BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665490.2.1
(1289 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU236531.1|AU236531 AU236531 RAFL15 Arabidopsis thaliana... 50 0.001
gb|AY086626.1| Arabidopsis thaliana clone 26375 mRNA, compl... 50 0.001
gb|BT008612.1| Arabidopsis thaliana clone RAFL15-07-B13 (R2... 50 0.001
emb|X98804.1|ATATP418A A.thaliana mRNA for peroxidase ATP18a 50 0.001
ref|NM_103577.1| Arabidopsis thaliana peroxidase AT1G44970 ... 50 0.001
emb|AL093888.1|CNS00WPU Arabidopsis thaliana genome survey ... 42 0.24
gb|AV539015.1|AV539015 AV539015 Arabidopsis thaliana roots ... 42 0.24
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 42 0.24
gb|AC010657.3|AC010657 Genomic sequence for Arabidopsis tha... 42 0.24
gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsi... 42 0.24
gb|AC020576.2|T12C22 Sequence of BAC T12C22 from Arabidopsi... 42 0.24
gb|AC007915.3|AC007915 Genomic sequence for Arabidopsis tha... 42 0.24
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.24
ref|NM_101321.2| Arabidopsis thaliana peroxidase AT1G14540 ... 42 0.24
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.24
>gb|AU236531.1|AU236531 AU236531 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-07-B13 5',
mRNA sequence
Length = 644
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 985 cagccctgcacgaagcagtcgtggaagtg 1013
|||||||| ||||||||||||||||||||
Sbjct: 300 cagccctgaacgaagcagtcgtggaagtg 272
>gb|AY086626.1| Arabidopsis thaliana clone 26375 mRNA, complete sequence
Length = 1186
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 985 cagccctgcacgaagcagtcgtggaagtg 1013
|||||||| ||||||||||||||||||||
Sbjct: 300 cagccctgaacgaagcagtcgtggaagtg 272
>gb|BT008612.1| Arabidopsis thaliana clone RAFL15-07-B13 (R20733) putative peroxidase
(At1g44970) mRNA, complete cds
Length = 1202
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 985 cagccctgcacgaagcagtcgtggaagtg 1013
|||||||| ||||||||||||||||||||
Sbjct: 300 cagccctgaacgaagcagtcgtggaagtg 272
>emb|X98804.1|ATATP418A A.thaliana mRNA for peroxidase ATP18a
Length = 1193
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 985 cagccctgcacgaagcagtcgtggaagtg 1013
|||||||| ||||||||||||||||||||
Sbjct: 287 cagccctgaacgaagcagtcgtggaagtg 259
>ref|NM_103577.1| Arabidopsis thaliana peroxidase AT1G44970 mRNA, complete cds
Length = 1187
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 985 cagccctgcacgaagcagtcgtggaagtg 1013
|||||||| ||||||||||||||||||||
Sbjct: 300 cagccctgaacgaagcagtcgtggaagtg 272
>emb|AL093888.1|CNS00WPU Arabidopsis thaliana genome survey sequence T7 end of BAC T12C22 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 660
Score = 42.1 bits (21), Expect = 0.24
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 989 cctgcacgaagcagtcgtggaagtg 1013
|||| ||||||||||||||||||||
Sbjct: 209 cctgaacgaagcagtcgtggaagtg 233
>gb|AV539015.1|AV539015 AV539015 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ125f04F 3', mRNA sequence
Length = 539
Score = 42.1 bits (21), Expect = 0.24
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 969 caggatggaggcgtcgcagccctgcacgaagcagtcgtggaagtg 1013
||||||||| || || ||||| | ||||||||||||||||||||
Sbjct: 256 caggatggatgcatcacagccattgacgaagcagtcgtggaagtg 212
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 42.1 bits (21), Expect = 0.24
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 994 acgaagcagtcgtggaagtggagccggat 1022
||||||||||||||||| ||||| |||||
Sbjct: 4975226 acgaagcagtcgtggaaatggagacggat 4975254
>gb|AC010657.3|AC010657 Genomic sequence for Arabidopsis thaliana BAC T5E21 from chromosome I,
complete sequence
Length = 83351
Score = 42.1 bits (21), Expect = 0.24
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 994 acgaagcagtcgtggaagtggagccggat 1022
||||||||||||||||| ||||| |||||
Sbjct: 12879 acgaagcagtcgtggaaatggagacggat 12907
>gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 111686
Score = 42.1 bits (21), Expect = 0.24
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 994 acgaagcagtcgtggaagtggagccggat 1022
||||||||||||||||| ||||| |||||
Sbjct: 106486 acgaagcagtcgtggaaatggagacggat 106514
>gb|AC020576.2|T12C22 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 115421
Score = 42.1 bits (21), Expect = 0.24
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 989 cctgcacgaagcagtcgtggaagtg 1013
|||| ||||||||||||||||||||
Sbjct: 115207 cctgaacgaagcagtcgtggaagtg 115183
>gb|AC007915.3|AC007915 Genomic sequence for Arabidopsis thaliana BAC F27F5 from chromosome I,
complete sequence
Length = 137336
Score = 42.1 bits (21), Expect = 0.24
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 989 cctgcacgaagcagtcgtggaagtg 1013
|||| ||||||||||||||||||||
Sbjct: 28467 cctgaacgaagcagtcgtggaagtg 28443
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 42.1 bits (21), Expect = 0.24
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 989 cctgcacgaagcagtcgtggaagtg 1013
|||| ||||||||||||||||||||
Sbjct: 1418578 cctgaacgaagcagtcgtggaagtg 1418554
>ref|NM_101321.2| Arabidopsis thaliana peroxidase AT1G14540 mRNA, complete cds
Length = 1114
Score = 42.1 bits (21), Expect = 0.24
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 994 acgaagcagtcgtggaagtggagccggat 1022
||||||||||||||||| ||||| |||||
Sbjct: 194 acgaagcagtcgtggaaatggagacggat 166
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 42.1 bits (21), Expect = 0.24
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 989 cctgcacgaagcagtcgtggaagtg 1013
|||| ||||||||||||||||||||
Sbjct: 17004947 cctgaacgaagcagtcgtggaagtg 17004923
Score = 42.1 bits (21), Expect = 0.24
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 994 acgaagcagtcgtggaagtggagccggat 1022
||||||||||||||||| ||||| |||||
Sbjct: 4975402 acgaagcagtcgtggaaatggagacggat 4975430
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 310,928
Number of Sequences: 1013581
Number of extensions: 310928
Number of successful extensions: 23572
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23211
Number of HSP's gapped (non-prelim): 361
length of query: 1289
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1269
effective length of database: 888,669,252
effective search space: 1127721280788
effective search space used: 1127721280788
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)