BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696569.2.1
(1022 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA042239.1|AA042239 24560 CD4-13 Arabidopsis thaliana cD... 48 0.003
gb|AV831530.1|AV831530 AV831530 RAFL9 Arabidopsis thaliana ... 48 0.003
gb|AV536668.1|AV536668 AV536668 Arabidopsis thaliana liquid... 48 0.003
gb|BP806706.1|BP806706 BP806706 RAFL16 Arabidopsis thaliana... 48 0.003
gb|BP837993.1|BP837993 BP837993 RAFL19 Arabidopsis thaliana... 48 0.003
gb|BP840903.1|BP840903 BP840903 RAFL19 Arabidopsis thaliana... 48 0.003
gb|BP856066.1|BP856066 BP856066 RAFL21 Arabidopsis thaliana... 48 0.003
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 48 0.003
gb|AY080738.1| Arabidopsis thaliana At1g20190 mRNA sequence 48 0.003
gb|AF332436.1| Arabidopsis thaliana clone C00124 (e) putati... 48 0.003
gb|AC022472.2|T20H2 Sequence of BAC T20H2 from Arabidopsis ... 48 0.003
emb|CQ805880.1| Sequence 2291 from Patent WO2004035798 48 0.003
ref|NM_101872.2| Arabidopsis thaliana ATEXPA11 (ARABIDOPSIS... 48 0.003
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 48 0.003
gb|BE038703.1|BE038703 AB04C11 AB Arabidopsis thaliana cDNA... 46 0.012
gb|BU635169.1|BU635169 016F09 Infected Arabidopsis Leaf Ara... 46 0.012
gb|BP607883.1|BP607883 BP607883 RAFL16 Arabidopsis thaliana... 46 0.012
gb|CB253996.1|CB253996 81-E018427-019-008-A21-T7R MPIZ-ADIS... 46 0.012
gb|AF360291.1| Arabidopsis thaliana putative expansin prote... 46 0.012
gb|AY051047.1| Arabidopsis thaliana putative expansin prote... 46 0.012
gb|AY072167.1| Arabidopsis thaliana putative expansin prote... 46 0.012
gb|AY117342.1| Arabidopsis thaliana putative expansin prote... 46 0.012
emb|AX505396.1| Sequence 91 from Patent WO0216655 46 0.012
emb|AX506374.1| Sequence 1069 from Patent WO0216655 46 0.012
gb|AY089063.1| Arabidopsis thaliana clone 255048 mRNA, comp... 46 0.012
gb|AC073178.9|AC073178 Arabidopsis thaliana chromosome 1 BA... 46 0.012
gb|AC004138.3| Arabidopsis thaliana chromosome 2 clone T17M... 46 0.012
emb|BX820188.1|CNS0A9CV Arabidopsis thaliana Full-length cD... 46 0.012
emb|BX820349.1|CNS0A9O1 Arabidopsis thaliana Full-length cD... 46 0.012
emb|BX815073.1|CNS0ABGA Arabidopsis thaliana Full-length cD... 46 0.012
emb|BX815362.1|CNS0ABIP Arabidopsis thaliana Full-length cD... 46 0.012
gb|U30476.1|ATU30476 Arabidopsis thaliana expansin At-EXPA1... 46 0.012
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 46 0.012
ref|NM_126361.3| Arabidopsis thaliana ATEXPA15 (ARABIDOPSIS... 46 0.012
ref|NM_105622.2| Arabidopsis thaliana ATEXPA1 (ARABIDOPSIS ... 46 0.012
ref|NM_179537.1| Arabidopsis thaliana ATEXPA1 (ARABIDOPSIS ... 46 0.012
ref|NM_179538.1| Arabidopsis thaliana ATEXPA1 (ARABIDOPSIS ... 46 0.012
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 46 0.012
gb|CL500496.1|CL500496 SAIL_683_G12.v1 SAIL Collection Arab... 44 0.047
gb|AV821236.1|AV821236 AV821236 RAFL3 Arabidopsis thaliana ... 44 0.047
gb|AY045693.1| Arabidopsis thaliana AT4g38500/F20M13_60 mRN... 44 0.047
gb|AC069558.5|AC069558 Genomic Sequence For Arabidopsis tha... 44 0.047
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 44 0.047
emb|AL035540.1|ATF20M13 Arabidopsis thaliana DNA chromosome... 44 0.047
emb|AL035539.1|ATF22I13 Arabidopsis thaliana DNA chromosome... 44 0.047
emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosom... 44 0.047
ref|NM_120011.2| Arabidopsis thaliana unknown protein AT4G3... 44 0.047
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 44 0.047
emb|AJ595013.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.19
gb|AI999398.1|AI999398 701555702 A. thaliana, Columbia Col-... 42 0.19
gb|AV827688.1|AV827688 AV827688 RAFL9 Arabidopsis thaliana ... 42 0.19
gb|AV439843.1|AV439843 AV439843 Arabidopsis thaliana above-... 42 0.19
gb|AV524938.2|AV524938 AV524938 Arabidopsis thaliana aboveg... 42 0.19
