BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665460.2.1
(649 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BH170855.1|BH170855 SALK_003445 Arabidopsis thaliana TDN... 42 0.12
emb|AL941499.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.12
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 42 0.12
gb|AC064879.3|AC064879 Arabidopsis thaliana chromosome I BA... 42 0.12
gb|BT011721.1| Arabidopsis thaliana At1g02405 gene, complet... 42 0.12
dbj|AK221340.1| Arabidopsis thaliana mRNA for putative prot... 42 0.12
ref|NM_148428.1| Arabidopsis thaliana unknown protein AT1G0... 42 0.12
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.12
gb|CC883835.1|CC883835 SALK_096500.45.35.x Arabidopsis thal... 40 0.46
gb|AV825731.1|AV825731 AV825731 RAFL7 Arabidopsis thaliana ... 40 0.46
gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23 40 0.46
gb|AY062495.1| Arabidopsis thaliana Unknown protein (At4g00... 40 0.46
emb|BX827000.1|CNS0A2CZ Arabidopsis thaliana Full-length cD... 40 0.46
emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, shor... 40 0.46
emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome... 40 0.46
ref|NM_116296.3| Arabidopsis thaliana ATP binding / kinase/... 40 0.46
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 40 0.46
>gb|BH170855.1|BH170855 SALK_003445 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_003445, DNA sequence
Length = 467
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 411 cgccacctccacctccaccta 431
|||||||||||||||||||||
Sbjct: 426 cgccacctccacctccaccta 446
>emb|AL941499.1| Arabidopsis thaliana T-DNA flanking sequence GK-258C09-014922,
genomic survey sequence
Length = 407
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 411 cgccacctccacctccaccta 431
|||||||||||||||||||||
Sbjct: 25 cgccacctccacctccaccta 45
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 411 cgccacctccacctccaccta 431
|||||||||||||||||||||
Sbjct: 490304 cgccacctccacctccaccta 490284
>gb|AC064879.3|AC064879 Arabidopsis thaliana chromosome I BAC T6A9 genomic sequence, complete
sequence
Length = 109180
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 411 cgccacctccacctccaccta 431
|||||||||||||||||||||
Sbjct: 85260 cgccacctccacctccaccta 85240
>gb|BT011721.1| Arabidopsis thaliana At1g02405 gene, complete cds
Length = 405
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 411 cgccacctccacctccaccta 431
|||||||||||||||||||||
Sbjct: 254 cgccacctccacctccaccta 274
>dbj|AK221340.1| Arabidopsis thaliana mRNA for putative protein, complete cds,
clone: RAFL25-20-C07
Length = 532
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 411 cgccacctccacctccaccta 431
|||||||||||||||||||||
Sbjct: 262 cgccacctccacctccaccta 282
>ref|NM_148428.1| Arabidopsis thaliana unknown protein AT1G02405 mRNA, complete cds
Length = 405
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 411 cgccacctccacctccaccta 431
|||||||||||||||||||||
Sbjct: 254 cgccacctccacctccaccta 274
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 411 cgccacctccacctccaccta 431
|||||||||||||||||||||
Sbjct: 490244 cgccacctccacctccaccta 490224
>gb|CC883835.1|CC883835 SALK_096500.45.35.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_096500.45.35.x,
DNA sequence
Length = 446
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 511 tcaaaatcgaaagggtaaat 530
||||||||||||||||||||
Sbjct: 112 tcaaaatcgaaagggtaaat 131
>gb|AV825731.1|AV825731 AV825731 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-13-K15 5',
mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 511 tcaaaatcgaaagggtaaat 530
||||||||||||||||||||
Sbjct: 522 tcaaaatcgaaagggtaaat 503
>gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23
Length = 91849
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 511 tcaaaatcgaaagggtaaat 530
||||||||||||||||||||
Sbjct: 78380 tcaaaatcgaaagggtaaat 78361
>gb|AY062495.1| Arabidopsis thaliana Unknown protein (At4g00710; F6N23.9) mRNA,
complete cds
Length = 2446
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 511 tcaaaatcgaaagggtaaat 530
||||||||||||||||||||
Sbjct: 532 tcaaaatcgaaagggtaaat 513
>emb|BX827000.1|CNS0A2CZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB85ZC05 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 2182
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 511 tcaaaatcgaaagggtaaat 530
||||||||||||||||||||
Sbjct: 311 tcaaaatcgaaagggtaaat 292
>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
Length = 3052119
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 511 tcaaaatcgaaagggtaaat 530
||||||||||||||||||||
Sbjct: 289373 tcaaaatcgaaagggtaaat 289354
>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2
Length = 197975
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 511 tcaaaatcgaaagggtaaat 530
||||||||||||||||||||
Sbjct: 97254 tcaaaatcgaaagggtaaat 97235
>ref|NM_116296.3| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein
serine/threonine kinase/ protein-tyrosine kinase
AT4G00710 mRNA, complete cds
Length = 2495
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 511 tcaaaatcgaaagggtaaat 530
||||||||||||||||||||
Sbjct: 520 tcaaaatcgaaagggtaaat 501
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 511 tcaaaatcgaaagggtaaat 530
||||||||||||||||||||
Sbjct: 290567 tcaaaatcgaaagggtaaat 290548
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 229,694
Number of Sequences: 1013581
Number of extensions: 229694
Number of successful extensions: 19016
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18654
Number of HSP's gapped (non-prelim): 362
length of query: 649
length of database: 908,940,872
effective HSP length: 20
effective length of query: 629
effective length of database: 888,669,252
effective search space: 558972959508
effective search space used: 558972959508
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)