BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665414.2.1
(3330 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF030864.1|AF030864 Arabidopsis thaliana nonphototropic ... 157 2e-035
gb|AF360218.1| Arabidopsis thaliana putative nonphototropic... 157 2e-035
gb|AY040062.1| Arabidopsis thaliana putative nonphototropic... 157 2e-035
emb|AX507403.1| Sequence 2098 from Patent WO0216655 157 2e-035
emb|CQ804312.1| Sequence 723 from Patent WO2004035798 157 2e-035
dbj|AK221466.1| Arabidopsis thaliana mRNA for nonphototropi... 157 2e-035
ref|NM_114447.2| Arabidopsis thaliana PHOT1; kinase AT3G457... 157 2e-035
ref|NM_001035737.1| Arabidopsis thaliana PHOT1; kinase AT3G... 157 2e-035
gb|AV523433.1|AV523433 AV523433 Arabidopsis thaliana aboveg... 109 3e-021
gb|CB264104.1|CB264104 90-E015023-035-004-D23-T7R MPIZ-ADIS... 94 2e-016
gb|CF651451.1|CF651451 10-E021110-013-001-C03-T7R MPIZ-ADIS... 94 2e-016
gb|AF053941.2|AF053941 Arabidopsis thaliana non phototropic... 94 2e-016
gb|AY093141.1| Arabidopsis thaliana unknown protein (At5g58... 94 2e-016
emb|AX507819.1| Sequence 2514 from Patent WO0216655 94 2e-016
gb|BT008901.1| Arabidopsis thaliana At5g58140 mRNA, complet... 94 2e-016
ref|NM_180879.1| Arabidopsis thaliana PHOT2 (NON PHOTOTROPI... 94 2e-016
ref|NM_180880.1| Arabidopsis thaliana PHOT2 (NON PHOTOTROPI... 94 2e-016
ref|NM_180881.1| Arabidopsis thaliana PHOT2 (NON PHOTOTROPI... 94 2e-016
ref|NM_125199.2| Arabidopsis thaliana PHOT2 (NON PHOTOTROPI... 94 2e-016
gb|AV523195.1|AV523195 AV523195 Arabidopsis thaliana aboveg... 74 2e-010
gb|BP779517.1|BP779517 BP779517 RAFL7 Arabidopsis thaliana ... 70 3e-009
gb|AI999585.1|AI999585 701556518 A. thaliana, Columbia Col-... 68 1e-008
dbj|AB019228.1| Arabidopsis thaliana genomic DNA, chromosom... 66 4e-008
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 66 4e-008
gb|CL465000.1|CL465000 SAIL_1232_C01.v1 SAIL Collection Ara... 60 3e-006
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 60 3e-006
emb|AL157735.2|ATT6D9 Arabidopsis thaliana DNA chromosome 3... 60 3e-006
emb|AL162459.2|ATF16L2 Arabidopsis thaliana DNA chromosome ... 60 3e-006
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 60 3e-006
gb|AV441447.1|AV441447 AV441447 Arabidopsis thaliana above-... 58 1e-005
gb|BX834773.1|BX834773 BX834773 Arabidopsis thaliana Hormon... 56 4e-005
gb|CB074322.1|CB074322 EST00836 Virulent Peronospora parasi... 54 2e-004
gb|U79744.1|ATU79744 Arabidopsis thaliana putative serine/t... 54 2e-004
gb|BX839532.1|BX839532 BX839532 Arabidopsis thaliana Adult ... 52 6e-004
dbj|AB024033.1| Arabidopsis thaliana genomic DNA, chromosom... 52 6e-004
gb|BT011689.1| Arabidopsis thaliana At3g12690 gene, complet... 52 6e-004
gb|BT020332.1| Arabidopsis thaliana At3g12690 gene, complet... 52 6e-004
ref|NM_112105.2| Arabidopsis thaliana kinase AT3G12690 tran... 52 6e-004
ref|NM_202566.1| Arabidopsis thaliana kinase AT3G12690 tran... 52 6e-004
ref|NM_202567.1| Arabidopsis thaliana kinase AT3G12690 tran... 52 6e-004
gb|BP788492.1|BP788492 BP788492 RAFL7 Arabidopsis thaliana ... 50 0.003
emb|BX822704.1|CNS0A75G Arabidopsis thaliana Full-length cD... 46 0.039
dbj|AB025629.1| Arabidopsis thaliana genomic DNA, chromosom... 46 0.039
emb|AL138657.1|ATF9K21 Arabidopsis thaliana DNA chromosome ... 46 0.039
ref|NM_112974.2| Arabidopsis thaliana kinase AT3G20830 mRNA... 46 0.039
gb|BZ380980.1|BZ380980 SALK_116067.53.80.x Arabidopsis thal... 44 0.16
>gb|AF030864.1|AF030864 Arabidopsis thaliana nonphototropic hypocotyl 1 (NPH1) mRNA, complete
cds
Length = 3247
Score = 157 bits (79), Expect = 2e-035
Identities = 283/351 (80%)
Strand = Plus / Plus
Query: 1567 gaaatgagaaagggcatagatttggctaccacacttgaacgtattgaaaagaattttgtc 1626
|||||||||||||| || ||| | ||||| ||||| |||||||| || |||||||| |||
Sbjct: 1438 gaaatgagaaagggtattgatctagctactacactcgaacgtatcgagaagaatttcgtc 1497
Query: 1627 atcaccgacccgaggttaccagataatccaattatatttgcatcggatagctttttgcgt 1686
||||| || || ||| | || |||||||| ||||| |||||||| ||||| || |||
Sbjct: 1498 atcactgatcctaggcttcccgataatcccattatttttgcatctgatagtttcttggag 1557
Query: 1687 ttgacagagtattgccgcgaagaaatattgggaagaaactgcaggtttcttcaaggacct 1746
| || || ||| |||| |||||||| | |||||||| ||||||||||| ||||| ||
Sbjct: 1558 ctcacggaatatagccgtgaagaaattcttggaagaaattgcaggtttctacaaggtcca 1617
Query: 1747 gaaactgaccgtgggacagtaaagaagataagagatgccatagataaccaaacagaagtt 1806
|| ||||| | ||||| |||||||| || |||| || ||||||||||| |||||
Sbjct: 1618 gagactgatctaaccacagtgaagaagattcgaaatgctattgataaccaaaccgaagtg 1677
Query: 1807 actgttcagctgataaattatacaaagagcggtaagaaattctggaacctctttcacttg 1866
|| |||||||| || || || || |||||||| ||||| ||||||||| | || ||||||
Sbjct: 1678 acagttcagctcatcaactacaccaagagcggaaagaagttctggaacattttccacttg 1737
Query: 1867 cagcctatgcgtgatcagaagggtgatgttcaatacttcattggggttcaa 1917
|| |||||||||||||||||||| || || |||||||| ||||| ||||||
Sbjct: 1738 caacctatgcgtgatcagaagggagaagtacaatactttattggagttcaa 1788
Score = 109 bits (55), Expect = 3e-021
Identities = 139/167 (83%)
Strand = Plus / Plus
Query: 2695 gctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccggag 2754
|||||||||||||| |||||||| || |||||||| || || ||||||||||| |||||
Sbjct: 2590 gctgaaccaatgcgtgcatcaaactcatttgttggcactgaagagtacattgctccggaa 2649
Query: 2755 attattaccggagctggccatacgagtgctgtagattggtgggcgctaggaattcttcta 2814
||||| ||||||| || ||||||||||| ||||| |||||||| || || || ||| |
Sbjct: 2650 attatatccggagcaggacatacgagtgcagtagactggtgggctcttggtatacttatg 2709
Query: 2815 tatgagatgttatatggttatacacccttcagagggaaaacaagaca 2861
||||| |||||||| || || || || || ||||| |||||||||||
Sbjct: 2710 tatgaaatgttatacggatacactccttttagaggaaaaacaagaca 2756
Score = 73.8 bits (37), Expect = 2e-010
Identities = 193/245 (78%)
Strand = Plus / Plus
Query: 2236 tttgccatgaaagctatggataaaagtgtcatgcttaaccgaaacaaggtccatagagct 2295
||||| |||||||| ||||| || ||| ||||||||||||||||| || |||||||||
Sbjct: 2128 tttgcaatgaaagcaatggacaaggctgttatgcttaaccgaaacaaagtacatagagct 2187
Query: 2296 accgctgaacgacaaatccttgatatgttggaccacccattccttccgacattgtatgca 2355
| ||||| || | ||||| ||| || | ||||| || || ||||| || | || ||
Sbjct: 2188 agagctgagagagagatcctagatttgcttgaccatccttttcttcctgcactctacgct 2247
Query: 2356 tcatttcagacaaagacacatatatgtcttattgttgactattgtgctggtggggaactc 2415
|| ||||||||||| ||||||||||||||||| || || | | | || || ||||||
Sbjct: 2248 tcttttcagacaaaaacacatatatgtcttataacagattactatccaggaggagaactc 2307
Query: 2416 tttatgctccttgataggcaacctatgaaggttctgaaggaggatgcggtcaggttctat 2475
|| |||||||| ||| | ||||||| ||||||||| || || ||||| || || ||||||
Sbjct: 2308 ttcatgctcctagatcgacaacctaggaaggttctcaaagaagatgctgtaagattctat 2367
Query: 2476 gctgc 2480
|||||
Sbjct: 2368 gctgc 2372
>gb|AF360218.1| Arabidopsis thaliana putative nonphototropic hypocotyl 1 protein
(At3g45780) mRNA, complete cds
Length = 3117
Score = 157 bits (79), Expect = 2e-035
Identities = 283/351 (80%)
Strand = Plus / Plus
Query: 1567 gaaatgagaaagggcatagatttggctaccacacttgaacgtattgaaaagaattttgtc 1626
|||||||||||||| || ||| | ||||| ||||| |||||||| || |||||||| |||
Sbjct: 1392 gaaatgagaaagggtattgatctagctactacactcgaacgtatcgagaagaatttcgtc 1451
Query: 1627 atcaccgacccgaggttaccagataatccaattatatttgcatcggatagctttttgcgt 1686
||||| || || ||| | || |||||||| ||||| |||||||| ||||| || |||
Sbjct: 1452 atcactgatcctaggcttcccgataatcccattatttttgcatctgatagtttcttggag 1511
Query: 1687 ttgacagagtattgccgcgaagaaatattgggaagaaactgcaggtttcttcaaggacct 1746
| || || ||| |||| |||||||| | |||||||| ||||||||||| ||||| ||
Sbjct: 1512 ctcacggaatatagccgtgaagaaattcttggaagaaattgcaggtttctacaaggtcca 1571
Query: 1747 gaaactgaccgtgggacagtaaagaagataagagatgccatagataaccaaacagaagtt 1806
|| ||||| | ||||| |||||||| || |||| || ||||||||||| |||||
Sbjct: 1572 gagactgatctaaccacagtgaagaagattcgaaatgctattgataaccaaaccgaagtg 1631
Query: 1807 actgttcagctgataaattatacaaagagcggtaagaaattctggaacctctttcacttg 1866
|| |||||||| || || || || |||||||| ||||| ||||||||| | || ||||||
Sbjct: 1632 acagttcagctcatcaactacaccaagagcggaaagaagttctggaacattttccacttg 1691
Query: 1867 cagcctatgcgtgatcagaagggtgatgttcaatacttcattggggttcaa 1917
|| |||||||||||||||||||| || || |||||||| ||||| ||||||
Sbjct: 1692 caacctatgcgtgatcagaagggagaagtacaatactttattggagttcaa 1742
Score = 109 bits (55), Expect = 3e-021
Identities = 139/167 (83%)
