BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3562100.2.1
(759 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV559028.1|AV559028 AV559028 Arabidopsis thaliana green ... 80 6e-013
gb|AY072447.1| Arabidopsis thaliana unknown protein (At2g20... 80 6e-013
gb|AY128911.1| Arabidopsis thaliana unknown protein (At2g20... 80 6e-013
gb|AY084942.1| Arabidopsis thaliana clone 12246 mRNA, compl... 80 6e-013
gb|AC006081.4| Arabidopsis thaliana chromosome 2 clone T2G1... 80 6e-013
ref|NM_127571.2| Arabidopsis thaliana LCV1 AT2G20130 (LCV1)... 80 6e-013
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 80 6e-013
gb|AV785472.1|AV785472 AV785472 RAFL6 Arabidopsis thaliana ... 72 2e-010
gb|AV531552.1|AV531552 AV531552 Arabidopsis thaliana flower... 72 2e-010
gb|AV544391.1|AV544391 AV544391 Arabidopsis thaliana roots ... 72 2e-010
gb|AV559198.1|AV559198 AV559198 Arabidopsis thaliana green ... 72 2e-010
gb|AF410324.1|AF410324 Arabidopsis thaliana At2g20120/T2G17... 72 2e-010
gb|AY093732.1| Arabidopsis thaliana At2g20120/T2G17.8 mRNA,... 72 2e-010
gb|AY084984.1| Arabidopsis thaliana clone 123469 mRNA, comp... 72 2e-010
gb|AY170845.1| Arabidopsis thaliana putative membrane prote... 72 2e-010
emb|BX820138.1|CNS0A9EX Arabidopsis thaliana Full-length cD... 72 2e-010
emb|BX820903.1|CNS0A9OE Arabidopsis thaliana Full-length cD... 72 2e-010
ref|NM_127570.2| Arabidopsis thaliana COV1 (CONTINUOUS VASC... 72 2e-010
gb|AI996841.1|AI996841 701668691 A. thaliana, Columbia Col-... 58 2e-006
gb|CB263161.1|CB263161 32-E9779-008-018-P08-pbl2 MPIZ-ADIS-... 58 2e-006
gb|AY086303.1| Arabidopsis thaliana clone 23672 mRNA, compl... 58 2e-006
emb|BX813825.1|CNS0ADOW Arabidopsis thaliana Full-length cD... 58 2e-006
dbj|AK176692.1| Arabidopsis thaliana mRNA, complete cds, cl... 58 2e-006
dbj|AK176760.1| Arabidopsis thaliana mRNA, complete cds, cl... 58 2e-006
ref|NM_103466.3| Arabidopsis thaliana LCV2 AT1G43130 (LCV2)... 58 2e-006
gb|AC026757.12|AC026757 Arabidopsis thaliana chromosome 1 B... 54 4e-005
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 54 4e-005
gb|AC005687.1| Arabidopsis thaliana BAC F1I21 from chromoso... 54 4e-005
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 54 4e-005
gb|CW798252.1|CW798252 WiscDsLox397F06 Arabidopsis thaliana... 42 0.14
>gb|AV559028.1|AV559028 AV559028 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ109h08F 3', mRNA sequence
Length = 583
Score = 79.8 bits (40), Expect = 6e-013
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| ||||||||||||||||| |||||
Sbjct: 496 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatatgcatttggcttcatt 437
Query: 111 acatcaac 118
||||||||
Sbjct: 436 acatcaac 429
>gb|AY072447.1| Arabidopsis thaliana unknown protein (At2g20130) mRNA, complete cds
Length = 1084
Score = 79.8 bits (40), Expect = 6e-013
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| ||||||||||||||||| |||||
Sbjct: 617 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatatgcatttggcttcatt 676
Query: 111 acatcaac 118
||||||||
Sbjct: 677 acatcaac 684
>gb|AY128911.1| Arabidopsis thaliana unknown protein (At2g20130) mRNA, complete cds
Length = 850
Score = 79.8 bits (40), Expect = 6e-013
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| ||||||||||||||||| |||||
Sbjct: 478 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatatgcatttggcttcatt 537
Query: 111 acatcaac 118
||||||||
Sbjct: 538 acatcaac 545
>gb|AY084942.1| Arabidopsis thaliana clone 12246 mRNA, complete sequence
Length = 1111
Score = 79.8 bits (40), Expect = 6e-013
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| ||||||||||||||||| |||||
Sbjct: 664 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatatgcatttggcttcatt 723
Query: 111 acatcaac 118
||||||||
Sbjct: 724 acatcaac 731
>gb|AC006081.4| Arabidopsis thaliana chromosome 2 clone T2G17 map mi148, complete
sequence
Length = 97814
Score = 79.8 bits (40), Expect = 6e-013
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| ||||||||||||||||| |||||
Sbjct: 27570 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatatgcatttggcttcatt 27629
Query: 111 acatcaac 118
||||||||
Sbjct: 27630 acatcaac 27637
