BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665525.2.1
(620 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP596219.1|BP596219 BP596219 RAFL15 Arabidopsis thaliana... 74 3e-011
gb|AY128376.1| Arabidopsis thaliana unknown protein (At1g53... 74 3e-011
gb|BT008831.1| Arabidopsis thaliana At1g53290 mRNA, complet... 74 3e-011
emb|BX818399.1|CNS0AAJ6 Arabidopsis thaliana Full-length cD... 74 3e-011
emb|BX818271.1|CNS0AEK9 Arabidopsis thaliana Full-length cD... 74 3e-011
ref|NM_104207.2| Arabidopsis thaliana transferase, transfer... 74 3e-011
gb|AY070398.1| Arabidopsis thaliana putative galactosyltran... 58 2e-006
gb|AY133728.1| Arabidopsis thaliana clone U19626 putative g... 58 2e-006
emb|BX823512.1|CNS0A6KQ Arabidopsis thaliana Full-length cD... 58 2e-006
emb|BX824144.1|CNS0A6RK Arabidopsis thaliana Full-length cD... 58 2e-006
ref|NM_112358.3| Arabidopsis thaliana transferase, transfer... 58 2e-006
emb|AL953547.1| Arabidopsis thaliana T-DNA flanking sequenc... 52 1e-004
gb|AV820584.1|AV820584 AV820584 RAFL11 Arabidopsis thaliana... 52 1e-004
gb|AC008007.7|AC008007 Genomic sequence for Arabidopsis tha... 52 1e-004
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 52 1e-004
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 52 1e-004
emb|BX820892.1|CNS0A83O Arabidopsis thaliana Full-length cD... 50 5e-004
emb|BX818880.1|CNS0A9Q5 Arabidopsis thaliana Full-length cD... 50 5e-004
gb|BT015330.1| Arabidopsis thaliana At2g26100 gene, complet... 50 5e-004
gb|BT015706.1| Arabidopsis thaliana At2g26100 gene, complet... 50 5e-004
ref|NM_128168.3| Arabidopsis thaliana transferase, transfer... 50 5e-004
gb|AV533284.1|AV533284 AV533284 Arabidopsis thaliana flower... 46 0.007
gb|AV535427.1|AV535427 AV535427 Arabidopsis thaliana flower... 46 0.007
dbj|AP000370.1| Arabidopsis thaliana genomic DNA, chromosom... 46 0.007
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 46 0.007
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 46 0.007
gb|AI995369.1|AI995369 701673573 A. thaliana, Columbia Col-... 44 0.028
gb|AV818851.1|AV818851 AV818851 RAFL11 Arabidopsis thaliana... 44 0.028
gb|AC004747.3| Arabidopsis thaliana chromosome 2 clone T19L... 44 0.028
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 44 0.028
gb|BP585823.1|BP585823 BP585823 RAFL15 Arabidopsis thaliana... 42 0.11
>gb|BP596219.1|BP596219 BP596219 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-33-F20 3',
mRNA sequence
Length = 440
Score = 73.8 bits (37), Expect = 3e-011
Identities = 124/153 (81%)
Strand = Plus / Plus
Query: 383 gttctcatggttgacgttcatagcaagcatccacgatccaattgtaacgtcctagatact 442
|||||| |||||||| ||||| || |||||||||| || ||||| ||||||| | | |
Sbjct: 264 gttctcgtggttgacattcattgccagcatccacgcacctattgttacgtcctcgttgtt 323
Query: 443 aaacatacggaaactgttgttcctcaaagcaaccaagctagccaccacgtcagctgataa 502
|||||| | ||||||||| ||| | | |||||||| || || ||||| ||||| || |
Sbjct: 324 aaacatcctgaaactgttattcttgagggcaaccaaactggctaccacatcagcagagag 383
Query: 503 agcataaattggcccatatgcatgaagaaagta 535
||||||||| || ||||| ||||||||||||||
Sbjct: 384 agcataaatcgggccataagcatgaagaaagta 416
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaaga 349
||||||||||| || ||||||||||||||||| |||||
Sbjct: 193 cctgagcatttagggatgtcccaaacagcaacagaaga 230
>gb|AY128376.1| Arabidopsis thaliana unknown protein (At1g53290) mRNA, complete cds
Length = 1172
Score = 73.8 bits (37), Expect = 3e-011
Identities = 124/153 (81%)
Strand = Plus / Minus