Strand = Plus / Plus
Query: 2695 gctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccggag 2754
|||||||||||||| |||||||| || |||||||| || || ||||||||||| |||||
Sbjct: 2544 gctgaaccaatgcgtgcatcaaactcatttgttggcactgaagagtacattgctccggaa 2603
Query: 2755 attattaccggagctggccatacgagtgctgtagattggtgggcgctaggaattcttcta 2814
||||| ||||||| || ||||||||||| ||||| |||||||| || || || ||| |
Sbjct: 2604 attatatccggagcaggacatacgagtgcagtagactggtgggctcttggtatacttatg 2663
Query: 2815 tatgagatgttatatggttatacacccttcagagggaaaacaagaca 2861
||||| |||||||| || || || || || ||||| |||||||||||
Sbjct: 2664 tatgaaatgttatacggatacactccttttagaggaaaaacaagaca 2710
Score = 73.8 bits (37), Expect = 2e-010
Identities = 193/245 (78%)
Strand = Plus / Plus
Query: 2236 tttgccatgaaagctatggataaaagtgtcatgcttaaccgaaacaaggtccatagagct 2295
||||| |||||||| ||||| || ||| ||||||||||||||||| || |||||||||
Sbjct: 2082 tttgcaatgaaagcaatggacaaggctgttatgcttaaccgaaacaaagtacatagagct 2141
Query: 2296 accgctgaacgacaaatccttgatatgttggaccacccattccttccgacattgtatgca 2355
| ||||| || | ||||| ||| || | ||||| || || ||||| || | || ||
Sbjct: 2142 agagctgagagagagatcctagatttgcttgaccatccttttcttcctgcactctacgct 2201
Query: 2356 tcatttcagacaaagacacatatatgtcttattgttgactattgtgctggtggggaactc 2415
|| ||||||||||| ||||||||||||||||| || || | | | || || ||||||
Sbjct: 2202 tcttttcagacaaaaacacatatatgtcttataacagattactatccaggaggagaactc 2261
Query: 2416 tttatgctccttgataggcaacctatgaaggttctgaaggaggatgcggtcaggttctat 2475
|| |||||||| ||| | ||||||| ||||||||| || || ||||| || || ||||||
Sbjct: 2262 ttcatgctcctagatcgacaacctaggaaggttctcaaagaagatgctgtaagattctat 2321
Query: 2476 gctgc 2480
|||||
Sbjct: 2322 gctgc 2326
>gb|AY040062.1| Arabidopsis thaliana putative nonphototropic hypocotyl 1 protein
(At3g45780) mRNA, complete cds
Length = 2991
Score = 157 bits (79), Expect = 2e-035
Identities = 283/351 (80%)
Strand = Plus / Plus
Query: 1567 gaaatgagaaagggcatagatttggctaccacacttgaacgtattgaaaagaattttgtc 1626
|||||||||||||| || ||| | ||||| ||||| |||||||| || |||||||| |||
Sbjct: 1375 gaaatgagaaagggtattgatctagctactacactcgaacgtatcgagaagaatttcgtc 1434
Query: 1627 atcaccgacccgaggttaccagataatccaattatatttgcatcggatagctttttgcgt 1686
||||| || || ||| | || |||||||| ||||| |||||||| ||||| || |||
Sbjct: 1435 atcactgatcctaggcttcccgataatcccattatttttgcatctgatagtttcttggag 1494
Query: 1687 ttgacagagtattgccgcgaagaaatattgggaagaaactgcaggtttcttcaaggacct 1746
| || || ||| |||| |||||||| | |||||||| ||||||||||| ||||| ||
Sbjct: 1495 ctcacggaatatagccgtgaagaaattcttggaagaaattgcaggtttctacaaggtcca 1554
Query: 1747 gaaactgaccgtgggacagtaaagaagataagagatgccatagataaccaaacagaagtt 1806
|| ||||| | ||||| |||||||| || |||| || ||||||||||| |||||
Sbjct: 1555 gagactgatctaaccacagtgaagaagattcgaaatgctattgataaccaaaccgaagtg 1614
Query: 1807 actgttcagctgataaattatacaaagagcggtaagaaattctggaacctctttcacttg 1866
|| |||||||| || || || || |||||||| ||||| ||||||||| | || ||||||
Sbjct: 1615 acagttcagctcatcaactacaccaagagcggaaagaagttctggaacattttccacttg 1674
Query: 1867 cagcctatgcgtgatcagaagggtgatgttcaatacttcattggggttcaa 1917
|| |||||||||||||||||||| || || |||||||| ||||| ||||||
Sbjct: 1675 caacctatgcgtgatcagaagggagaagtacaatactttattggagttcaa 1725
Score = 109 bits (55), Expect = 3e-021
Identities = 139/167 (83%)
Strand = Plus / Plus
Query: 2695 gctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccggag 2754
|||||||||||||| |||||||| || |||||||| || || ||||||||||| |||||
Sbjct: 2527 gctgaaccaatgcgtgcatcaaactcatttgttggcactgaagagtacattgctccggaa 2586
Query: 2755 attattaccggagctggccatacgagtgctgtagattggtgggcgctaggaattcttcta 2814
||||| ||||||| || ||||||||||| ||||| |||||||| || || || ||| |
Sbjct: 2587 attatatccggagcaggacatacgagtgcagtagactggtgggctcttggtatacttatg 2646
Query: 2815 tatgagatgttatatggttatacacccttcagagggaaaacaagaca 2861
||||| |||||||| || || || || || ||||| |||||||||||
Sbjct: 2647 tatgaaatgttatacggatacactccttttagaggaaaaacaagaca 2693
Score = 73.8 bits (37), Expect = 2e-010
Identities = 193/245 (78%)
Strand = Plus / Plus
Query: 2236 tttgccatgaaagctatggataaaagtgtcatgcttaaccgaaacaaggtccatagagct 2295
||||| |||||||| ||||| || ||| ||||||||||||||||| || |||||||||
Sbjct: 2065 tttgcaatgaaagcaatggacaaggctgttatgcttaaccgaaacaaagtacatagagct 2124
Query: 2296 accgctgaacgacaaatccttgatatgttggaccacccattccttccgacattgtatgca 2355
| ||||| || | ||||| ||| || | ||||| || || ||||| || | || ||
Sbjct: 2125 agagctgagagagagatcctagatttgcttgaccatccttttcttcctgcactctacgct 2184
Query: 2356 tcatttcagacaaagacacatatatgtcttattgttgactattgtgctggtggggaactc 2415
|| ||||||||||| ||||||||||||||||| || || | | | || || ||||||
Sbjct: 2185 tcttttcagacaaaaacacatatatgtcttataacagattactatccaggaggagaactc 2244
Query: 2416 tttatgctccttgataggcaacctatgaaggttctgaaggaggatgcggtcaggttctat 2475
|| |||||||| ||| | ||||||| ||||||||| || || ||||| || || ||||||
Sbjct: 2245 ttcatgctcctagatcgacaacctaggaaggttctcaaagaagatgctgtaagattctat 2304
Query: 2476 gctgc 2480
|||||
Sbjct: 2305 gctgc 2309
>emb|AX507403.1| Sequence 2098 from Patent WO0216655
Length = 2991
Score = 157 bits (79), Expect = 2e-035
Identities = 283/351 (80%)
Strand = Plus / Plus
Query: 1567 gaaatgagaaagggcatagatttggctaccacacttgaacgtattgaaaagaattttgtc 1626
|||||||||||||| || ||| | ||||| ||||| |||||||| || |||||||| |||
Sbjct: 1375 gaaatgagaaagggtattgatctagctactacactcgaacgtatcgagaagaatttcgtc 1434
Query: 1627 atcaccgacccgaggttaccagataatccaattatatttgcatcggatagctttttgcgt 1686
||||| || || ||| | || |||||||| ||||| |||||||| ||||| || |||
Sbjct: 1435 atcactgatcctaggcttcccgataatcccattatttttgcatctgatagtttcttggag 1494
Query: 1687 ttgacagagtattgccgcgaagaaatattgggaagaaactgcaggtttcttcaaggacct 1746
| || || ||| |||| |||||||| | |||||||| ||||||||||| ||||| ||
Sbjct: 1495 ctcacggaatatagccgtgaagaaattcttggaagaaattgcaggtttctacaaggtcca 1554
Query: 1747 gaaactgaccgtgggacagtaaagaagataagagatgccatagataaccaaacagaagtt 1806
|| ||||| | ||||| |||||||| || |||| || ||||||||||| |||||
Sbjct: 1555 gagactgatctaaccacagtgaagaagattcgaaatgctattgataaccaaaccgaagtg 1614
Query: 1807 actgttcagctgataaattatacaaagagcggtaagaaattctggaacctctttcacttg 1866
|| |||||||| || || || || |||||||| ||||| ||||||||| | || ||||||
Sbjct: 1615 acagttcagctcatcaactacaccaagagcggaaagaagttctggaacattttccacttg 1674
Query: 1867 cagcctatgcgtgatcagaagggtgatgttcaatacttcattggggttcaa 1917
|| |||||||||||||||||||| || || |||||||| ||||| ||||||
Sbjct: 1675 caacctatgcgtgatcagaagggagaagtacaatactttattggagttcaa 1725
Score = 109 bits (55), Expect = 3e-021
Identities = 139/167 (83%)
Strand = Plus / Plus
Query: 2695 gctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccggag 2754
|||||||||||||| |||||||| || |||||||| || || ||||||||||| |||||
Sbjct: 2527 gctgaaccaatgcgtgcatcaaactcatttgttggcactgaagagtacattgctccggaa 2586
Query: 2755 attattaccggagctggccatacgagtgctgtagattggtgggcgctaggaattcttcta 2814
||||| ||||||| || ||||||||||| ||||| |||||||| || || || ||| |
Sbjct: 2587 attatatccggagcaggacatacgagtgcagtagactggtgggctcttggtatacttatg 2646
Query: 2815 tatgagatgttatatggttatacacccttcagagggaaaacaagaca 2861
||||| |||||||| || || || || || ||||| |||||||||||
Sbjct: 2647 tatgaaatgttatacggatacactccttttagaggaaaaacaagaca 2693
Score = 73.8 bits (37), Expect = 2e-010
Identities = 193/245 (78%)
Strand = Plus / Plus
Query: 2236 tttgccatgaaagctatggataaaagtgtcatgcttaaccgaaacaaggtccatagagct 2295
||||| |||||||| ||||| || ||| ||||||||||||||||| || |||||||||
Sbjct: 2065 tttgcaatgaaagcaatggacaaggctgttatgcttaaccgaaacaaagtacatagagct 2124
Query: 2296 accgctgaacgacaaatccttgatatgttggaccacccattccttccgacattgtatgca 2355
| ||||| || | ||||| ||| || | ||||| || || ||||| || | || ||
Sbjct: 2125 agagctgagagagagatcctagatttgcttgaccatccttttcttcctgcactctacgct 2184
Query: 2356 tcatttcagacaaagacacatatatgtcttattgttgactattgtgctggtggggaactc 2415
|| ||||||||||| ||||||||||||||||| || || | | | || || ||||||
Sbjct: 2185 tcttttcagacaaaaacacatatatgtcttataacagattactatccaggaggagaactc 2244
Query: 2416 tttatgctccttgataggcaacctatgaaggttctgaaggaggatgcggtcaggttctat 2475
|| |||||||| ||| | ||||||| ||||||||| || || ||||| || || ||||||
Sbjct: 2245 ttcatgctcctagatcgacaacctaggaaggttctcaaagaagatgctgtaagattctat 2304
Query: 2476 gctgc 2480
|||||
Sbjct: 2305 gctgc 2309
>emb|CQ804312.1| Sequence 723 from Patent WO2004035798
Length = 2991
Score = 157 bits (79), Expect = 2e-035
Identities = 283/351 (80%)
Strand = Plus / Plus
Query: 1567 gaaatgagaaagggcatagatttggctaccacacttgaacgtattgaaaagaattttgtc 1626