Score = 71.9 bits (36), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| |||||||| |||||||| |||||
Sbjct: 30625 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatacgcatttggcttcatt 30684
Query: 111 acatcaac 118
||||||||
Sbjct: 30685 acatcaac 30692
>ref|NM_127571.2| Arabidopsis thaliana LCV1 AT2G20130 (LCV1) mRNA, complete cds
Length = 1203
Score = 79.8 bits (40), Expect = 6e-013
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| ||||||||||||||||| |||||
Sbjct: 664 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatatgcatttggcttcatt 723
Query: 111 acatcaac 118
||||||||
Sbjct: 724 acatcaac 731
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 79.8 bits (40), Expect = 6e-013
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| ||||||||||||||||| |||||
Sbjct: 8698243 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatatgcatttggcttcatt 8698184
Query: 111 acatcaac 118
||||||||
Sbjct: 8698183 acatcaac 8698176
Score = 71.9 bits (36), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| |||||||| |||||||| |||||
Sbjct: 8695188 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatacgcatttggcttcatt 8695129
Query: 111 acatcaac 118
||||||||
Sbjct: 8695128 acatcaac 8695121
>gb|AV785472.1|AV785472 AV785472 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-16-K21 3',
mRNA sequence
Length = 702
Score = 71.9 bits (36), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| |||||||| |||||||| |||||
Sbjct: 412 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatacgcatttggcttcatt 353
Query: 111 acatcaac 118
||||||||
Sbjct: 352 acatcaac 345
>gb|AV531552.1|AV531552 AV531552 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB025g07F 3', mRNA sequence
Length = 602
Score = 71.9 bits (36), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| |||||||| |||||||| |||||
Sbjct: 514 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatacgcatttggcttcatt 455
Query: 111 acatcaac 118
||||||||
Sbjct: 454 acatcaac 447
>gb|AV544391.1|AV544391 AV544391 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ42a07F 3', mRNA sequence
Length = 447
Score = 71.9 bits (36), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| |||||||| |||||||| |||||
Sbjct: 442 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatacgcatttggcttcatt 383
Query: 111 acatcaac 118
||||||||
Sbjct: 382 acatcaac 375
>gb|AV559198.1|AV559198 AV559198 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ112h04F 3', mRNA sequence
Length = 486
Score = 71.9 bits (36), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| |||||||| |||||||| |||||
Sbjct: 482 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatacgcatttggcttcatt 423
Query: 111 acatcaac 118
||||||||
Sbjct: 422 acatcaac 415
>gb|AF410324.1|AF410324 Arabidopsis thaliana At2g20120/T2G17.8 mRNA, complete cds
Length = 1069
Score = 71.9 bits (36), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| |||||||| |||||||| |||||
Sbjct: 658 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatacgcatttggcttcatt 717
Query: 111 acatcaac 118
||||||||
Sbjct: 718 acatcaac 725
>gb|AY093732.1| Arabidopsis thaliana At2g20120/T2G17.8 mRNA, complete cds
Length = 807
Score = 71.9 bits (36), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| |||||||| |||||||| |||||
Sbjct: 508 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatacgcatttggcttcatt 567
Query: 111 acatcaac 118
||||||||
Sbjct: 568 acatcaac 575
>gb|AY084984.1| Arabidopsis thaliana clone 123469 mRNA, complete sequence
Length = 1165
Score = 71.9 bits (36), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| |||||||| |||||||| |||||
Sbjct: 657 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatacgcatttggcttcatt 716
Query: 111 acatcaac 118
||||||||
Sbjct: 717 acatcaac 724
>gb|AY170845.1| Arabidopsis thaliana putative membrane protein COV (COV) mRNA,
complete cds
Length = 1127
Score = 71.9 bits (36), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| |||||||| |||||||| |||||
Sbjct: 636 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatacgcatttggcttcatt 695
Query: 111 acatcaac 118
||||||||
Sbjct: 696 acatcaac 703
>emb|BX820138.1|CNS0A9EX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS78ZH10 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1014