Query: 383 gttctcatggttgacgttcatagcaagcatccacgatccaattgtaacgtcctagatact 442
|||||| |||||||| ||||| || |||||||||| || ||||| ||||||| | | |
Sbjct: 882 gttctcgtggttgacattcattgccagcatccacgcacctattgttacgtcctcgttgtt 823
Query: 443 aaacatacggaaactgttgttcctcaaagcaaccaagctagccaccacgtcagctgataa 502
|||||| | ||||||||| ||| | | |||||||| || || ||||| ||||| || |
Sbjct: 822 aaacatcctgaaactgttattcttgagggcaaccaaactggctaccacatcagcagagag 763
Query: 503 agcataaattggcccatatgcatgaagaaagta 535
||||||||| || ||||| ||||||||||||||
Sbjct: 762 agcataaatcgggccataagcatgaagaaagta 730
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaaga 349
||||||||||| || ||||||||||||||||| |||||
Sbjct: 953 cctgagcatttagggatgtcccaaacagcaacagaaga 916
Score = 42.1 bits (21), Expect = 0.11
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 564 tcataccatttcaacttaggatcagtaaaaacaggccccttcttcatgcatcc 616
||||||||||| | ||||||||| || ||||| || ||||| |||| ||||||
Sbjct: 701 tcataccatttgagcttaggatctgtgaaaaccggaccctttttcaagcatcc 649
>gb|BT008831.1| Arabidopsis thaliana At1g53290 mRNA, complete cds
Length = 1038
Score = 73.8 bits (37), Expect = 3e-011
Identities = 124/153 (81%)
Strand = Plus / Minus
Query: 383 gttctcatggttgacgttcatagcaagcatccacgatccaattgtaacgtcctagatact 442
|||||| |||||||| ||||| || |||||||||| || ||||| ||||||| | | |
Sbjct: 879 gttctcgtggttgacattcattgccagcatccacgcacctattgttacgtcctcgttgtt 820
Query: 443 aaacatacggaaactgttgttcctcaaagcaaccaagctagccaccacgtcagctgataa 502
|||||| | ||||||||| ||| | | |||||||| || || ||||| ||||| || |
Sbjct: 819 aaacatcctgaaactgttattcttgagggcaaccaaactggctaccacatcagcagagag 760
Query: 503 agcataaattggcccatatgcatgaagaaagta 535
||||||||| || ||||| ||||||||||||||
Sbjct: 759 agcataaatcgggccataagcatgaagaaagta 727
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaaga 349
||||||||||| || ||||||||||||||||| |||||
Sbjct: 950 cctgagcatttagggatgtcccaaacagcaacagaaga 913
Score = 42.1 bits (21), Expect = 0.11
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 564 tcataccatttcaacttaggatcagtaaaaacaggccccttcttcatgcatcc 616
||||||||||| | ||||||||| || ||||| || ||||| |||| ||||||
Sbjct: 698 tcataccatttgagcttaggatctgtgaaaaccggaccctttttcaagcatcc 646
>emb|BX818399.1|CNS0AAJ6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL77ZA05 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1045
Score = 73.8 bits (37), Expect = 3e-011
Identities = 124/153 (81%)
Strand = Plus / Minus
Query: 383 gttctcatggttgacgttcatagcaagcatccacgatccaattgtaacgtcctagatact 442
|||||| |||||||| ||||| || |||||||||| || ||||| ||||||| | | |
Sbjct: 821 gttctcgtggttgacattcattgccagcatccacgcacctattgttacgtcctcgttgtt 762
Query: 443 aaacatacggaaactgttgttcctcaaagcaaccaagctagccaccacgtcagctgataa 502
|||||| | ||||||||| ||| | | |||||||| || || ||||| ||||| || |
Sbjct: 761 aaacatcctgaaactgttattcttgagggcaaccaaactggctaccacatcagcagagag 702
Query: 503 agcataaattggcccatatgcatgaagaaagta 535
||||||||| || ||||| ||||||||||||||
Sbjct: 701 agcataaatcgggccataagcatgaagaaagta 669
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaaga 349
||||||||||| || ||||||||||||||||| |||||
Sbjct: 892 cctgagcatttagggatgtcccaaacagcaacagaaga 855
Score = 42.1 bits (21), Expect = 0.11
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 564 tcataccatttcaacttaggatcagtaaaaacaggccccttcttcatgcatcc 616
||||||||||| | ||||||||| || ||||| || ||||| |||| ||||||
Sbjct: 640 tcataccatttgagcttaggatctgtgaaaaccggaccctttttcaagcatcc 588
>emb|BX818271.1|CNS0AEK9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL6ZG03 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1152