|||||||||||||| || ||| | ||||| ||||| |||||||| || |||||||| |||
Sbjct: 1375 gaaatgagaaagggtattgatctagctactacactcgaacgtatcgagaagaatttcgtc 1434
Query: 1627 atcaccgacccgaggttaccagataatccaattatatttgcatcggatagctttttgcgt 1686
||||| || || ||| | || |||||||| ||||| |||||||| ||||| || |||
Sbjct: 1435 atcactgatcctaggcttcccgataatcccattatttttgcatctgatagtttcttggag 1494
Query: 1687 ttgacagagtattgccgcgaagaaatattgggaagaaactgcaggtttcttcaaggacct 1746
| || || ||| |||| |||||||| | |||||||| ||||||||||| ||||| ||
Sbjct: 1495 ctcacggaatatagccgtgaagaaattcttggaagaaattgcaggtttctacaaggtcca 1554
Query: 1747 gaaactgaccgtgggacagtaaagaagataagagatgccatagataaccaaacagaagtt 1806
|| ||||| | ||||| |||||||| || |||| || ||||||||||| |||||
Sbjct: 1555 gagactgatctaaccacagtgaagaagattcgaaatgctattgataaccaaaccgaagtg 1614
Query: 1807 actgttcagctgataaattatacaaagagcggtaagaaattctggaacctctttcacttg 1866
|| |||||||| || || || || |||||||| ||||| ||||||||| | || ||||||
Sbjct: 1615 acagttcagctcatcaactacaccaagagcggaaagaagttctggaacattttccacttg 1674
Query: 1867 cagcctatgcgtgatcagaagggtgatgttcaatacttcattggggttcaa 1917
|| |||||||||||||||||||| || || |||||||| ||||| ||||||
Sbjct: 1675 caacctatgcgtgatcagaagggagaagtacaatactttattggagttcaa 1725
Score = 109 bits (55), Expect = 3e-021
Identities = 139/167 (83%)
Strand = Plus / Plus
Query: 2695 gctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccggag 2754
|||||||||||||| |||||||| || |||||||| || || ||||||||||| |||||
Sbjct: 2527 gctgaaccaatgcgtgcatcaaactcatttgttggcactgaagagtacattgctccggaa 2586
Query: 2755 attattaccggagctggccatacgagtgctgtagattggtgggcgctaggaattcttcta 2814
||||| ||||||| || ||||||||||| ||||| |||||||| || || || ||| |
Sbjct: 2587 attatatccggagcaggacatacgagtgcagtagactggtgggctcttggtatacttatg 2646
Query: 2815 tatgagatgttatatggttatacacccttcagagggaaaacaagaca 2861
||||| |||||||| || || || || || ||||| |||||||||||
Sbjct: 2647 tatgaaatgttatacggatacactccttttagaggaaaaacaagaca 2693
Score = 73.8 bits (37), Expect = 2e-010
Identities = 193/245 (78%)
Strand = Plus / Plus
Query: 2236 tttgccatgaaagctatggataaaagtgtcatgcttaaccgaaacaaggtccatagagct 2295
||||| |||||||| ||||| || ||| ||||||||||||||||| || |||||||||
Sbjct: 2065 tttgcaatgaaagcaatggacaaggctgttatgcttaaccgaaacaaagtacatagagct 2124
Query: 2296 accgctgaacgacaaatccttgatatgttggaccacccattccttccgacattgtatgca 2355
| ||||| || | ||||| ||| || | ||||| || || ||||| || | || ||
Sbjct: 2125 agagctgagagagagatcctagatttgcttgaccatccttttcttcctgcactctacgct 2184
Query: 2356 tcatttcagacaaagacacatatatgtcttattgttgactattgtgctggtggggaactc 2415
|| ||||||||||| ||||||||||||||||| || || | | | || || ||||||
Sbjct: 2185 tcttttcagacaaaaacacatatatgtcttataacagattactatccaggaggagaactc 2244
Query: 2416 tttatgctccttgataggcaacctatgaaggttctgaaggaggatgcggtcaggttctat 2475
|| |||||||| ||| | ||||||| ||||||||| || || ||||| || || ||||||
Sbjct: 2245 ttcatgctcctagatcgacaacctaggaaggttctcaaagaagatgctgtaagattctat 2304
Query: 2476 gctgc 2480
|||||
Sbjct: 2305 gctgc 2309
>dbj|AK221466.1| Arabidopsis thaliana mRNA for nonphototropic hypocotyl 1, partial
cds, clone: RAFL07-34-B14
Length = 2210
Score = 157 bits (79), Expect = 2e-035
Identities = 283/351 (80%)
Strand = Plus / Plus
Query: 1567 gaaatgagaaagggcatagatttggctaccacacttgaacgtattgaaaagaattttgtc 1626
|||||||||||||| || ||| | ||||| ||||| |||||||| || |||||||| |||
Sbjct: 1392 gaaatgagaaagggtattgatctagctactacactcgaacgtatcgagaagaatttcgtc 1451
Query: 1627 atcaccgacccgaggttaccagataatccaattatatttgcatcggatagctttttgcgt 1686
||||| || || ||| | || |||||||| ||||| |||||||| ||||| || |||
Sbjct: 1452 atcactgatcctaggcttcccgataatcccattatttttgcatctgatagtttcttggag 1511
Query: 1687 ttgacagagtattgccgcgaagaaatattgggaagaaactgcaggtttcttcaaggacct 1746
| || || ||| |||| |||||||| | |||||||| ||||||||||| ||||| ||
Sbjct: 1512 ctcacggaatatagccgtgaagaaattcttggaagaaattgcaggtttctacaaggtcca 1571
Query: 1747 gaaactgaccgtgggacagtaaagaagataagagatgccatagataaccaaacagaagtt 1806
|| ||||| | ||||| |||||||| || |||| || ||||||||||| |||||
Sbjct: 1572 gagactgatctaaccacagtgaagaagattcgaaatgctattgataaccaaaccgaagtg 1631
Query: 1807 actgttcagctgataaattatacaaagagcggtaagaaattctggaacctctttcacttg 1866
|| |||||||| || || || || |||||||| ||||| ||||||||| | || ||||||
Sbjct: 1632 acagttcagctcatcaactacaccaagagcggaaagaagttctggaacattttccacttg 1691
Query: 1867 cagcctatgcgtgatcagaagggtgatgttcaatacttcattggggttcaa 1917
|| |||||||||||||||||||| || || |||||||| ||||| ||||||
Sbjct: 1692 caacctatgcgtgatcagaagggagaagtacaatactttattggagttcaa 1742
Score = 50.1 bits (25), Expect = 0.003
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 2236 tttgccatgaaagctatggataaaagtgtcatgcttaaccgaaacaaggtccatagagct 2295
||||| |||||||| ||||| || ||| ||||||||||||||||| || |||||||||
Sbjct: 2082 tttgcaatgaaagcaatggacaaggctgttatgcttaaccgaaacaaagtacatagagct 2141
Query: 2296 a 2296
|
Sbjct: 2142 a 2142
>ref|NM_114447.2| Arabidopsis thaliana PHOT1; kinase AT3G45780 (PHOT1) transcript
variant AT3G45780.1 mRNA, complete cds
Length = 3249
Score = 157 bits (79), Expect = 2e-035
Identities = 283/351 (80%)
Strand = Plus / Plus
Query: 1567 gaaatgagaaagggcatagatttggctaccacacttgaacgtattgaaaagaattttgtc 1626
|||||||||||||| || ||| | ||||| ||||| |||||||| || |||||||| |||
Sbjct: 1438 gaaatgagaaagggtattgatctagctactacactcgaacgtatcgagaagaatttcgtc 1497
Query: 1627 atcaccgacccgaggttaccagataatccaattatatttgcatcggatagctttttgcgt 1686
||||| || || ||| | || |||||||| ||||| |||||||| ||||| || |||
Sbjct: 1498 atcactgatcctaggcttcccgataatcccattatttttgcatctgatagtttcttggag 1557
Query: 1687 ttgacagagtattgccgcgaagaaatattgggaagaaactgcaggtttcttcaaggacct 1746
| || || ||| |||| |||||||| | |||||||| ||||||||||| ||||| ||
Sbjct: 1558 ctcacggaatatagccgtgaagaaattcttggaagaaattgcaggtttctacaaggtcca 1617
Query: 1747 gaaactgaccgtgggacagtaaagaagataagagatgccatagataaccaaacagaagtt 1806
|| ||||| | ||||| |||||||| || |||| || ||||||||||| |||||
Sbjct: 1618 gagactgatctaaccacagtgaagaagattcgaaatgctattgataaccaaaccgaagtg 1677
Query: 1807 actgttcagctgataaattatacaaagagcggtaagaaattctggaacctctttcacttg 1866
|| |||||||| || || || || |||||||| ||||| ||||||||| | || ||||||
Sbjct: 1678 acagttcagctcatcaactacaccaagagcggaaagaagttctggaacattttccacttg 1737
Query: 1867 cagcctatgcgtgatcagaagggtgatgttcaatacttcattggggttcaa 1917
|| |||||||||||||||||||| || || |||||||| ||||| ||||||
Sbjct: 1738 caacctatgcgtgatcagaagggagaagtacaatactttattggagttcaa 1788
Score = 109 bits (55), Expect = 3e-021
Identities = 139/167 (83%)
Strand = Plus / Plus
Query: 2695 gctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccggag 2754
|||||||||||||| |||||||| || |||||||| || || ||||||||||| |||||
Sbjct: 2590 gctgaaccaatgcgtgcatcaaactcatttgttggcactgaagagtacattgctccggaa 2649
Query: 2755 attattaccggagctggccatacgagtgctgtagattggtgggcgctaggaattcttcta 2814
||||| ||||||| || ||||||||||| ||||| |||||||| || || || ||| |
Sbjct: 2650 attatatccggagcaggacatacgagtgcagtagactggtgggctcttggtatacttatg 2709
Query: 2815 tatgagatgttatatggttatacacccttcagagggaaaacaagaca 2861
||||| |||||||| || || || || || ||||| |||||||||||
Sbjct: 2710 tatgaaatgttatacggatacactccttttagaggaaaaacaagaca 2756
Score = 73.8 bits (37), Expect = 2e-010
Identities = 193/245 (78%)
Strand = Plus / Plus
Query: 2236 tttgccatgaaagctatggataaaagtgtcatgcttaaccgaaacaaggtccatagagct 2295
||||| |||||||| ||||| || ||| ||||||||||||||||| || |||||||||
Sbjct: 2128 tttgcaatgaaagcaatggacaaggctgttatgcttaaccgaaacaaagtacatagagct 2187
Query: 2296 accgctgaacgacaaatccttgatatgttggaccacccattccttccgacattgtatgca 2355
| ||||| || | ||||| ||| || | ||||| || || ||||| || | || ||
Sbjct: 2188 agagctgagagagagatcctagatttgcttgaccatccttttcttcctgcactctacgct 2247
Query: 2356 tcatttcagacaaagacacatatatgtcttattgttgactattgtgctggtggggaactc 2415
|| ||||||||||| ||||||||||||||||| || || | | | || || ||||||
Sbjct: 2248 tcttttcagacaaaaacacatatatgtcttataacagattactatccaggaggagaactc 2307
Query: 2416 tttatgctccttgataggcaacctatgaaggttctgaaggaggatgcggtcaggttctat 2475
|| |||||||| ||| | ||||||| ||||||||| || || ||||| || || ||||||
Sbjct: 2308 ttcatgctcctagatcgacaacctaggaaggttctcaaagaagatgctgtaagattctat 2367
Query: 2476 gctgc 2480
|||||
Sbjct: 2368 gctgc 2372
>ref|NM_001035737.1| Arabidopsis thaliana PHOT1; kinase AT3G45780 (PHOT1) transcript
variant AT3G45780.2 mRNA, complete cds
Length = 3355
Score = 157 bits (79), Expect = 2e-035
Identities = 283/351 (80%)
Strand = Plus / Plus