gb|CB254155.1|CB254155 78-E018363-019-007-L20-T7R MPIZ-ADIS... 42 0.19
gb|AF104919.1|T15B16 Arabidopsis thaliana BAC T15B16 42 0.19
gb|AY052247.1| Arabidopsis thaliana At1g26770/T24P13_14 mRN... 42 0.19
gb|AY060512.1| Arabidopsis thaliana At1g26770/T24P13_14 mRN... 42 0.19
emb|AX506351.1| Sequence 1046 from Patent WO0216655 42 0.19
gb|AY085242.1| Arabidopsis thaliana clone 14132 mRNA, compl... 42 0.19
gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis tha... 42 0.19
emb|BX816448.1|CNS0ADWQ Arabidopsis thaliana Full-length cD... 42 0.19
emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, shor... 42 0.19
gb|AF229437.1| Arabidopsis thaliana expansin 10 (EXPA10) mR... 42 0.19
gb|AF229431.1| Arabidopsis thaliana expansin 10 (EXPA10) ge... 42 0.19
emb|AL161492.2|ATCHRIV4 Arabidopsis thaliana DNA chromosome... 42 0.19
ref|NM_116393.1| Arabidopsis thaliana ATEXPA17 (ARABIDOPSIS... 42 0.19
ref|NM_102440.3| Arabidopsis thaliana ATEXPA10 (ARABIDOPSIS... 42 0.19
>gb|AA042239.1|AA042239 24560 CD4-13 Arabidopsis thaliana cDNA clone E4H10T7, mRNA sequence
Length = 550
Score = 48.1 bits (24), Expect = 0.003
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 106 cggggtacggcacgagcacggcggcgctgagcacggcgctgttcaacgacgg 157
|||||||||| || | ||||||||| | |||||||| ||||||||||||||
Sbjct: 106 cggggtacgggacaatgacggcggcgttaagcacggctctgttcaacgacgg 157
>gb|AV831530.1|AV831530 AV831530 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-90-F14 5',
mRNA sequence
Length = 515
Score = 48.1 bits (24), Expect = 0.003
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 106 cggggtacggcacgagcacggcggcgctgagcacggcgctgttcaacgacgg 157
|||||||||| || | ||||||||| | |||||||| ||||||||||||||
Sbjct: 205 cggggtacgggacaatgacggcggcgttaagcacggctctgttcaacgacgg 256
>gb|AV536668.1|AV536668 AV536668 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII0411R 5', mRNA
sequence
Length = 442
Score = 48.1 bits (24), Expect = 0.003
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 106 cggggtacggcacgagcacggcggcgctgagcacggcgctgttcaacgacgg 157
|||||||||| || | ||||||||| | |||||||| ||||||||||||||
Sbjct: 38 cggggtacgggacaatgacggcggcgttaagcacggctctgttcaacgacgg 89
>gb|BP806706.1|BP806706 BP806706 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-10-N21 5',
mRNA sequence
Length = 414
Score = 48.1 bits (24), Expect = 0.003
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 106 cggggtacggcacgagcacggcggcgctgagcacggcgctgttcaacgacgg 157
|||||||||| || | ||||||||| | |||||||| ||||||||||||||
Sbjct: 205 cggggtacgggacaatgacggcggcgttaagcacggctctgttcaacgacgg 256
>gb|BP837993.1|BP837993 BP837993 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-22-I05 5',
mRNA sequence
Length = 382
Score = 48.1 bits (24), Expect = 0.003
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 106 cggggtacggcacgagcacggcggcgctgagcacggcgctgttcaacgacgg 157
|||||||||| || | ||||||||| | |||||||| ||||||||||||||
Sbjct: 243 cggggtacgggacaatgacggcggcgttaagcacggctctgttcaacgacgg 294
>gb|BP840903.1|BP840903 BP840903 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-31-J05 5',
mRNA sequence
Length = 387
Score = 48.1 bits (24), Expect = 0.003
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 106 cggggtacggcacgagcacggcggcgctgagcacggcgctgttcaacgacgg 157
|||||||||| || | ||||||||| | |||||||| ||||||||||||||
Sbjct: 242 cggggtacgggacaatgacggcggcgttaagcacggctctgttcaacgacgg 293
>gb|BP856066.1|BP856066 BP856066 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-28-L16 5',
mRNA sequence
Length = 400
Score = 48.1 bits (24), Expect = 0.003
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 106 cggggtacggcacgagcacggcggcgctgagcacggcgctgttcaacgacgg 157
|||||||||| || | ||||||||| | |||||||| ||||||||||||||
Sbjct: 272 cggggtacgggacaatgacggcggcgttaagcacggctctgttcaacgacgg 323
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 48.1 bits (24), Expect = 0.003