Score = 73.8 bits (37), Expect = 3e-011
Identities = 124/153 (81%)
Strand = Plus / Minus
Query: 383 gttctcatggttgacgttcatagcaagcatccacgatccaattgtaacgtcctagatact 442
|||||| |||||||| ||||| || |||||||||| || ||||| ||||||| | | |
Sbjct: 923 gttctcgtggttgacattcattgccagcatccacgcacctattgttacgtcctcgttgtt 864
Query: 443 aaacatacggaaactgttgttcctcaaagcaaccaagctagccaccacgtcagctgataa 502
|||||| | ||||||||| ||| | | |||||||| || || ||||| ||||| || |
Sbjct: 863 aaacatcctgaaactgttattcttgagggcaaccaaactggctaccacatcagcagagag 804
Query: 503 agcataaattggcccatatgcatgaagaaagta 535
||||||||| || ||||| ||||||||||||||
Sbjct: 803 agcataaatcgggccataagcatgaagaaagta 771
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaaga 349
||||||||||| || ||||||||||||||||| |||||
Sbjct: 994 cctgagcatttagggatgtcccaaacagcaacagaaga 957
>ref|NM_104207.2| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT1G53290 mRNA,
complete cds
Length = 1331
Score = 73.8 bits (37), Expect = 3e-011
Identities = 124/153 (81%)
Strand = Plus / Minus
Query: 383 gttctcatggttgacgttcatagcaagcatccacgatccaattgtaacgtcctagatact 442
|||||| |||||||| ||||| || |||||||||| || ||||| ||||||| | | |
Sbjct: 933 gttctcgtggttgacattcattgccagcatccacgcacctattgttacgtcctcgttgtt 874
Query: 443 aaacatacggaaactgttgttcctcaaagcaaccaagctagccaccacgtcagctgataa 502
|||||| | ||||||||| ||| | | |||||||| || || ||||| ||||| || |
Sbjct: 873 aaacatcctgaaactgttattcttgagggcaaccaaactggctaccacatcagcagagag 814
Query: 503 agcataaattggcccatatgcatgaagaaagta 535
||||||||| || ||||| ||||||||||||||
Sbjct: 813 agcataaatcgggccataagcatgaagaaagta 781
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaaga 349
||||||||||| || ||||||||||||||||| |||||
Sbjct: 1004 cctgagcatttagggatgtcccaaacagcaacagaaga 967
Score = 42.1 bits (21), Expect = 0.11
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 564 tcataccatttcaacttaggatcagtaaaaacaggccccttcttcatgcatcc 616
||||||||||| | ||||||||| || ||||| || ||||| |||| ||||||
Sbjct: 752 tcataccatttgagcttaggatctgtgaaaaccggaccctttttcaagcatcc 700
>gb|AY070398.1| Arabidopsis thaliana putative galactosyltransferase (At3g14960)
mRNA, complete cds
Length = 1429
Score = 58.0 bits (29), Expect = 2e-006
Identities = 122/153 (79%)
Strand = Plus / Minus
Query: 383 gttctcatggttgacgttcatagcaagcatccacgatccaattgtaacgtcctagatact 442
|||||| ||||| |||||||| || |||||||||| || || || ||||||| | ||
Sbjct: 929 gttctcgtggttaacgttcattgccagcatccacgcacctatggtcacgtcctcattgct 870
Query: 443 aaacatacggaaactgttgttcctcaaagcaaccaagctagccaccacgtcagctgataa 502
|||||| | ||||||||||||| | | |||||||| |||| || || ||||| || |
Sbjct: 869 aaacatcctgaaactgttgttcttgagggcaaccaaactagtgacaacatcagcagaaag 810
Query: 503 agcataaattggcccatatgcatgaagaaagta 535
|||||| || || ||||| ||||||||||||||
Sbjct: 809 agcatatatggggccataagcatgaagaaagta 777
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaa 342
|||||||||||||| || |||||||||||||
Sbjct: 1000 cctgagcattttggtatatcccaaacagcaa 970
>gb|AY133728.1| Arabidopsis thaliana clone U19626 putative galactosyltransferase
(At3g14960) mRNA, complete cds
Length = 1063
Score = 58.0 bits (29), Expect = 2e-006
Identities = 122/153 (79%)
Strand = Plus / Minus
Query: 383 gttctcatggttgacgttcatagcaagcatccacgatccaattgtaacgtcctagatact 442
|||||| ||||| |||||||| || |||||||||| || || || ||||||| | ||
Sbjct: 873 gttctcgtggttaacgttcattgccagcatccacgcacctatggtcacgtcctcattgct 814
Query: 443 aaacatacggaaactgttgttcctcaaagcaaccaagctagccaccacgtcagctgataa 502
|||||| | ||||||||||||| | | |||||||| |||| || || ||||| || |
Sbjct: 813 aaacatcctgaaactgttgttcttgagggcaaccaaactagtgacaacatcagcagaaag 754