Query: 1567 gaaatgagaaagggcatagatttggctaccacacttgaacgtattgaaaagaattttgtc 1626
|||||||||||||| || ||| | ||||| ||||| |||||||| || |||||||| |||
Sbjct: 1489 gaaatgagaaagggtattgatctagctactacactcgaacgtatcgagaagaatttcgtc 1548
Query: 1627 atcaccgacccgaggttaccagataatccaattatatttgcatcggatagctttttgcgt 1686
||||| || || ||| | || |||||||| ||||| |||||||| ||||| || |||
Sbjct: 1549 atcactgatcctaggcttcccgataatcccattatttttgcatctgatagtttcttggag 1608
Query: 1687 ttgacagagtattgccgcgaagaaatattgggaagaaactgcaggtttcttcaaggacct 1746
| || || ||| |||| |||||||| | |||||||| ||||||||||| ||||| ||
Sbjct: 1609 ctcacggaatatagccgtgaagaaattcttggaagaaattgcaggtttctacaaggtcca 1668
Query: 1747 gaaactgaccgtgggacagtaaagaagataagagatgccatagataaccaaacagaagtt 1806
|| ||||| | ||||| |||||||| || |||| || ||||||||||| |||||
Sbjct: 1669 gagactgatctaaccacagtgaagaagattcgaaatgctattgataaccaaaccgaagtg 1728
Query: 1807 actgttcagctgataaattatacaaagagcggtaagaaattctggaacctctttcacttg 1866
|| |||||||| || || || || |||||||| ||||| ||||||||| | || ||||||
Sbjct: 1729 acagttcagctcatcaactacaccaagagcggaaagaagttctggaacattttccacttg 1788
Query: 1867 cagcctatgcgtgatcagaagggtgatgttcaatacttcattggggttcaa 1917
|| |||||||||||||||||||| || || |||||||| ||||| ||||||
Sbjct: 1789 caacctatgcgtgatcagaagggagaagtacaatactttattggagttcaa 1839
Score = 109 bits (55), Expect = 3e-021
Identities = 139/167 (83%)
Strand = Plus / Plus
Query: 2695 gctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccggag 2754
|||||||||||||| |||||||| || |||||||| || || ||||||||||| |||||
Sbjct: 2641 gctgaaccaatgcgtgcatcaaactcatttgttggcactgaagagtacattgctccggaa 2700
Query: 2755 attattaccggagctggccatacgagtgctgtagattggtgggcgctaggaattcttcta 2814
||||| ||||||| || ||||||||||| ||||| |||||||| || || || ||| |
Sbjct: 2701 attatatccggagcaggacatacgagtgcagtagactggtgggctcttggtatacttatg 2760
Query: 2815 tatgagatgttatatggttatacacccttcagagggaaaacaagaca 2861
||||| |||||||| || || || || || ||||| |||||||||||
Sbjct: 2761 tatgaaatgttatacggatacactccttttagaggaaaaacaagaca 2807
Score = 73.8 bits (37), Expect = 2e-010
Identities = 193/245 (78%)
Strand = Plus / Plus
Query: 2236 tttgccatgaaagctatggataaaagtgtcatgcttaaccgaaacaaggtccatagagct 2295
||||| |||||||| ||||| || ||| ||||||||||||||||| || |||||||||
Sbjct: 2179 tttgcaatgaaagcaatggacaaggctgttatgcttaaccgaaacaaagtacatagagct 2238
Query: 2296 accgctgaacgacaaatccttgatatgttggaccacccattccttccgacattgtatgca 2355
| ||||| || | ||||| ||| || | ||||| || || ||||| || | || ||
Sbjct: 2239 agagctgagagagagatcctagatttgcttgaccatccttttcttcctgcactctacgct 2298
Query: 2356 tcatttcagacaaagacacatatatgtcttattgttgactattgtgctggtggggaactc 2415
|| ||||||||||| ||||||||||||||||| || || | | | || || ||||||
Sbjct: 2299 tcttttcagacaaaaacacatatatgtcttataacagattactatccaggaggagaactc 2358
Query: 2416 tttatgctccttgataggcaacctatgaaggttctgaaggaggatgcggtcaggttctat 2475
|| |||||||| ||| | ||||||| ||||||||| || || ||||| || || ||||||
Sbjct: 2359 ttcatgctcctagatcgacaacctaggaaggttctcaaagaagatgctgtaagattctat 2418
Query: 2476 gctgc 2480
|||||
Sbjct: 2419 gctgc 2423
>gb|AV523433.1|AV523433 AV523433 Arabidopsis thaliana aboveground organs two to six-week old
Arabidopsis thaliana cDNA clone APZL27e06F 3', mRNA
sequence
Length = 622
Score = 109 bits (55), Expect = 3e-021
Identities = 139/167 (83%)
Strand = Plus / Minus
Query: 2695 gctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccggag 2754
|||||||||||||| |||||||| || |||||||| || || ||||||||||| |||||
Sbjct: 508 gctgaaccaatgcgtgcatcaaactcatttgttggcactgaagagtacattgctccggaa 449
Query: 2755 attattaccggagctggccatacgagtgctgtagattggtgggcgctaggaattcttcta 2814
||||| ||||||| || ||||||||||| ||||| |||||||| || || || ||| |
Sbjct: 448 attatatccggagcaggacatacgagtgcagtagactggtgggctcttggtatacttatg 389
Query: 2815 tatgagatgttatatggttatacacccttcagagggaaaacaagaca 2861
||||| |||||||| || || || || || ||||| |||||||||||
Sbjct: 388 tatgaaatgttatacggatacactccttttagaggaaaaacaagaca 342
>gb|CB264104.1|CB264104 90-E015023-035-004-D23-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA
clone MPIZp2000D234Q 5-PRIME, mRNA sequence
Length = 660
Score = 93.7 bits (47), Expect = 2e-016
Identities = 89/103 (86%)
Strand = Plus / Plus
Query: 1805 ttactgttcagctgataaattatacaaagagcggtaagaaattctggaacctctttcact 1864
||||||| ||| ||||||| || || || ||||| ||||||||||||||| | || ||||
Sbjct: 57 ttactgtgcagttgataaactacactaaaagcggaaagaaattctggaacttattccact 116
Query: 1865 tgcagcctatgcgtgatcagaagggtgatgttcaatacttcat 1907
|||| |||||||||||||||||||| || |||||||||||||
Sbjct: 117 tgcaacctatgcgtgatcagaagggagagcttcaatacttcat 159
Score = 54.0 bits (27), Expect = 2e-004
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 2182 tctggtgatactggcagtgtccacttggtggagttgcttggcacaggtgaatactttgcc 2241
||||||||||||||||||||||| ||||| ||| || ||||| |||||| | ||||
Sbjct: 455 tctggtgatactggcagtgtccatttggttgagctgaagggcacgggtgaactatatgcc 514
Query: 2242 atgaaagctatggataaaa 2260
|||||||| ||||| ||||
Sbjct: 515 atgaaagcaatggagaaaa 533
>gb|CF651451.1|CF651451 10-E021110-013-001-C03-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770C031Q 5-PRIME, mRNA sequence
Length = 855
Score = 93.7 bits (47), Expect = 2e-016
Identities = 89/103 (86%)
Strand = Plus / Plus
Query: 1805 ttactgttcagctgataaattatacaaagagcggtaagaaattctggaacctctttcact 1864
||||||| ||| ||||||| || || || ||||| ||||||||||||||| | || ||||
Sbjct: 262 ttactgtgcagttgataaactacactaaaagcggaaagaaattctggaacttattccact 321
Query: 1865 tgcagcctatgcgtgatcagaagggtgatgttcaatacttcat 1907
|||| |||||||||||||||||||| || |||||||||||||
Sbjct: 322 tgcaacctatgcgtgatcagaagggagagcttcaatacttcat 364
Score = 56.0 bits (28), Expect = 4e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 1648 gataatccaattatatttgcatcggatagctttttgcgtttgacagagtattgccgcgaa 1707
|||||||| ||||| |||||||| || |||||| | ||||||||||||| |||||
Sbjct: 105 gataatcccattatctttgcatcagacagctttcttgaattgacagagtattcacgcgag 164
Query: 1708 gaaatattgggaagaaactgcaggtttcttca 1739
||||||||||| ||||| || ||||||||||
Sbjct: 165 gaaatattggggagaaattgtcggtttcttca 196
Score = 54.0 bits (27), Expect = 2e-004
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 2182 tctggtgatactggcagtgtccacttggtggagttgcttggcacaggtgaatactttgcc 2241
||||||||||||||||||||||| ||||| ||| || ||||| |||||| | ||||
Sbjct: 660 tctggtgatactggcagtgtccatttggttgagctgaagggcacgggtgaactatatgcc 719
Query: 2242 atgaaagctatggataaaa 2260
|||||||| ||||| ||||
Sbjct: 720 atgaaagcaatggagaaaa 738
>gb|AF053941.2|AF053941 Arabidopsis thaliana non phototropic hypocotyl 1-like (NPL1) mRNA,
complete cds
Length = 2890
Score = 93.7 bits (47), Expect = 2e-016
Identities = 89/103 (86%)
Strand = Plus / Plus
Query: 1805 ttactgttcagctgataaattatacaaagagcggtaagaaattctggaacctctttcact 1864
||||||| ||| ||||||| || || || ||||| ||||||||||||||| | || ||||
Sbjct: 1361 ttactgtgcagttgataaactacactaaaagcggaaagaaattctggaacttattccact 1420
Query: 1865 tgcagcctatgcgtgatcagaagggtgatgttcaatacttcat 1907
|||| |||||||||||||||||||| || |||||||||||||
Sbjct: 1421 tgcaacctatgcgtgatcagaagggagagcttcaatacttcat 1463
Score = 56.0 bits (28), Expect = 4e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 1648 gataatccaattatatttgcatcggatagctttttgcgtttgacagagtattgccgcgaa 1707
|||||||| ||||| |||||||| || |||||| | ||||||||||||| |||||
Sbjct: 1204 gataatcccattatctttgcatcagacagctttcttgaattgacagagtattcacgcgag 1263
Query: 1708 gaaatattgggaagaaactgcaggtttcttca 1739
||||||||||| ||||| || ||||||||||
Sbjct: 1264 gaaatattggggagaaattgtcggtttcttca 1295
Score = 54.0 bits (27), Expect = 2e-004
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 2182 tctggtgatactggcagtgtccacttggtggagttgcttggcacaggtgaatactttgcc 2241
||||||||||||||||||||||| ||||| ||| || ||||| |||||| | ||||
Sbjct: 1759 tctggtgatactggcagtgtccatttggttgagctgaagggcacgggtgaactatatgcc 1818
Query: 2242 atgaaagctatggataaaa 2260
|||||||| ||||| ||||
Sbjct: 1819 atgaaagcaatggagaaaa 1837
Score = 44.1 bits (22), Expect = 0.16
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 1076 tcaagttcattgggatgcaagtggaagtaagtaagtacacggaagg 1121
||||||||||||||||||| || ||||| || || ||||| |||||
Sbjct: 686 tcaagttcattgggatgcaggttgaagttagcaaatacacagaagg 731
>gb|AY093141.1| Arabidopsis thaliana unknown protein (At5g58140) mRNA, complete cds
Length = 3108
Score = 93.7 bits (47), Expect = 2e-016
Identities = 89/103 (86%)
Strand = Plus / Plus