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 106 cggggtacggcacgagcacggcggcgctgagcacggcgctgttcaacgacgg 157
|||||||||| || | ||||||||| | |||||||| ||||||||||||||
Sbjct: 6999278 cggggtacgggacaatgacggcggcgttaagcacggctctgttcaacgacgg 6999227
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 595 aggtcaccgccagcgacggccgcac 619
|||||||| ||||||||||||||||
Sbjct: 9269302 aggtcaccaccagcgacggccgcac 9269326
>gb|AY080738.1| Arabidopsis thaliana At1g20190 mRNA sequence
Length = 1088
Score = 48.1 bits (24), Expect = 0.003
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 106 cggggtacggcacgagcacggcggcgctgagcacggcgctgttcaacgacgg 157
|||||||||| || | ||||||||| | |||||||| ||||||||||||||
Sbjct: 204 cggggtacgggacaatgacggcggcgttaagcacggctctgttcaacgacgg 255
>gb|AF332436.1| Arabidopsis thaliana clone C00124 (e) putative expansin S2
precursor protein (At1g20190) mRNA, complete cds
Length = 759
Score = 48.1 bits (24), Expect = 0.003
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 106 cggggtacggcacgagcacggcggcgctgagcacggcgctgttcaacgacgg 157
|||||||||| || | ||||||||| | |||||||| ||||||||||||||
Sbjct: 164 cggggtacgggacaatgacggcggcgttaagcacggctctgttcaacgacgg 215
>gb|AC022472.2|T20H2 Sequence of BAC T20H2 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 92710
Score = 48.1 bits (24), Expect = 0.003
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 106 cggggtacggcacgagcacggcggcgctgagcacggcgctgttcaacgacgg 157
|||||||||| || | ||||||||| | |||||||| ||||||||||||||
Sbjct: 12473 cggggtacgggacaatgacggcggcgttaagcacggctctgttcaacgacgg 12524
>emb|CQ805880.1| Sequence 2291 from Patent WO2004035798
Length = 759
Score = 48.1 bits (24), Expect = 0.003
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 106 cggggtacggcacgagcacggcggcgctgagcacggcgctgttcaacgacgg 157
|||||||||| || | ||||||||| | |||||||| ||||||||||||||
Sbjct: 164 cggggtacgggacaatgacggcggcgttaagcacggctctgttcaacgacgg 215
>ref|NM_101872.2| Arabidopsis thaliana ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN A11)
AT1G20190 (ATEXPA11) mRNA, complete cds
Length = 1073
Score = 48.1 bits (24), Expect = 0.003
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 106 cggggtacggcacgagcacggcggcgctgagcacggcgctgttcaacgacgg 157
|||||||||| || | ||||||||| | |||||||| ||||||||||||||
Sbjct: 205 cggggtacgggacaatgacggcggcgttaagcacggctctgttcaacgacgg 256
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 48.1 bits (24), Expect = 0.003
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 106 cggggtacggcacgagcacggcggcgctgagcacggcgctgttcaacgacgg 157
|||||||||| || | ||||||||| | |||||||| ||||||||||||||
Sbjct: 6999454 cggggtacgggacaatgacggcggcgttaagcacggctctgttcaacgacgg 6999403
Score = 46.1 bits (23), Expect = 0.012
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
|||||||| |||||||||||||| ||||| |||||
Sbjct: 26146559 aactggggacagaactggcagagtaactcttacct 26146593
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 595 aggtcaccgccagcgacggccgcac 619
|||||||| ||||||||||||||||
Sbjct: 9260682 aggtcaccaccagcgacggccgcac 9260706
>gb|BE038703.1|BE038703 AB04C11 AB Arabidopsis thaliana cDNA 5' similar to expansin
at-exp1, mRNA sequence
Length = 703
Score = 46.1 bits (23), Expect = 0.012
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
|||||||| |||||||||||||| ||||| |||||
Sbjct: 73 aactggggacagaactggcagagtaactcttacct 107
>gb|BU635169.1|BU635169 016F09 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 721
Score = 46.1 bits (23), Expect = 0.012
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
|||||||| |||||||||||||| ||||| |||||
Sbjct: 302 aactggggacagaactggcagagtaactcttacct 336
Score = 42.1 bits (21), Expect = 0.19
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 339 cgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtg 398
|||||||| || ||| | |||||||| || |||||||| | | | |||||||||||||||
Sbjct: 104 cgcatcgctcaatacagagccggcattgtccccgtcgcttaccgaagagtgccgtgcgtg 163