Score = 71.9 bits (36), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| |||||||| |||||||| |||||
Sbjct: 574 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatacgcatttggcttcatt 633
Query: 111 acatcaac 118
||||||||
Sbjct: 634 acatcaac 641
>emb|BX820903.1|CNS0A9OE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH7ZG10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1445
Score = 71.9 bits (36), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| |||||||| |||||||| |||||
Sbjct: 901 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatacgcatttggcttcatt 960
Query: 111 acatcaac 118
||||||||
Sbjct: 961 acatcaac 968
>ref|NM_127570.2| Arabidopsis thaliana COV1 (CONTINUOUS VASCULAR RING) AT2G20120
(COV1) mRNA, complete cds
Length = 1170
Score = 71.9 bits (36), Expect = 2e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcata 110
||||| ||||| |||||||| || ||||||||||| |||||||| |||||||| |||||
Sbjct: 657 ttcaaggaagttgcaatcatcaggcatccccgtgtaggtgaatacgcatttggcttcatt 716
Query: 111 acatcaac 118
||||||||
Sbjct: 717 acatcaac 724
>gb|AI996841.1|AI996841 701668691 A. thaliana, Columbia Col-0, root-1 Arabidopsis thaliana
cDNA clone 701668691, mRNA sequence
Length = 551
Score = 58.0 bits (29), Expect = 2e-006
Identities = 104/129 (80%)
Strand = Plus / Minus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
||||| ||||||||||| |||| || ||| |||||||||| ||||||||||| || |||
Sbjct: 417 aaagaggtagcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattaca 358
Query: 114 tcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtgcca 173
||| | || |||||||| ||| | || || ||||| || |||||||| ||||| |||
Sbjct: 357 tcatcggtgacacttcagactgaccatggagaagaagagttatgtagtgtgtatgtacca 298
Query: 174 accaatcat 182
|| ||||||
Sbjct: 297 acgaatcat 289
>gb|CB263161.1|CB263161 32-E9779-008-018-P08-pbl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767P0818Q 5-PRIME, mRNA sequence
Length = 664
Score = 58.0 bits (29), Expect = 2e-006
Identities = 104/129 (80%)
Strand = Plus / Plus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
||||| ||||||||||| |||| || ||| |||||||||| ||||||||||| || |||
Sbjct: 194 aaagaggtagcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattaca 253
Query: 114 tcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtgcca 173
||| | || |||||||| ||| | || || ||||| || |||||||| ||||| |||
Sbjct: 254 tcatcggtgacacttcagactgaccatggagaagaagagttatgtagtgtgtatgtacca 313
Query: 174 accaatcat 182
|| ||||||
Sbjct: 314 acgaatcat 322
>gb|AY086303.1| Arabidopsis thaliana clone 23672 mRNA, complete sequence
Length = 995
Score = 58.0 bits (29), Expect = 2e-006
Identities = 104/129 (80%)
Strand = Plus / Plus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
||||| ||||||||||| |||| || ||| |||||||||| ||||||||||| || |||
Sbjct: 534 aaagaggtagcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattaca 593
Query: 114 tcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtgcca 173
||| | || |||||||| ||| | || || ||||| || |||||||| ||||| |||
Sbjct: 594 tcatcggtgacacttcagactgaccatggagaagaagagttatgtagtgtgtatgtacca 653
Query: 174 accaatcat 182
|| ||||||
Sbjct: 654 acgaatcat 662
>emb|BX813825.1|CNS0ADOW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB41ZB12 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1277
Score = 58.0 bits (29), Expect = 2e-006
Identities = 104/129 (80%)
Strand = Plus / Plus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
||||| ||||||||||| |||| || ||| |||||||||| ||||||||||| || |||
Sbjct: 505 aaagaggtagcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattaca 564
Query: 114 tcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtgcca 173
||| | || |||||||| ||| | || || ||||| || |||||||| ||||| |||
Sbjct: 565 tcatcggtgacacttcagactgaccatggagaagaagagttatgtagtgtgtatgtacca 624
Query: 174 accaatcat 182
|| ||||||
Sbjct: 625 acgaatcat 633
>dbj|AK176692.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-23-L15
Length = 999
Score = 58.0 bits (29), Expect = 2e-006
Identities = 104/129 (80%)
Strand = Plus / Plus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
||||| ||||||||||| |||| || ||| |||||||||| ||||||||||| || |||