Query: 1805 ttactgttcagctgataaattatacaaagagcggtaagaaattctggaacctctttcact 1864
||||||| ||| ||||||| || || || ||||| ||||||||||||||| | || ||||
Sbjct: 1522 ttactgtgcagttgataaactacactaaaagcggaaagaaattctggaacttattccact 1581
Query: 1865 tgcagcctatgcgtgatcagaagggtgatgttcaatacttcat 1907
|||| |||||||||||||||||||| || |||||||||||||
Sbjct: 1582 tgcaacctatgcgtgatcagaagggagagcttcaatacttcat 1624
Score = 56.0 bits (28), Expect = 4e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 1648 gataatccaattatatttgcatcggatagctttttgcgtttgacagagtattgccgcgaa 1707
|||||||| ||||| |||||||| || |||||| | ||||||||||||| |||||
Sbjct: 1365 gataatcccattatctttgcatcagacagctttcttgaattgacagagtattcacgcgag 1424
Query: 1708 gaaatattgggaagaaactgcaggtttcttca 1739
||||||||||| ||||| || ||||||||||
Sbjct: 1425 gaaatattggggagaaattgtcggtttcttca 1456
Score = 54.0 bits (27), Expect = 2e-004
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 2182 tctggtgatactggcagtgtccacttggtggagttgcttggcacaggtgaatactttgcc 2241
||||||||||||||||||||||| ||||| ||| || ||||| |||||| | ||||
Sbjct: 1995 tctggtgatactggcagtgtccatttggttgagctgaagggcacgggtgaactatatgcc 2054
Query: 2242 atgaaagctatggataaaa 2260
|||||||| ||||| ||||
Sbjct: 2055 atgaaagcaatggagaaaa 2073
Score = 44.1 bits (22), Expect = 0.16
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 1076 tcaagttcattgggatgcaagtggaagtaagtaagtacacggaagg 1121
||||||||||||||||||| || ||||| || || ||||| |||||
Sbjct: 847 tcaagttcattgggatgcaggttgaagttagcaaatacacagaagg 892
>emb|AX507819.1| Sequence 2514 from Patent WO0216655
Length = 2763
Score = 93.7 bits (47), Expect = 2e-016
Identities = 89/103 (86%)
Strand = Plus / Plus
Query: 1805 ttactgttcagctgataaattatacaaagagcggtaagaaattctggaacctctttcact 1864
||||||| ||| ||||||| || || || ||||| ||||||||||||||| | || ||||
Sbjct: 1355 ttactgtgcagttgataaactacactaaaagcggaaagaaattctggaacttattccact 1414
Query: 1865 tgcagcctatgcgtgatcagaagggtgatgttcaatacttcat 1907
|||| |||||||||||||||||||| || |||||||||||||
Sbjct: 1415 tgcaacctatgcgtgatcagaagggagagcttcaatacttcat 1457
Score = 56.0 bits (28), Expect = 4e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 1648 gataatccaattatatttgcatcggatagctttttgcgtttgacagagtattgccgcgaa 1707
|||||||| ||||| |||||||| || |||||| | ||||||||||||| |||||
Sbjct: 1198 gataatcccattatctttgcatcagacagctttcttgaattgacagagtattcacgcgag 1257
Query: 1708 gaaatattgggaagaaactgcaggtttcttca 1739
||||||||||| ||||| || ||||||||||
Sbjct: 1258 gaaatattggggagaaattgtcggtttcttca 1289
Score = 54.0 bits (27), Expect = 2e-004
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 2182 tctggtgatactggcagtgtccacttggtggagttgcttggcacaggtgaatactttgcc 2241
||||||||||||||||||||||| ||||| ||| || ||||| |||||| | ||||
Sbjct: 1768 tctggtgatactggcagtgtccatttggttgagctgaagggcacgggtgaactatatgcc 1827
Query: 2242 atgaaagctatggataaaa 2260
|||||||| ||||| ||||
Sbjct: 1828 atgaaagcaatggagaaaa 1846
Score = 44.1 bits (22), Expect = 0.16
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 1076 tcaagttcattgggatgcaagtggaagtaagtaagtacacggaagg 1121
||||||||||||||||||| || ||||| || || ||||| |||||
Sbjct: 680 tcaagttcattgggatgcaggttgaagttagcaaatacacagaagg 725
>gb|BT008901.1| Arabidopsis thaliana At5g58140 mRNA, complete cds
Length = 1650
Score = 93.7 bits (47), Expect = 2e-016
Identities = 89/103 (86%)
Strand = Plus / Plus
Query: 1805 ttactgttcagctgataaattatacaaagagcggtaagaaattctggaacctctttcact 1864
||||||| ||| ||||||| || || || ||||| ||||||||||||||| | || ||||
Sbjct: 1355 ttactgtgcagttgataaactacactaaaagcggaaagaaattctggaacttattccact 1414
Query: 1865 tgcagcctatgcgtgatcagaagggtgatgttcaatacttcat 1907
|||| |||||||||||||||||||| || |||||||||||||
Sbjct: 1415 tgcaacctatgcgtgatcagaagggagagcttcaatacttcat 1457
Score = 56.0 bits (28), Expect = 4e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 1648 gataatccaattatatttgcatcggatagctttttgcgtttgacagagtattgccgcgaa 1707
|||||||| ||||| |||||||| || |||||| | ||||||||||||| |||||
Sbjct: 1198 gataatcccattatctttgcatcagacagctttcttgaattgacagagtattcacgcgag 1257
Query: 1708 gaaatattgggaagaaactgcaggtttcttca 1739
||||||||||| ||||| || ||||||||||
Sbjct: 1258 gaaatattggggagaaattgtcggtttcttca 1289
Score = 44.1 bits (22), Expect = 0.16
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 1076 tcaagttcattgggatgcaagtggaagtaagtaagtacacggaagg 1121
||||||||||||||||||| || ||||| || || ||||| |||||
Sbjct: 680 tcaagttcattgggatgcaggttgaagttagcaaatacacagaagg 725
>ref|NM_180879.1| Arabidopsis thaliana PHOT2 (NON PHOTOTROPIC HYPOCOTYL 1-LIKE); kinase
AT5G58140 (PHOT2) transcript variant AT5G58140.1 mRNA,
complete cds
Length = 5977
Score = 93.7 bits (47), Expect = 2e-016
Identities = 89/103 (86%)
Strand = Plus / Plus
Query: 1805 ttactgttcagctgataaattatacaaagagcggtaagaaattctggaacctctttcact 1864
||||||| ||| ||||||| || || || ||||| ||||||||||||||| | || ||||
Sbjct: 1466 ttactgtgcagttgataaactacactaaaagcggaaagaaattctggaacttattccact 1525
Query: 1865 tgcagcctatgcgtgatcagaagggtgatgttcaatacttcat 1907
|||| |||||||||||||||||||| || |||||||||||||
Sbjct: 1526 tgcaacctatgcgtgatcagaagggagagcttcaatacttcat 1568
Score = 56.0 bits (28), Expect = 4e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 1648 gataatccaattatatttgcatcggatagctttttgcgtttgacagagtattgccgcgaa 1707
|||||||| ||||| |||||||| || |||||| | ||||||||||||| |||||
Sbjct: 1309 gataatcccattatctttgcatcagacagctttcttgaattgacagagtattcacgcgag 1368
Query: 1708 gaaatattgggaagaaactgcaggtttcttca 1739
||||||||||| ||||| || ||||||||||
Sbjct: 1369 gaaatattggggagaaattgtcggtttcttca 1400
Score = 54.0 bits (27), Expect = 2e-004
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 2182 tctggtgatactggcagtgtccacttggtggagttgcttggcacaggtgaatactttgcc 2241
||||||||||||||||||||||| ||||| ||| || ||||| |||||| | ||||
Sbjct: 1864 tctggtgatactggcagtgtccatttggttgagctgaagggcacgggtgaactatatgcc 1923
Query: 2242 atgaaagctatggataaaa 2260
|||||||| ||||| ||||
Sbjct: 1924 atgaaagcaatggagaaaa 1942
Score = 44.1 bits (22), Expect = 0.16
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 1076 tcaagttcattgggatgcaagtggaagtaagtaagtacacggaagg 1121
||||||||||||||||||| || ||||| || || ||||| |||||
Sbjct: 791 tcaagttcattgggatgcaggttgaagttagcaaatacacagaagg 836
>ref|NM_180880.1| Arabidopsis thaliana PHOT2 (NON PHOTOTROPIC HYPOCOTYL 1-LIKE); kinase
AT5G58140 (PHOT2) transcript variant AT5G58140.2 mRNA,
complete cds
Length = 6033
Score = 93.7 bits (47), Expect = 2e-016
Identities = 89/103 (86%)
Strand = Plus / Plus
Query: 1805 ttactgttcagctgataaattatacaaagagcggtaagaaattctggaacctctttcact 1864
||||||| ||| ||||||| || || || ||||| ||||||||||||||| | || ||||
Sbjct: 1522 ttactgtgcagttgataaactacactaaaagcggaaagaaattctggaacttattccact 1581
Query: 1865 tgcagcctatgcgtgatcagaagggtgatgttcaatacttcat 1907
|||| |||||||||||||||||||| || |||||||||||||
Sbjct: 1582 tgcaacctatgcgtgatcagaagggagagcttcaatacttcat 1624
Score = 56.0 bits (28), Expect = 4e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 1648 gataatccaattatatttgcatcggatagctttttgcgtttgacagagtattgccgcgaa 1707
|||||||| ||||| |||||||| || |||||| | ||||||||||||| |||||
Sbjct: 1365 gataatcccattatctttgcatcagacagctttcttgaattgacagagtattcacgcgag 1424
Query: 1708 gaaatattgggaagaaactgcaggtttcttca 1739
||||||||||| ||||| || ||||||||||
Sbjct: 1425 gaaatattggggagaaattgtcggtttcttca 1456
Score = 54.0 bits (27), Expect = 2e-004
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 2182 tctggtgatactggcagtgtccacttggtggagttgcttggcacaggtgaatactttgcc 2241
||||||||||||||||||||||| ||||| ||| || ||||| |||||| | ||||
Sbjct: 1920 tctggtgatactggcagtgtccatttggttgagctgaagggcacgggtgaactatatgcc 1979
Query: 2242 atgaaagctatggataaaa 2260
|||||||| ||||| ||||
Sbjct: 1980 atgaaagcaatggagaaaa 1998
Score = 44.1 bits (22), Expect = 0.16
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 1076 tcaagttcattgggatgcaagtggaagtaagtaagtacacggaagg 1121
||||||||||||||||||| || ||||| || || ||||| |||||
Sbjct: 847 tcaagttcattgggatgcaggttgaagttagcaaatacacagaagg 892
>ref|NM_180881.1| Arabidopsis thaliana PHOT2 (NON PHOTOTROPIC HYPOCOTYL 1-LIKE); kinase
AT5G58140 (PHOT2) transcript variant AT5G58140.3 mRNA,
complete cds
Length = 6033
Score = 93.7 bits (47), Expect = 2e-016
Identities = 89/103 (86%)
Strand = Plus / Plus
Query: 1805 ttactgttcagctgataaattatacaaagagcggtaagaaattctggaacctctttcact 1864
||||||| ||| ||||||| || || || ||||| ||||||||||||||| | || ||||