Query: 399 a 399
|
Sbjct: 164 a 164
>gb|BP607883.1|BP607883 BP607883 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-76-J06 3',
mRNA sequence
Length = 421
Score = 46.1 bits (23), Expect = 0.012
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
|||||||| |||||||||||||| ||||| |||||
Sbjct: 300 aactggggacagaactggcagagtaactcttacct 266
>gb|CB253996.1|CB253996 81-E018427-019-008-A21-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768A218Q 5-PRIME, mRNA sequence
Length = 522
Score = 46.1 bits (23), Expect = 0.012
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
|||||||| |||||||||||||| ||||| |||||
Sbjct: 310 aactggggacagaactggcagagtaactcttacct 344
Score = 42.1 bits (21), Expect = 0.19
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 339 cgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtg 398
|||||||| || ||| | |||||||| || |||||||| | | | |||||||||||||||
Sbjct: 112 cgcatcgctcaatacagagccggcattgtccccgtcgcttaccgaagagtgccgtgcgtg 171
Query: 399 a 399
|
Sbjct: 172 a 172
>gb|AF360291.1| Arabidopsis thaliana putative expansin protein At-EXP1 (At1g69530)
mRNA, complete cds
Length = 1339
Score = 46.1 bits (23), Expect = 0.012
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
|||||||| |||||||||||||| ||||| |||||
Sbjct: 705 aactggggacagaactggcagagtaactcttacct 739
Score = 42.1 bits (21), Expect = 0.19
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 339 cgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtg 398
|||||||| || ||| | |||||||| || |||||||| | | | |||||||||||||||
Sbjct: 507 cgcatcgctcaatacagagccggcattgtccccgtcgcttaccgaagagtgccgtgcgtg 566
Query: 399 a 399
|
Sbjct: 567 a 567
>gb|AY051047.1| Arabidopsis thaliana putative expansin protein EXP1 (At1g69530)
mRNA, complete cds
Length = 784
Score = 46.1 bits (23), Expect = 0.012
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
|||||||| |||||||||||||| ||||| |||||
Sbjct: 598 aactggggacagaactggcagagtaactcttacct 632
Score = 42.1 bits (21), Expect = 0.19
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 339 cgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtg 398
|||||||| || ||| | |||||||| || |||||||| | | | |||||||||||||||
Sbjct: 400 cgcatcgctcaatacagagccggcattgtccccgtcgcttaccgaagagtgccgtgcgtg 459
Query: 399 a 399
|
Sbjct: 460 a 460
>gb|AY072167.1| Arabidopsis thaliana putative expansin protein (At2g03090) mRNA,
complete cds
Length = 1384
Score = 46.1 bits (23), Expect = 0.012
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 417 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaa 463
||||| |||||||| ||||| ||||||||||| || ||||||||||
Sbjct: 576 ttcacaatcaacggtcactcttacttcaaccttgtcttggtgaccaa 622
>gb|AY117342.1| Arabidopsis thaliana putative expansin protein (At2g03090) mRNA,
complete cds
Length = 793
Score = 46.1 bits (23), Expect = 0.012
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 417 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaa 463
||||| |||||||| ||||| ||||||||||| || ||||||||||
Sbjct: 487 ttcacaatcaacggtcactcttacttcaaccttgtcttggtgaccaa 533
>emb|AX505396.1| Sequence 91 from Patent WO0216655
Length = 753
Score = 46.1 bits (23), Expect = 0.012
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
|||||||| |||||||||||||| ||||| |||||
Sbjct: 598 aactggggacagaactggcagagtaactcttacct 632
Score = 42.1 bits (21), Expect = 0.19
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 339 cgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtg 398
|||||||| || ||| | |||||||| || |||||||| | | | |||||||||||||||
Sbjct: 400 cgcatcgctcaatacagagccggcattgtccccgtcgcttaccgaagagtgccgtgcgtg 459
Query: 399 a 399
|
Sbjct: 460 a 460
>emb|AX506374.1| Sequence 1069 from Patent WO0216655
Length = 747
Score = 46.1 bits (23), Expect = 0.012
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 417 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaa 463
||||| |||||||| ||||| ||||||||||| || ||||||||||
