BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712941.2.1
(1473 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB011474.1| Arabidopsis thaliana genomic DNA, chromosom... 46 0.017
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 46 0.017
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 46 0.017
>dbj|AB011474.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2A18
Length = 79899
Score = 46.1 bits (23), Expect = 0.017
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1244 gccaatattattatgtcatgttc 1266
|||||||||||||||||||||||
Sbjct: 40698 gccaatattattatgtcatgttc 40676
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 46.1 bits (23), Expect = 0.017
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1244 gccaatattattatgtcatgttc 1266
|||||||||||||||||||||||
Sbjct: 23352291 gccaatattattatgtcatgttc 23352269
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 46.1 bits (23), Expect = 0.017
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1244 gccaatattattatgtcatgttc 1266
|||||||||||||||||||||||
Sbjct: 26441444 gccaatattattatgtcatgttc 26441422
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 712,569
Number of Sequences: 1013581
Number of extensions: 712569
Number of successful extensions: 52453
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52087
Number of HSP's gapped (non-prelim): 366
length of query: 1473
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1452
effective length of database: 887,655,671
effective search space: 1288876034292
effective search space used: 1288876034292
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)