Sbjct: 1522 ttactgtgcagttgataaactacactaaaagcggaaagaaattctggaacttattccact 1581
Query: 1865 tgcagcctatgcgtgatcagaagggtgatgttcaatacttcat 1907
|||| |||||||||||||||||||| || |||||||||||||
Sbjct: 1582 tgcaacctatgcgtgatcagaagggagagcttcaatacttcat 1624
Score = 56.0 bits (28), Expect = 4e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 1648 gataatccaattatatttgcatcggatagctttttgcgtttgacagagtattgccgcgaa 1707
|||||||| ||||| |||||||| || |||||| | ||||||||||||| |||||
Sbjct: 1365 gataatcccattatctttgcatcagacagctttcttgaattgacagagtattcacgcgag 1424
Query: 1708 gaaatattgggaagaaactgcaggtttcttca 1739
||||||||||| ||||| || ||||||||||
Sbjct: 1425 gaaatattggggagaaattgtcggtttcttca 1456
Score = 54.0 bits (27), Expect = 2e-004
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 2182 tctggtgatactggcagtgtccacttggtggagttgcttggcacaggtgaatactttgcc 2241
||||||||||||||||||||||| ||||| ||| || ||||| |||||| | ||||
Sbjct: 1920 tctggtgatactggcagtgtccatttggttgagctgaagggcacgggtgaactatatgcc 1979
Query: 2242 atgaaagctatggataaaa 2260
|||||||| ||||| ||||
Sbjct: 1980 atgaaagcaatggagaaaa 1998
Score = 44.1 bits (22), Expect = 0.16
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 1076 tcaagttcattgggatgcaagtggaagtaagtaagtacacggaagg 1121
||||||||||||||||||| || ||||| || || ||||| |||||
Sbjct: 847 tcaagttcattgggatgcaggttgaagttagcaaatacacagaagg 892
>ref|NM_125199.2| Arabidopsis thaliana PHOT2 (NON PHOTOTROPIC HYPOCOTYL 1-LIKE); kinase
AT5G58140 (PHOT2) transcript variant AT5G58140.4 mRNA,
complete cds
Length = 2827
Score = 93.7 bits (47), Expect = 2e-016
Identities = 89/103 (86%)
Strand = Plus / Plus
Query: 1805 ttactgttcagctgataaattatacaaagagcggtaagaaattctggaacctctttcact 1864
||||||| ||| ||||||| || || || ||||| ||||||||||||||| | || ||||
Sbjct: 1466 ttactgtgcagttgataaactacactaaaagcggaaagaaattctggaacttattccact 1525
Query: 1865 tgcagcctatgcgtgatcagaagggtgatgttcaatacttcat 1907
|||| |||||||||||||||||||| || |||||||||||||
Sbjct: 1526 tgcaacctatgcgtgatcagaagggagagcttcaatacttcat 1568
Score = 56.0 bits (28), Expect = 4e-005
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 1648 gataatccaattatatttgcatcggatagctttttgcgtttgacagagtattgccgcgaa 1707
|||||||| ||||| |||||||| || |||||| | ||||||||||||| |||||
Sbjct: 1309 gataatcccattatctttgcatcagacagctttcttgaattgacagagtattcacgcgag 1368
Query: 1708 gaaatattgggaagaaactgcaggtttcttca 1739
||||||||||| ||||| || ||||||||||
Sbjct: 1369 gaaatattggggagaaattgtcggtttcttca 1400
Score = 54.0 bits (27), Expect = 2e-004
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 2182 tctggtgatactggcagtgtccacttggtggagttgcttggcacaggtgaatactttgcc 2241
||||||||||||||||||||||| ||||| ||| || ||||| |||||| | ||||
Sbjct: 1864 tctggtgatactggcagtgtccatttggttgagctgaagggcacgggtgaactatatgcc 1923
Query: 2242 atgaaagctatggataaaa 2260
|||||||| ||||| ||||
Sbjct: 1924 atgaaagcaatggagaaaa 1942
Score = 44.1 bits (22), Expect = 0.16
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 1076 tcaagttcattgggatgcaagtggaagtaagtaagtacacggaagg 1121
||||||||||||||||||| || ||||| || || ||||| |||||
Sbjct: 791 tcaagttcattgggatgcaggttgaagttagcaaatacacagaagg 836
>gb|AV523195.1|AV523195 AV523195 Arabidopsis thaliana aboveground organs two to six-week old
Arabidopsis thaliana cDNA clone APZL19g09F 3', mRNA
sequence
Length = 458
Score = 73.8 bits (37), Expect = 2e-010
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 2737 gagtacattgcaccggagattattaccggagctggccatacgagtgctgtagattggtgg 2796
||||||||||| ||||| ||||| ||||||| || ||||||||||| ||||| ||||||
Sbjct: 458 gagtacattgctccggaaattatatccggagcaggacatacgagtgcagtagactggtgg 399
Query: 2797 gcgctaggaattcttctatatgagatgttatatggttatacacccttcagagggaaaaca 2856
|| || || || ||| | ||||| |||||||| || || || || || ||||| ||||||
Sbjct: 398 gctcttggtatacttatgtatgaaatgttatacggatacactccttttagaggaaaaaca 339
Query: 2857 agaca 2861
|||||
Sbjct: 338 agaca 334
>gb|BP779517.1|BP779517 BP779517 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-68-H10 3', mRNA
sequence
Length = 407
Score = 69.9 bits (35), Expect = 3e-009
Identities = 170/215 (79%)
Strand = Plus / Minus
Query: 2266 atgcttaaccgaaacaaggtccatagagctaccgctgaacgacaaatccttgatatgttg 2325
||||||||||||||||| || |||||||||| ||||| || | ||||| ||| || |
Sbjct: 382 atgcttaaccgaaacaaagtacatagagctagagctgagagagagatcctagatttgctt 323
Query: 2326 gaccacccattccttccgacattgtatgcatcatttcagacaaagacacatatatgtctt 2385
||||| || || ||||| || | || || || ||||||||||| |||||||||||||||
Sbjct: 322 gaccatccttttcttcctgcactctacgcttcttttcagacaaaaacacatatatgtctt 263
Query: 2386 attgttgactattgtgctggtggggaactctttatgctccttgataggcaacctatgaag 2445
|| || || | | | || || |||||||| |||||||| ||| | ||||||| ||||
Sbjct: 262 ataacagattactatccaggaggagaactcttcatgctcctagatcgacaacctaggaag 203
Query: 2446 gttctgaaggaggatgcggtcaggttctatgctgc 2480
||||| || || ||||| || || |||||||||||
Sbjct: 202 gttctcaaagaagatgctgtaagattctatgctgc 168
>gb|AI999585.1|AI999585 701556518 A. thaliana, Columbia Col-0, rosette-3 Arabidopsis thaliana
cDNA clone 701556518, mRNA sequence
Length = 641
Score = 67.9 bits (34), Expect = 1e-008
Identities = 102/125 (81%)
Strand = Plus / Minus
Query: 2737 gagtacattgcaccggagattattaccggagctggccatacgagtgctgtagattggtgg 2796
||||||||||| ||||| ||||| ||||||| || ||||||||||| ||||| |||||
Sbjct: 579 gagtacattgctccggaaattatatccggagcaggacatacgagtgcagtagactggtgn 520
Query: 2797 gcgctaggaattcttctatatgagatgttatatggttatacacccttcagagggaaaaca 2856
|| || || || ||| | ||||| |||||||| || || || || || ||||| ||||||
Sbjct: 519 gctcttggtatacttatgtatgaaatgttatacggatacactccttttagaggaaaaaca 460
Query: 2857 agaca 2861
|||||
Sbjct: 459 agaca 455
>dbj|AB019228.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCK7
Length = 87090
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 1840 aagaaattctggaacctctttcacttgcagcctatgcgtgatcagaagg 1888
||||||||||||||| | || |||||||| |||||||||||||||||||
Sbjct: 397 aagaaattctggaacttattccacttgcaacctatgcgtgatcagaagg 445
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 1687 ttgacagagtattgccgcgaagaaatattgggaagaaa 1724
||||||||||||| ||||| ||||||||||| |||||
Sbjct: 29 ttgacagagtattcacgcgaggaaatattggggagaaa 66
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 65.9 bits (33), Expect = 4e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 1840 aagaaattctggaacctctttcacttgcagcctatgcgtgatcagaagg 1888
||||||||||||||| | || |||||||| |||||||||||||||||||
Sbjct: 23544495 aagaaattctggaacttattccacttgcaacctatgcgtgatcagaagg 23544543
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 1687 ttgacagagtattgccgcgaagaaatattgggaagaaa 1724
||||||||||||| ||||| ||||||||||| |||||
Sbjct: 23544127 ttgacagagtattcacgcgaggaaatattggggagaaa 23544164
>gb|CL465000.1|CL465000 SAIL_1232_C01.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_1232_C01.v1, DNA sequence
Length = 927
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 2695 gctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccgg 2752
|||||||||||||| |||||||| || |||||||| || || ||||||||||| ||||
Sbjct: 592 gctgaaccaatgcgtgcatcaaactcatttgttggcactgaagagtacattgctccgg 535
Score = 56.0 bits (28), Expect = 4e-005
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 2762 ccggagctggccatacgagtgctgtagattggtgggcgctaggaattcttctatatgaga 2821
||||||| || ||||||||||| ||||| |||||||| || || || ||| | ||||| |
Sbjct: 438 ccggagcaggacatacgagtgcagtagactggtgggctcttggtatacttatgtatgaaa 379
Query: 2822 tgttatatggttatacacccttcagagggaaaacaagaca 2861
||||||| || || || || || ||||| |||||||||||
Sbjct: 378 tgttatacggatacactccttttagaggaaaaacaagaca 339
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 2695 gctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccgg 2752
|||||||||||||| |||||||| || |||||||| || || ||||||||||| ||||
Sbjct: 16787265 gctgaaccaatgcgtgcatcaaactcatttgttggcactgaagagtacattgctccgg 16787322
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 1840 aagaaattctggaacctctttcacttgcagcctatgcgtgatcagaagg 1888
||||| ||||||||| | || |||||||| |||||||||||||||||||
Sbjct: 16785521 aagaagttctggaacattttccacttgcaacctatgcgtgatcagaagg 16785569
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 1567 gaaatgagaaagggcatagatttggctaccacacttgaacgtattgaaaagaattttgtc 1626
|||||||||||||| || ||| | ||||| ||||| |||||||| || |||||||| |||
Sbjct: 16784980 gaaatgagaaagggtattgatctagctactacactcgaacgtatcgagaagaatttcgtc 16785039