Sbjct: 472 ttcacaatcaacggtcactcttacttcaaccttgtcttggtgaccaa 518
>gb|AY089063.1| Arabidopsis thaliana clone 255048 mRNA, complete sequence
Length = 1366
Score = 46.1 bits (23), Expect = 0.012
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
|||||||| |||||||||||||| ||||| |||||
Sbjct: 795 aactggggacagaactggcagagtaactcttacct 829
Score = 42.1 bits (21), Expect = 0.19
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 339 cgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtg 398
|||||||| || ||| | |||||||| || |||||||| | | | |||||||||||||||
Sbjct: 598 cgcatcgctcaatacagagccggcattgtccccgtcgcttaccgaagagtgccgtgcgtg 657
Query: 399 a 399
|
Sbjct: 658 a 658
>gb|AC073178.9|AC073178 Arabidopsis thaliana chromosome 1 BAC F10D13 genomic sequence, complete
sequence
Length = 107214
Score = 46.1 bits (23), Expect = 0.012
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
|||||||| |||||||||||||| ||||| |||||
Sbjct: 86217 aactggggacagaactggcagagtaactcttacct 86251
>gb|AC004138.3| Arabidopsis thaliana chromosome 2 clone T17M13 map CIC11A04, complete
sequence
Length = 104016
Score = 46.1 bits (23), Expect = 0.012
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 417 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaa 463
||||| |||||||| ||||| ||||||||||| || ||||||||||
Sbjct: 97874 ttcacaatcaacggtcactcttacttcaaccttgtcttggtgaccaa 97828
>emb|BX820188.1|CNS0A9CV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS8ZD01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1320
Score = 46.1 bits (23), Expect = 0.012
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 417 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaa 463
||||| |||||||| ||||| ||||||||||| || ||||||||||
Sbjct: 563 ttcacaatcaacggtcactcttacttcaaccttgtcttggtgaccaa 609
>emb|BX820349.1|CNS0A9O1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH25ZA10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1264
Score = 46.1 bits (23), Expect = 0.012
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 417 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaa 463
||||| |||||||| ||||| ||||||||||| || ||||||||||
Sbjct: 563 ttcacaatcaacggtcactcttacttcaaccttgtcttggtgaccaa 609
>emb|BX815073.1|CNS0ABGA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS30ZB03 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1287
Score = 46.1 bits (23), Expect = 0.012
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
|||||||| |||||||||||||| ||||| |||||
Sbjct: 689 aactggggacagaactggcagagtaactcttacct 723
Score = 42.1 bits (21), Expect = 0.19
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 339 cgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtg 398
|||||||| || ||| | |||||||| || |||||||| | | | |||||||||||||||
Sbjct: 491 cgcatcgctcaatacagagccggcattgtccccgtcgcttaccgaagagtgccgtgcgtg 550
Query: 399 a 399
|
Sbjct: 551 a 551
>emb|BX815362.1|CNS0ABIP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS54ZG10 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1153
Score = 46.1 bits (23), Expect = 0.012
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
|||||||| |||||||||||||| ||||| |||||
Sbjct: 666 aactggggacagaactggcagagtaactcttacct 700
Score = 42.1 bits (21), Expect = 0.19
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 339 cgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtg 398
|||||||| || ||| | |||||||| || |||||||| | | | |||||||||||||||
Sbjct: 468 cgcatcgctcaatacagagccggcattgtccccgtcgcttaccgaagagtgccgtgcgtg 527
Query: 399 a 399
|
Sbjct: 528 a 528
>gb|U30476.1|ATU30476 Arabidopsis thaliana expansin At-EXPA1 (At-EXPA1) mRNA, partial cds
Length = 749
Score = 46.1 bits (23), Expect = 0.012
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
|||||||| |||||||||||||| ||||| |||||
Sbjct: 559 aactggggacagaactggcagagtaactcttacct 593
Score = 42.1 bits (21), Expect = 0.19
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 339 cgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtg 398