Query: 503 agcataaattggcccatatgcatgaagaaagta 535
|||||| || || ||||| ||||||||||||||
Sbjct: 753 agcatatatggggccataagcatgaagaaagta 721
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaa 342
|||||||||||||| || |||||||||||||
Sbjct: 944 cctgagcattttggtatatcccaaacagcaa 914
>emb|BX823512.1|CNS0A6KQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS46ZB01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1383
Score = 58.0 bits (29), Expect = 2e-006
Identities = 122/153 (79%)
Strand = Plus / Minus
Query: 383 gttctcatggttgacgttcatagcaagcatccacgatccaattgtaacgtcctagatact 442
|||||| ||||| |||||||| || |||||||||| || || || ||||||| | ||
Sbjct: 889 gttctcgtggttaacgttcattgccagcatccacgcacctatggtcacgtcctcattgct 830
Query: 443 aaacatacggaaactgttgttcctcaaagcaaccaagctagccaccacgtcagctgataa 502
|||||| | ||||||||||||| | | |||||||| |||| || || ||||| || |
Sbjct: 829 aaacatcctgaaactgttgttcttgagggcaaccaaactagtgacaacatcagcagaaag 770
Query: 503 agcataaattggcccatatgcatgaagaaagta 535
|||||| || || ||||| ||||||||||||||
Sbjct: 769 agcatatatggggccataagcatgaagaaagta 737
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaa 342
|||||||||||||| || |||||||||||||
Sbjct: 960 cctgagcattttggtatatcccaaacagcaa 930
>emb|BX824144.1|CNS0A6RK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH25ZH09 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1395
Score = 58.0 bits (29), Expect = 2e-006
Identities = 122/153 (79%)
Strand = Plus / Minus
Query: 383 gttctcatggttgacgttcatagcaagcatccacgatccaattgtaacgtcctagatact 442
|||||| ||||| |||||||| || |||||||||| || || || ||||||| | ||
Sbjct: 918 gttctcgtggttaacgttcattgccagcatccacgcacctatggtcacgtcctcattgct 859
Query: 443 aaacatacggaaactgttgttcctcaaagcaaccaagctagccaccacgtcagctgataa 502
|||||| | ||||||||||||| | | |||||||| |||| || || ||||| || |
Sbjct: 858 aaacatcctgaaactgttgttcttgagggcaaccaaactagtaacaacatcagcagaaag 799
Query: 503 agcataaattggcccatatgcatgaagaaagta 535
|||||| || || ||||| ||||||||||||||
Sbjct: 798 agcatatatggggccataagcatgaagaaagta 766
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaa 342
|||||||||||||| || |||||||||||||
Sbjct: 989 cctgagcattttggtatatcccaaacagcaa 959
>ref|NM_112358.3| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT3G14960 mRNA,
complete cds
Length = 1444
Score = 58.0 bits (29), Expect = 2e-006
Identities = 122/153 (79%)
Strand = Plus / Minus
Query: 383 gttctcatggttgacgttcatagcaagcatccacgatccaattgtaacgtcctagatact 442
|||||| ||||| |||||||| || |||||||||| || || || ||||||| | ||
Sbjct: 929 gttctcgtggttaacgttcattgccagcatccacgcacctatggtcacgtcctcattgct 870
Query: 443 aaacatacggaaactgttgttcctcaaagcaaccaagctagccaccacgtcagctgataa 502
|||||| | ||||||||||||| | | |||||||| |||| || || ||||| || |
Sbjct: 869 aaacatcctgaaactgttgttcttgagggcaaccaaactagtgacaacatcagcagaaag 810
Query: 503 agcataaattggcccatatgcatgaagaaagta 535
|||||| || || ||||| ||||||||||||||
Sbjct: 809 agcatatatggggccataagcatgaagaaagta 777
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaa 342
|||||||||||||| || |||||||||||||
Sbjct: 1000 cctgagcattttggtatatcccaaacagcaa 970
>emb|AL953547.1| Arabidopsis thaliana T-DNA flanking sequence GK-352B03-016361,
genomic survey sequence
Length = 594
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaaga 349
||||||||||| || ||||||||||||||||| |||||
Sbjct: 204 cctgagcatttagggatgtcccaaacagcaacagaaga 241
Score = 50.1 bits (25), Expect = 5e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 471 gcaaccaagctagccaccacgtcagctgataaagcataaattggcccatatgcatgaaga 530