Query: 1627 atcac 1631
|||||
Sbjct: 16785040 atcac 16785044
Score = 56.0 bits (28), Expect = 4e-005
Identities = 82/100 (82%)
Strand = Plus / Plus
Query: 2762 ccggagctggccatacgagtgctgtagattggtgggcgctaggaattcttctatatgaga 2821
||||||| || ||||||||||| ||||| |||||||| || || || ||| | ||||| |
Sbjct: 16787419 ccggagcaggacatacgagtgcagtagactggtgggctcttggtatacttatgtatgaaa 16787478
Query: 2822 tgttatatggttatacacccttcagagggaaaacaagaca 2861
||||||| || || || || || ||||| |||||||||||
Sbjct: 16787479 tgttatacggatacactccttttagaggaaaaacaagaca 16787518
Score = 52.0 bits (26), Expect = 6e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 2527 tacagagacttaaagccagagaacat 2552
||||||||||||||||||||||||||
Sbjct: 4027317 tacagagacttaaagccagagaacat 4027292
Score = 46.1 bits (23), Expect = 0.039
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 1762 acagtaaagaagataagagatgccatagataaccaaacagaagttactgttcagctgata 1821
||||| |||||||| || |||| || ||||||||||| ||||| || |||||||| ||
Sbjct: 16785360 acagtgaagaagattcgaaatgctattgataaccaaaccgaagtgacagttcagctcatc 16785419
Query: 1822 aattatacaaagagcggta 1840
|| || || ||||||||||
Sbjct: 16785420 aactacaccaagagcggta 16785438
Score = 46.1 bits (23), Expect = 0.039
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 2236 tttgccatgaaagctatggataaaagtgtcatgcttaaccgaaacaa 2282
||||| |||||||| ||||| || |||||||||||||||||||||
Sbjct: 16728573 tttgctatgaaagcaatggacaaggctgtcatgcttaaccgaaacaa 16728527
Score = 46.1 bits (23), Expect = 0.039
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 2527 tacagagacttaaagccagagaacatt 2553
|||||||||||||| ||||||||||||
Sbjct: 7239286 tacagagacttaaaaccagagaacatt 7239260
Score = 44.1 bits (22), Expect = 0.16
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2362 cagacaaagacacatatatgtcttat 2387
|||||||| |||||||||||||||||
Sbjct: 16786649 cagacaaaaacacatatatgtcttat 16786674
>emb|AL157735.2|ATT6D9 Arabidopsis thaliana DNA chromosome 3, BAC clone T6D9
Length = 79716
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 2695 gctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccgg 2752
|||||||||||||| |||||||| || |||||||| || || ||||||||||| ||||
Sbjct: 73469 gctgaaccaatgcgtgcatcaaactcatttgttggcactgaagagtacattgctccgg 73526
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 1840 aagaaattctggaacctctttcacttgcagcctatgcgtgatcagaagg 1888
||||| ||||||||| | || |||||||| |||||||||||||||||||
Sbjct: 71725 aagaagttctggaacattttccacttgcaacctatgcgtgatcagaagg 71773
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 1567 gaaatgagaaagggcatagatttggctaccacacttgaacgtattgaaaagaattttgtc 1626
|||||||||||||| || ||| | ||||| ||||| |||||||| || |||||||| |||
Sbjct: 71184 gaaatgagaaagggtattgatctagctactacactcgaacgtatcgagaagaatttcgtc 71243
Query: 1627 atcac 1631
|||||
Sbjct: 71244 atcac 71248
Score = 56.0 bits (28), Expect = 4e-005
Identities = 82/100 (82%)
Strand = Plus / Plus
Query: 2762 ccggagctggccatacgagtgctgtagattggtgggcgctaggaattcttctatatgaga 2821
||||||| || ||||||||||| ||||| |||||||| || || || ||| | ||||| |
Sbjct: 73623 ccggagcaggacatacgagtgcagtagactggtgggctcttggtatacttatgtatgaaa 73682
Query: 2822 tgttatatggttatacacccttcagagggaaaacaagaca 2861
||||||| || || || || || ||||| |||||||||||
Sbjct: 73683 tgttatacggatacactccttttagaggaaaaacaagaca 73722
Score = 46.1 bits (23), Expect = 0.039
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 1762 acagtaaagaagataagagatgccatagataaccaaacagaagttactgttcagctgata 1821
||||| |||||||| || |||| || ||||||||||| ||||| || |||||||| ||
Sbjct: 71564 acagtgaagaagattcgaaatgctattgataaccaaaccgaagtgacagttcagctcatc 71623
Query: 1822 aattatacaaagagcggta 1840
|| || || ||||||||||
Sbjct: 71624 aactacaccaagagcggta 71642
Score = 46.1 bits (23), Expect = 0.039
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 2236 tttgccatgaaagctatggataaaagtgtcatgcttaaccgaaacaa 2282
||||| |||||||| ||||| || |||||||||||||||||||||
Sbjct: 14777 tttgctatgaaagcaatggacaaggctgtcatgcttaaccgaaacaa 14731
Score = 44.1 bits (22), Expect = 0.16
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2362 cagacaaagacacatatatgtcttat 2387
|||||||| |||||||||||||||||
Sbjct: 72853 cagacaaaaacacatatatgtcttat 72878
>emb|AL162459.2|ATF16L2 Arabidopsis thaliana DNA chromosome 3, BAC clone F16L2
Length = 111338
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 2695 gctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccgg 2752
|||||||||||||| |||||||| || |||||||| || || ||||||||||| ||||
Sbjct: 19583 gctgaaccaatgcgtgcatcaaactcatttgttggcactgaagagtacattgctccgg 19640
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 1840 aagaaattctggaacctctttcacttgcagcctatgcgtgatcagaagg 1888
||||| ||||||||| | || |||||||| |||||||||||||||||||
Sbjct: 17839 aagaagttctggaacattttccacttgcaacctatgcgtgatcagaagg 17887
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 1567 gaaatgagaaagggcatagatttggctaccacacttgaacgtattgaaaagaattttgtc 1626
|||||||||||||| || ||| | ||||| ||||| |||||||| || |||||||| |||
Sbjct: 17298 gaaatgagaaagggtattgatctagctactacactcgaacgtatcgagaagaatttcgtc 17357
Query: 1627 atcac 1631
|||||
Sbjct: 17358 atcac 17362
Score = 56.0 bits (28), Expect = 4e-005
Identities = 82/100 (82%)
Strand = Plus / Plus
Query: 2762 ccggagctggccatacgagtgctgtagattggtgggcgctaggaattcttctatatgaga 2821
||||||| || ||||||||||| ||||| |||||||| || || || ||| | ||||| |
Sbjct: 19737 ccggagcaggacatacgagtgcagtagactggtgggctcttggtatacttatgtatgaaa 19796
Query: 2822 tgttatatggttatacacccttcagagggaaaacaagaca 2861
||||||| || || || || || ||||| |||||||||||
Sbjct: 19797 tgttatacggatacactccttttagaggaaaaacaagaca 19836
Score = 46.1 bits (23), Expect = 0.039
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 1762 acagtaaagaagataagagatgccatagataaccaaacagaagttactgttcagctgata 1821
||||| |||||||| || |||| || ||||||||||| ||||| || |||||||| ||
Sbjct: 17678 acagtgaagaagattcgaaatgctattgataaccaaaccgaagtgacagttcagctcatc 17737
Query: 1822 aattatacaaagagcggta 1840
|| || || ||||||||||
Sbjct: 17738 aactacaccaagagcggta 17756
Score = 44.1 bits (22), Expect = 0.16
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2362 cagacaaagacacatatatgtcttat 2387
|||||||| |||||||||||||||||
Sbjct: 18967 cagacaaaaacacatatatgtcttat 18992
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 2695 gctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccgg 2752
|||||||||||||| |||||||| || |||||||| || || ||||||||||| ||||
Sbjct: 16834203 gctgaaccaatgcgtgcatcaaactcatttgttggcactgaagagtacattgctccgg 16834260
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 1840 aagaaattctggaacctctttcacttgcagcctatgcgtgatcagaagg 1888
||||| ||||||||| | || |||||||| |||||||||||||||||||
Sbjct: 16832459 aagaagttctggaacattttccacttgcaacctatgcgtgatcagaagg 16832507
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 1567 gaaatgagaaagggcatagatttggctaccacacttgaacgtattgaaaagaattttgtc 1626
|||||||||||||| || ||| | ||||| ||||| |||||||| || |||||||| |||
Sbjct: 16831918 gaaatgagaaagggtattgatctagctactacactcgaacgtatcgagaagaatttcgtc 16831977
Query: 1627 atcac 1631
|||||
Sbjct: 16831978 atcac 16831982
Score = 56.0 bits (28), Expect = 4e-005
Identities = 82/100 (82%)
Strand = Plus / Plus
Query: 2762 ccggagctggccatacgagtgctgtagattggtgggcgctaggaattcttctatatgaga 2821
||||||| || ||||||||||| ||||| |||||||| || || || ||| | ||||| |
Sbjct: 16834357 ccggagcaggacatacgagtgcagtagactggtgggctcttggtatacttatgtatgaaa 16834416
Query: 2822 tgttatatggttatacacccttcagagggaaaacaagaca 2861
||||||| || || || || || ||||| |||||||||||
Sbjct: 16834417 tgttatacggatacactccttttagaggaaaaacaagaca 16834456
Score = 52.0 bits (26), Expect = 6e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 2527 tacagagacttaaagccagagaacat 2552
||||||||||||||||||||||||||
Sbjct: 4031415 tacagagacttaaagccagagaacat 4031390
Score = 46.1 bits (23), Expect = 0.039
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 1762 acagtaaagaagataagagatgccatagataaccaaacagaagttactgttcagctgata 1821
||||| |||||||| || |||| || ||||||||||| ||||| || |||||||| ||
Sbjct: 16832298 acagtgaagaagattcgaaatgctattgataaccaaaccgaagtgacagttcagctcatc 16832357
Query: 1822 aattatacaaagagcggta 1840
|| || || ||||||||||
Sbjct: 16832358 aactacaccaagagcggta 16832376
Score = 46.1 bits (23), Expect = 0.039
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 2236 tttgccatgaaagctatggataaaagtgtcatgcttaaccgaaacaa 2282