|||||||| || ||| | |||||||| || |||||||| | | | |||||||||||||||
Sbjct: 361 cgcatcgctcaatacagagccggcattgtccccgtcgcttaccgaagagtgccgtgcgtg 420
Query: 399 a 399
|
Sbjct: 421 a 421
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 46.1 bits (23), Expect = 0.012
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
|||||||| |||||||||||||| ||||| |||||
Sbjct: 10385092 aactggggacagaactggcagagtaactcttacct 10385126
>ref|NM_126361.3| Arabidopsis thaliana ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)
AT2G03090 (ATEXPA15) mRNA, complete cds
Length = 1358
Score = 46.1 bits (23), Expect = 0.012
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 417 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaa 463
||||| |||||||| ||||| ||||||||||| || ||||||||||
Sbjct: 576 ttcacaatcaacggtcactcttacttcaaccttgtcttggtgaccaa 622
>ref|NM_105622.2| Arabidopsis thaliana ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)
AT1G69530 (ATEXPA1) transcript variant AT1G69530.1 mRNA,
complete cds
Length = 1396
Score = 46.1 bits (23), Expect = 0.012
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
|||||||| |||||||||||||| ||||| |||||
Sbjct: 796 aactggggacagaactggcagagtaactcttacct 830
Score = 42.1 bits (21), Expect = 0.19
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 339 cgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtg 398
|||||||| || ||| | |||||||| || |||||||| | | | |||||||||||||||
Sbjct: 598 cgcatcgctcaatacagagccggcattgtccccgtcgcttaccgaagagtgccgtgcgtg 657
Query: 399 a 399
|
Sbjct: 658 a 658
>ref|NM_179537.1| Arabidopsis thaliana ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)
AT1G69530 (ATEXPA1) transcript variant AT1G69530.2 mRNA,
complete cds
Length = 1309
Score = 46.1 bits (23), Expect = 0.012
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
|||||||| |||||||||||||| ||||| |||||
Sbjct: 705 aactggggacagaactggcagagtaactcttacct 739
Score = 42.1 bits (21), Expect = 0.19
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 339 cgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtg 398
|||||||| || ||| | |||||||| || |||||||| | | | |||||||||||||||
Sbjct: 507 cgcatcgctcaatacagagccggcattgtccccgtcgcttaccgaagagtgccgtgcgtg 566
Query: 399 a 399
|
Sbjct: 567 a 567
>ref|NM_179538.1| Arabidopsis thaliana ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)
AT1G69530 (ATEXPA1) transcript variant AT1G69530.3 mRNA,
complete cds
Length = 1322
Score = 46.1 bits (23), Expect = 0.012
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 537 aactggggccagaactggcagagcaactcgtacct 571
|||||||| |||||||||||||| ||||| |||||
Sbjct: 796 aactggggacagaactggcagagtaactcttacct 830
Score = 42.1 bits (21), Expect = 0.19
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 339 cgcatcgcgcagtaccgcgccggcatcgtgcccgtcgcgttcaggagagtgccgtgcgtg 398
|||||||| || ||| | |||||||| || |||||||| | | | |||||||||||||||
Sbjct: 598 cgcatcgctcaatacagagccggcattgtccccgtcgcttaccgaagagtgccgtgcgtg 657
Query: 399 a 399
|
Sbjct: 658 a 658
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 46.1 bits (23), Expect = 0.012
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 417 ttcaccatcaacgggcactcctacttcaacctggtgctggtgaccaa 463
||||| |||||||| ||||| ||||||||||| || ||||||||||
Sbjct: 917635 ttcacaatcaacggtcactcttacttcaaccttgtcttggtgaccaa 917589
>gb|CL500496.1|CL500496 SAIL_683_G12.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_683_G12.v1, DNA sequence
Length = 941
Score = 44.1 bits (22), Expect = 0.047
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 817 gagaacgacgaagacgaagacgaagcctct 846
||||| || |||||||||||||||||||||
Sbjct: 239 gagaaagaggaagacgaagacgaagcctct 268
>gb|AV821236.1|AV821236 AV821236 RAFL3 Arabidopsis thaliana cDNA clone RAFL03-01-G10 5',
mRNA sequence
Length = 631
Score = 44.1 bits (22), Expect = 0.047
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 810 cgacgaggagaacgacgaagacgaag 835
