidopsis thaliana transposon insertion STS GT_5.112768, sequence
tagged site
Length = 140
Score = 44.1 bits (22), Expect = 0.046
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 444 accacaagagctgcttcaagtg 465
||||||||||||||||||||||
Sbjct: 1 accacaagagctgcttcaagtg 22
>gb|AA042167.1|AA042167 24488 CD4-13 Arabidopsis thaliana cDNA clone E3E11T7, mRNA sequence
Length = 595
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| ||||||||| || |||| ||||
Sbjct: 283 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggaagttacaaccac 227
>gb|AA042777.1|AA042777 25033 CD4-13 Arabidopsis thaliana cDNA clone E8G5T7, mRNA sequence
Length = 576
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| ||||||||| || |||| ||||
Sbjct: 283 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggaagttacaaccac 227
>gb|AV789436.1|AV789436 AV789436 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-83-K09 3',
mRNA sequence
Length = 426
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| ||||||||| || |||| ||||
Sbjct: 326 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggaagttacaaccac 270
>gb|AV814356.1|AV814356 AV814356 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-82-K20 3',
mRNA sequence
Length = 404
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| ||||||||| || |||| ||||
Sbjct: 326 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggaagttacaaccac 270
>gb|BU636113.1|BU636113 045F10 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 750
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| ||||||||| || |||| ||||
Sbjct: 585 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggaagttacaaccac 641
>gb|CB260281.1|CB260281 83-E011176-013-009-E21-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770E219Q 5-PRIME, mRNA sequence
Length = 588
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| ||||||||| || |||| ||||
Sbjct: 204 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggaagttacaaccac 260
>gb|AV539402.1|AV539402 AV539402 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ131c10F 3', mRNA sequence
Length = 389
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| ||||||||| || |||| ||||
Sbjct: 325 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggaagttacaaccac 269
>gb|AV543368.1|AV543368 AV543368 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ20a03F 3', mRNA sequence
Length = 350
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| ||||||||| || |||| ||||
Sbjct: 206 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggaagttacaaccac 150
>gb|AV567179.1|AV567179 AV567179 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQL08c07F 3', mRNA sequence
Length = 550
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| ||||||||| || |||| ||||
Sbjct: 328 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggaagttacaaccac 272
>gb|CK120429.1|CK120429 218l07.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011L07218
5-PRIME, mRNA sequence
Length = 512
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| ||||||||| || |||| ||||
Sbjct: 189 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggaagttacaaccac 245
>gb|BP564751.1|BP564751 BP564751 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-09-C17 3',
mRNA sequence
Length = 441
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| ||||||||| || |||| ||||
Sbjct: 328 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggaagttacaaccac 272
>gb|BP565750.1|BP565750 BP565750 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-51-D06 3',
mRNA sequence
Length = 421
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| ||||||||| || |||| ||||
Sbjct: 326 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggaagttacaaccac 270
>gb|BP565761.1|BP565761 BP565761 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-51-D21 3',
mRNA sequence
Length = 409
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| ||||||||| || |||| ||||
Sbjct: 326 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggaagttacaaccac 270
>gb|BP566679.1|BP566679 BP566679 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-54-O07 3',
mRNA sequence
Length = 470
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| ||||||||| || |||| ||||
Sbjct: 328 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggaagttacaaccac 272
>gb|BP568267.1|BP568267 BP568267 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-61-H06 3',
mRNA sequence
Length = 445
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| ||||||||| || |||| ||||
Sbjct: 332 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggaagttacaaccac 276
>gb|BP570549.1|BP570549 BP570549 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-72-P17 3',
mRNA sequence
Length = 478
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| ||||||||| || |||| ||||
Sbjct: 326 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggaagttacaaccac 270
>gb|BP572103.1|BP572103 BP572103 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-78-L14 3',
mRNA sequence
Length = 440
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 521 ctgtactgcaagatccacttcgcgcagctgttcatggagaaggggagctacagccac 577
|||||||||||| ||| ||||| ||||| |||| ||||||||| || |||| ||||
Sbjct: 326 ctgtactgcaagcaccatttcgctcagctcttcaaggagaagggaagttacaaccac 270
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 353,737
Number of Sequences: 1013581
Number of extensions: 353737
Number of successful extensions: 30332
Number of sequences better than 0.5: 103
Number of HSP's better than 0.5 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29577
Number of HSP's gapped (non-prelim): 755
length of query: 993
length of database: 908,940,872
effective HSP length: 20
effective length of query: 973
effective length of database: 888,669,252
effective search space: 864675182196
effective search space used: 864675182196
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)