||||| |||||||| ||||| || |||||||||||||||||||||
Sbjct: 16775511 tttgctatgaaagcaatggacaaggctgtcatgcttaaccgaaacaa 16775465
Score = 46.1 bits (23), Expect = 0.039
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 2527 tacagagacttaaagccagagaacatt 2553
|||||||||||||| ||||||||||||
Sbjct: 7285809 tacagagacttaaaaccagagaacatt 7285783
Score = 44.1 bits (22), Expect = 0.16
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2362 cagacaaagacacatatatgtcttat 2387
|||||||| |||||||||||||||||
Sbjct: 16833587 cagacaaaaacacatatatgtcttat 16833612
>gb|AV441447.1|AV441447 AV441447 Arabidopsis thaliana above-ground organ two to six-week old
Arabidopsis thaliana cDNA clone APZ56h09_f 3', mRNA
sequence
Length = 340
Score = 58.0 bits (29), Expect = 1e-005
Identities = 191/245 (77%)
Strand = Plus / Minus
Query: 2236 tttgccatgaaagctatggataaaagtgtcatgcttaaccgaaacaaggtccatagagct 2295
||||| |||||||| ||||| || ||| ||||||||||||||||| || |||||||||
Sbjct: 255 tttgcaatgaaagcaatggacaaggctgttatgcttaaccgaaacaaagtacatagagct 196
Query: 2296 accgctgaacgacaaatccttgatatgttggaccacccattccttccgacattgtatgca 2355
| ||||| || | ||||| ||| || | ||||| || || |||| || | || ||
Sbjct: 195 agagctgagagagagatcctagatttgcttgaccatccttttcttcatgcactctacgct 136
Query: 2356 tcatttcagacaaagacacatatatgtcttattgttgactattgtgctggtggggaactc 2415
|| ||||||||||| ||||||||||||||||| || || | | | || || ||||||
Sbjct: 135 tcttttcagacaaaaacacatatatgtcttataacagattactatccaggaggagaactc 76
Query: 2416 tttatgctccttgataggcaacctatgaaggttctgaaggaggatgcggtcaggttctat 2475
|| |||||| | ||| | ||||||| ||||||||| || || ||||| || || ||||||
Sbjct: 75 ttcatgctcatagatcgccaacctaggaaggttctcaaagaagatgctgtaagattctat 16
Query: 2476 gctgc 2480
|||||
Sbjct: 15 gctgc 11
>gb|BX834773.1|BX834773 BX834773 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH4ZE08 3PRIM, mRNA
sequence
Length = 795
Score = 56.0 bits (28), Expect = 4e-005
Identities = 82/100 (82%)
Strand = Plus / Minus
Query: 2762 ccggagctggccatacgagtgctgtagattggtgggcgctaggaattcttctatatgaga 2821
||||||| || ||||||||||| ||||| |||||||| || || || ||| | ||||| |
Sbjct: 547 ccggagcaggacatacgagtgcagtagactggtgggctcttggtatacttatgtatgaaa 488
Query: 2822 tgttatatggttatacacccttcagagggaaaacaagaca 2861
||||||| || || || || || ||||| |||||||||||
Sbjct: 487 tgttatacggatacactccttttagaggaaaaacaagaca 448
>gb|CB074322.1|CB074322 EST00836 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-CC8 similar to NON-PHOTOTROPIC HYPOCOTYL
1-LIKE, mRNA sequence
Length = 592
Score = 54.0 bits (27), Expect = 2e-004
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 2182 tctggtgatactggcagtgtccacttggtggagttgcttggcacaggtgaatactttgcc 2241
||||||||||||||||||||||| ||||| ||| || ||||| |||||| | ||||
Sbjct: 508 tctggtgatactggcagtgtccatttggttgagctgaagggcacgggtgaactatatgcc 449
Query: 2242 atgaaagctatggataaaa 2260
|||||||| ||||| ||||
Sbjct: 448 atgaaagcaatggagaaaa 430
>gb|U79744.1|ATU79744 Arabidopsis thaliana putative serine/threonine protein kinase
(AtKin7) mRNA, partial cds
Length = 1209
Score = 54.0 bits (27), Expect = 2e-004
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 2182 tctggtgatactggcagtgtccacttggtggagttgcttggcacaggtgaatactttgcc 2241
||||||||||||||||||||||| ||||| ||| || ||||| |||||| | ||||
Sbjct: 78 tctggtgatactggcagtgtccatttggttgagctgaagggcacgggtgaactatatgcc 137
Query: 2242 atgaaagctatggataaaa 2260
|||||||| ||||| ||||
Sbjct: 138 atgaaagcaatggagaaaa 156
>gb|BX839532.1|BX839532 BX839532 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS54ZF01 5PRIM, mRNA
sequence
Length = 1127
Score = 52.0 bits (26), Expect = 6e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2527 tacagagacttaaagccagagaacat 2552
||||||||||||||||||||||||||
Sbjct: 899 tacagagacttaaagccagagaacat 924
>dbj|AB024033.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MBK21
Length = 79125
Score = 52.0 bits (26), Expect = 6e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 2527 tacagagacttaaagccagagaacat 2552
||||||||||||||||||||||||||
Sbjct: 16320 tacagagacttaaagccagagaacat 16295
>gb|BT011689.1| Arabidopsis thaliana At3g12690 gene, complete cds
Length = 2137
Score = 52.0 bits (26), Expect = 6e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2527 tacagagacttaaagccagagaacat 2552
||||||||||||||||||||||||||
Sbjct: 1219 tacagagacttaaagccagagaacat 1244
>gb|BT020332.1| Arabidopsis thaliana At3g12690 gene, complete cds
Length = 1734
Score = 52.0 bits (26), Expect = 6e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2527 tacagagacttaaagccagagaacat 2552
||||||||||||||||||||||||||
Sbjct: 922 tacagagacttaaagccagagaacat 947
>ref|NM_112105.2| Arabidopsis thaliana kinase AT3G12690 transcript variant AT3G12690.1
mRNA, complete cds
Length = 2185
Score = 52.0 bits (26), Expect = 6e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2527 tacagagacttaaagccagagaacat 2552
||||||||||||||||||||||||||
Sbjct: 1232 tacagagacttaaagccagagaacat 1257
>ref|NM_202566.1| Arabidopsis thaliana kinase AT3G12690 transcript variant AT3G12690.2
mRNA, complete cds
Length = 2213
Score = 52.0 bits (26), Expect = 6e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2527 tacagagacttaaagccagagaacat 2552
||||||||||||||||||||||||||
Sbjct: 1260 tacagagacttaaagccagagaacat 1285
>ref|NM_202567.1| Arabidopsis thaliana kinase AT3G12690 transcript variant AT3G12690.3
mRNA, complete cds
Length = 2083
Score = 52.0 bits (26), Expect = 6e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2527 tacagagacttaaagccagagaacat 2552
||||||||||||||||||||||||||
Sbjct: 1130 tacagagacttaaagccagagaacat 1155
>gb|BP788492.1|BP788492 BP788492 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-34-B14 3', mRNA
sequence
Length = 411
Score = 50.1 bits (25), Expect = 0.003
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 2236 tttgccatgaaagctatggataaaagtgtcatgcttaaccgaaacaaggtccatagagct 2295
||||| |||||||| ||||| || ||| ||||||||||||||||| || |||||||||
Sbjct: 132 tttgcaatgaaagcaatggacaaggctgttatgcttaaccgaaacaaagtacatagagct 73
Query: 2296 a 2296
|
Sbjct: 72 a 72
>emb|BX822704.1|CNS0A75G Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB59ZE03 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1298
Score = 46.1 bits (23), Expect = 0.039
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2527 tacagagacttaaagccagagaacatt 2553
|||||||||||||| ||||||||||||
Sbjct: 458 tacagagacttaaaaccagagaacatt 484
>dbj|AB025629.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOE17
Length = 81677
Score = 46.1 bits (23), Expect = 0.039
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 2527 tacagagacttaaagccagagaacatt 2553
|||||||||||||| ||||||||||||
Sbjct: 46366 tacagagacttaaaaccagagaacatt 46340
>emb|AL138657.1|ATF9K21 Arabidopsis thaliana DNA chromosome 3, BAC clone F9K21
Length = 110980
Score = 46.1 bits (23), Expect = 0.039
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 2236 tttgccatgaaagctatggataaaagtgtcatgcttaaccgaaacaa 2282
||||| |||||||| ||||| || |||||||||||||||||||||
Sbjct: 107015 tttgctatgaaagcaatggacaaggctgtcatgcttaaccgaaacaa 106969
>ref|NM_112974.2| Arabidopsis thaliana kinase AT3G20830 mRNA, complete cds
Length = 1298
Score = 46.1 bits (23), Expect = 0.039
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2527 tacagagacttaaagccagagaacatt 2553
|||||||||||||| ||||||||||||
Sbjct: 458 tacagagacttaaaaccagagaacatt 484
>gb|BZ380980.1|BZ380980 SALK_116067.53.80.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_116067.53.80.x,
DNA sequence
Length = 282
Score = 44.1 bits (22), Expect = 0.16
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1687 ttgacagagtattgccgcgaagaaatattgggaagaaa 1724
||||||||||||| ||||| ||||||||||| |||||
Sbjct: 127 ttgacagagtattcacgcgaggaaatattggggagaaa 90
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,647,307
Number of Sequences: 1013581
Number of extensions: 1647307
Number of successful extensions: 143883
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 138221
Number of HSP's gapped (non-prelim): 5644
length of query: 3330
length of database: 908,940,872
effective HSP length: 21
effective length of query: 3309
effective length of database: 887,655,671
effective search space: 2937252615339
effective search space used: 2937252615339
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)