|||||||||||||||||| |||||||
Sbjct: 311 cgacgaggagaacgacgacgacgaag 336
>gb|AY045693.1| Arabidopsis thaliana AT4g38500/F20M13_60 mRNA, complete cds
Length = 2372
Score = 44.1 bits (22), Expect = 0.047
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 810 cgacgaggagaacgacgaagacgaag 835
|||||||||||||||||| |||||||
Sbjct: 310 cgacgaggagaacgacgacgacgaag 335
>gb|AC069558.5|AC069558 Genomic Sequence For Arabidopsis thaliana Clone T5G13 From Chromosome
IV, complete sequence
Length = 107740
Score = 44.1 bits (22), Expect = 0.047
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 810 cgacgaggagaacgacgaagacgaag 835
|||||||||||||||||| |||||||
Sbjct: 48520 cgacgaggagaacgacgacgacgaag 48495
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 44.1 bits (22), Expect = 0.047
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 810 cgacgaggagaacgacgaagacgaag 835
|||||||||||||||||| |||||||
Sbjct: 13920856 cgacgaggagaacgacgacgacgaag 13920881
>emb|AL035540.1|ATF20M13 Arabidopsis thaliana DNA chromosome 4, BAC clone F20M13 (ESSA project)
Length = 91938
Score = 44.1 bits (22), Expect = 0.047
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 810 cgacgaggagaacgacgaagacgaag 835
|||||||||||||||||| |||||||
Sbjct: 17948 cgacgaggagaacgacgacgacgaag 17973
>emb|AL035539.1|ATF22I13 Arabidopsis thaliana DNA chromosome 4, BAC clone F22I13 (ESSA project)
Length = 93760
Score = 44.1 bits (22), Expect = 0.047
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 810 cgacgaggagaacgacgaagacgaag 835
|||||||||||||||||| |||||||
Sbjct: 76049 cgacgaggagaacgacgacgacgaag 76074
>emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89
Length = 199789
Score = 44.1 bits (22), Expect = 0.047
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 810 cgacgaggagaacgacgaagacgaag 835
|||||||||||||||||| |||||||
Sbjct: 117007 cgacgaggagaacgacgacgacgaag 117032
>ref|NM_120011.2| Arabidopsis thaliana unknown protein AT4G38500 mRNA, complete cds
Length = 2818
Score = 44.1 bits (22), Expect = 0.047
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 810 cgacgaggagaacgacgaagacgaag 835
|||||||||||||||||| |||||||
Sbjct: 310 cgacgaggagaacgacgacgacgaag 335
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 44.1 bits (22), Expect = 0.047
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 810 cgacgaggagaacgacgaagacgaag 835
|||||||||||||||||| |||||||
Sbjct: 18008059 cgacgaggagaacgacgacgacgaag 18008084
Score = 42.1 bits (21), Expect = 0.19
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 126 gcggcgctgagcacggcgctgttcaacgacggc 158
|||||| | |||||||| |||||||||||||||
Sbjct: 700949 gcggcgttaagcacggccctgttcaacgacggc 700981
>emb|AJ595013.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
409G03, genomic survey sequence
Length = 694
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 595 aggtcaccgccagcgacggccgcac 619
|||||||| ||||||||||||||||
Sbjct: 541 aggtcaccaccagcgacggccgcac 517
>gb|AI999398.1|AI999398 701555702 A. thaliana, Columbia Col-0, rosette-3 Arabidopsis
thaliana cDNA clone 701555702, mRNA sequence
Length = 587
Score = 42.1 bits (21), Expect = 0.19
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 595 aggtcaccgccagcgacggccgcac 619
|||||||| ||||||||||||||||
Sbjct: 468 aggtcaccaccagcgacggccgcac 444
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 311,914
Number of Sequences: 1013581
Number of extensions: 311914
Number of successful extensions: 25395
Number of sequences better than 0.5: 67
Number of HSP's better than 0.5 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24226
Number of HSP's gapped (non-prelim): 1168
length of query: 1022
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1002
effective length of database: 888,669,252
effective search space: 890446590504
effective search space used: 890446590504
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)