BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3742548.2.1
(554 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC073433.9|AC073433 Arabidopsis thaliana chromosome 1 BA... 40 0.39
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 40 0.39
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 40 0.39
>gb|AC073433.9|AC073433 Arabidopsis thaliana chromosome 1 BAC F19C17 genomic sequence, complete
sequence
Length = 117055
Score = 40.1 bits (20), Expect = 0.39
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 68 aaaatctttcataatttttt 87
||||||||||||||||||||
Sbjct: 91408 aaaatctttcataatttttt 91389
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 40.1 bits (20), Expect = 0.39
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 aaaatctttcataatttttt 87
||||||||||||||||||||
Sbjct: 216771 aaaatctttcataatttttt 216790
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 40.1 bits (20), Expect = 0.39
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 aaaatctttcataatttttt 87
||||||||||||||||||||
Sbjct: 15732881 aaaatctttcataatttttt 15732900
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 195,492
Number of Sequences: 1013581
Number of extensions: 195492
Number of successful extensions: 14351
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14166
Number of HSP's gapped (non-prelim): 185
length of query: 554
length of database: 908,940,872
effective HSP length: 20
effective length of query: 534
effective length of database: 888,669,252
effective search space: 474549380568
effective search space used: 474549380568
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)