Sbjct: 544 aaagaggtagcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattaca 603
Query: 114 tcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtgcca 173
||| | || |||||||| ||| | || || ||||| || |||||||| ||||| |||
Sbjct: 604 tcatcggtgacacttcagactgaccatggagaagaagagttatgtagtgtgtatgtacca 663
Query: 174 accaatcat 182
|| ||||||
Sbjct: 664 acgaatcat 672
>dbj|AK176760.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-30-F01
Length = 995
Score = 58.0 bits (29), Expect = 2e-006
Identities = 104/129 (80%)
Strand = Plus / Plus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
||||| ||||||||||| |||| || ||| |||||||||| ||||||||||| || |||
Sbjct: 544 aaagaggtagcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattaca 603
Query: 114 tcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtgcca 173
||| | || |||||||| ||| | || || ||||| || |||||||| ||||| |||
Sbjct: 604 tcatcggtgacacttcagactgaccatggagaagaagagttatgtagtgtgtatgtacca 663
Query: 174 accaatcat 182
|| ||||||
Sbjct: 664 acgaatcat 672
>ref|NM_103466.3| Arabidopsis thaliana LCV2 AT1G43130 (LCV2) mRNA, complete cds
Length = 1304
Score = 58.0 bits (29), Expect = 2e-006
Identities = 104/129 (80%)
Strand = Plus / Plus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
||||| ||||||||||| |||| || ||| |||||||||| ||||||||||| || |||
Sbjct: 534 aaagaggtagcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattaca 593
Query: 114 tcaaccatggttcttcagacagacaaaggtgatgaagaattgtgtagtgtttatgtgcca 173
||| | || |||||||| ||| | || || ||||| || |||||||| ||||| |||
Sbjct: 594 tcatcggtgacacttcagactgaccatggagaagaagagttatgtagtgtgtatgtacca 653
Query: 174 accaatcat 182
|| ||||||
Sbjct: 654 acgaatcat 662
>gb|AC026757.12|AC026757 Arabidopsis thaliana chromosome 1 BAC F2H10 genomic sequence, complete
sequence
Length = 95870
Score = 54.0 bits (27), Expect = 4e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
||||| ||||||||||| |||| || ||| |||||||||| ||||||||||| || |||
Sbjct: 92026 aaagaggtagcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattaca 91967
Query: 114 tca 116
|||
Sbjct: 91966 tca 91964
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 54.0 bits (27), Expect = 4e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
||||| ||||||||||| |||| || ||| |||||||||| ||||||||||| || |||
Sbjct: 715480 aaagaggtagcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattaca 715421
Query: 114 tca 116
|||
Sbjct: 715420 tca 715418
>gb|AC005687.1| Arabidopsis thaliana BAC F1I21 from chromosome 1, near 59 cM,
complete sequence
Length = 129271
Score = 54.0 bits (27), Expect = 4e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
||||| ||||||||||| |||| || ||| |||||||||| ||||||||||| || |||
Sbjct: 1156 aaagaggtagcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattaca 1097
Query: 114 tca 116
|||
Sbjct: 1096 tca 1094
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 54.0 bits (27), Expect = 4e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
||||| ||||||||||| |||| || ||| |||||||||| ||||||||||| || |||
Sbjct: 16231590 aaagaggtagcaatcatccgtcaccctcgtattggtgaatacgcatttggatttattaca 16231531
Query: 114 tca 116
|||
Sbjct: 16231530 tca 16231528
>gb|CW798252.1|CW798252 WiscDsLox397F06 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 1132
Score = 42.1 bits (21), Expect = 0.14
Identities = 52/63 (82%)
Strand = Plus / Minus
Query: 54 aaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcataaca 113
||||| | ||||||||| |||| || ||| |||| ||||| ||||||||||| || |||
Sbjct: 848 aaagaggnagcaatcatccgtcaccctcgtattggngaatacgcatttggatttattaca 789
Query: 114 tca 116
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Sbjct: 788 tca 786
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 334,189
Number of Sequences: 1013581
Number of extensions: 334189
Number of successful extensions: 23342
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22902
Number of HSP's gapped (non-prelim): 440
length of query: 759
length of database: 908,940,872
effective HSP length: 20
effective length of query: 739
effective length of database: 888,669,252
effective search space: 656726577228
effective search space used: 656726577228
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)