|||||||| || || ||||| ||||| || | ||||||||| || ||||| |||||||||
Sbjct: 448 gcaaccaaactggctaccacatcagcagagagagcataaatcgggccataagcatgaaga 507
Query: 531 aagta 535
|||||
Sbjct: 508 aagta 512
>gb|AV820584.1|AV820584 AV820584 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-11-D13 3',
mRNA sequence
Length = 419
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaaga 349
||||||||||| || ||||||||||||||||| |||||
Sbjct: 220 cctgagcatttagggatgtcccaaacagcaacagaaga 257
>gb|AC008007.7|AC008007 Genomic sequence for Arabidopsis thaliana BAC F12M16 from chromosome I,
complete sequence
Length = 130235
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaaga 349
||||||||||| || ||||||||||||||||| |||||
Sbjct: 71962 cctgagcatttagggatgtcccaaacagcaacagaaga 71925
Score = 50.1 bits (25), Expect = 5e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 471 gcaaccaagctagccaccacgtcagctgataaagcataaattggcccatatgcatgaaga 530
|||||||| || || ||||| ||||| || | ||||||||| || ||||| |||||||||
Sbjct: 71718 gcaaccaaactggctaccacatcagcagagagagcataaatcgggccataagcatgaaga 71659
Query: 531 aagta 535
|||||
Sbjct: 71658 aagta 71654
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaaga 349
||||||||||| || ||||||||||||||||| |||||
Sbjct: 4232320 cctgagcatttagggatgtcccaaacagcaacagaaga 4232283
Score = 50.1 bits (25), Expect = 5e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 471 gcaaccaagctagccaccacgtcagctgataaagcataaattggcccatatgcatgaaga 530
|||||||| || || ||||| ||||| || | ||||||||| || ||||| |||||||||
Sbjct: 4232076 gcaaccaaactggctaccacatcagcagagagagcataaatcgggccataagcatgaaga 4232017
Query: 531 aagta 535
|||||
Sbjct: 4232016 aagta 4232012
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaaga 349
||||||||||| || ||||||||||||||||| |||||
Sbjct: 19876725 cctgagcatttagggatgtcccaaacagcaacagaaga 19876688
Score = 50.1 bits (25), Expect = 5e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 471 gcaaccaagctagccaccacgtcagctgataaagcataaattggcccatatgcatgaaga 530
|||||||| || || ||||| ||||| || | ||||||||| || ||||| |||||||||
Sbjct: 19876481 gcaaccaaactggctaccacatcagcagagagagcataaatcgggccataagcatgaaga 19876422
Query: 531 aagta 535
|||||
Sbjct: 19876421 aagta 19876417
>emb|BX820892.1|CNS0A83O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH79ZF09 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1502
Score = 50.1 bits (25), Expect = 5e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 309 agccctgagcattttggaatgtcccaaac 337
|||||||||||||| ||||||||||||||
Sbjct: 1104 agccctgagcatttgggaatgtcccaaac 1076
>emb|BX818880.1|CNS0A9Q5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB22ZG10 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1439
Score = 50.1 bits (25), Expect = 5e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 309 agccctgagcattttggaatgtcccaaac 337
|||||||||||||| ||||||||||||||
Sbjct: 1077 agccctgagcatttgggaatgtcccaaac 1049
>gb|BT015330.1| Arabidopsis thaliana At2g26100 gene, complete cds
Length = 1246
Score = 50.1 bits (25), Expect = 5e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 309 agccctgagcattttggaatgtcccaaac 337
|||||||||||||| ||||||||||||||
Sbjct: 1056 agccctgagcatttgggaatgtcccaaac 1028
>gb|BT015706.1| Arabidopsis thaliana At2g26100 gene, complete cds
Length = 1116
Score = 50.1 bits (25), Expect = 5e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 309 agccctgagcattttggaatgtcccaaac 337
|||||||||||||| ||||||||||||||
Sbjct: 1025 agccctgagcatttgggaatgtcccaaac 997
>ref|NM_128168.3| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT2G26100 mRNA,
complete cds
Length = 1498
Score = 50.1 bits (25), Expect = 5e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 309 agccctgagcattttggaatgtcccaaac 337
|||||||||||||| ||||||||||||||
Sbjct: 1104 agccctgagcatttgggaatgtcccaaac 1076
>gb|AV533284.1|AV533284 AV533284 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB059a10F 3', mRNA sequence
Length = 482
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 312 cctgagcattttggaatgtcccaaacagcaa 342
|||||||||||||| || |||||||||||||
Sbjct: 426 cctgagcattttggtatatcccaaacagcaa 456
>gb|AV535427.1|AV535427 AV535427 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB096b09F 3', mRNA sequence
Length = 545
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 312 cctgagcattttggaatgtcccaaacagcaa 342
|||||||||||||| || |||||||||||||
Sbjct: 445 cctgagcattttggtatatcccaaacagcaa 475
>dbj|AP000370.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K15M2
Length = 79279
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 312 cctgagcattttggaatgtcccaaacagcaa 342
|||||||||||||| || |||||||||||||
Sbjct: 32479 cctgagcattttggtatatcccaaacagcaa 32509
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 312 cctgagcattttggaatgtcccaaacagcaa 342
|||||||||||||| || |||||||||||||
Sbjct: 5025971 cctgagcattttggtatatcccaaacagcaa 5026001
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 312 cctgagcattttggaatgtcccaaacagcaa 342
|||||||||||||| || |||||||||||||
Sbjct: 5036454 cctgagcattttggtatatcccaaacagcaa 5036484
>gb|AI995369.1|AI995369 701673573 A. thaliana, Columbia Col-0, inflorescence-1 Arabidopsis
thaliana cDNA clone 701673573, mRNA sequence
Length = 557
Score = 44.1 bits (22), Expect = 0.028
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 309 agccctgagcattttggaatgtcccaaac 337
|||||||||| ||| ||||||||||||||
Sbjct: 372 agccctgagcntttgggaatgtcccaaac 400
>gb|AV818851.1|AV818851 AV818851 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-01-A09 3',
mRNA sequence
Length = 427
Score = 44.1 bits (22), Expect = 0.028
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 312 cctgagcattttggaatgtcccaaacagcaactgaaga 349
||||||||||| || || |||||||||||||| |||||
Sbjct: 220 cctgagcatttagggatttcccaaacagcaacagaaga 257
>gb|AC004747.3| Arabidopsis thaliana chromosome 2 clone T19L18 map B68, complete
sequence
Length = 87080
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 312 cctgagcattttggaatgtcccaaac 337
||||||||||| ||||||||||||||
Sbjct: 28107 cctgagcatttgggaatgtcccaaac 28082
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 312 cctgagcattttggaatgtcccaaac 337
||||||||||| ||||||||||||||
Sbjct: 11123466 cctgagcatttgggaatgtcccaaac 11123491
>gb|BP585823.1|BP585823 BP585823 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-04-A18 3',
mRNA sequence
Length = 445
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 312 cctgagcattttggaatgtcccaaacagc 340
||||||||||| || ||||||||||||||
Sbjct: 193 cctgagcatttagggatgtcccaaacagc 221
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 266,523
Number of Sequences: 1013581
Number of extensions: 266523
Number of successful extensions: 18556
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17940
Number of HSP's gapped (non-prelim): 616
length of query: 620
length of database: 908,940,872
effective HSP length: 20
effective length of query: 600
effective length of database: 888,669,252
effective search space: 533201551200
effective search space used: 533201551200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)