BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3536697.2.1
(651 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV782529.1|AV782529 AV782529 RAFL4 Arabidopsis thaliana ... 90 6e-016
gb|CB185735.2|CB185735 EST00661 Arabidopsis avirulent Pseud... 90 6e-016
gb|AV521021.1|AV521021 AV521021 Arabidopsis thaliana aboveg... 90 6e-016
gb|AV533768.1|AV533768 AV533768 Arabidopsis thaliana flower... 90 6e-016
gb|AV537418.1|AV537418 AV537418 Arabidopsis thaliana roots ... 90 6e-016
gb|AV553003.1|AV553003 AV553003 Arabidopsis thaliana roots ... 90 6e-016
emb|Z49239.1|ATD18MR A.thaliana mRNA for putative dTDP-gluc... 90 6e-016
gb|AY050389.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRN... 90 6e-016
gb|AF361617.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRN... 90 6e-016
emb|AX505495.1| Sequence 190 from Patent WO0216655 90 6e-016
gb|AY143897.1| Arabidopsis thaliana At3g62830/F26K9_260 mRN... 90 6e-016
gb|AF387788.1| Arabidopsis thaliana UDP-glucuronic acid dec... 90 6e-016
emb|BX825822.1|CNS0A4P6 Arabidopsis thaliana Full-length cD... 90 6e-016
gb|BT022016.1| Arabidopsis thaliana At2g47650 gene, complet... 90 6e-016
ref|NM_130333.1| Arabidopsis thaliana UXS4 (UDP-XYLOSE SYNT... 90 6e-016
ref|NM_116148.1| Arabidopsis thaliana UXS2 (UDP-GLUCURONIC ... 90 6e-016
gb|AV541133.1|AV541133 AV541133 Arabidopsis thaliana roots ... 82 1e-013
gb|N37324.1|N37324 18551 Lambda-PRL2 Arabidopsis thaliana c... 78 2e-012
gb|AV538824.1|AV538824 AV538824 Arabidopsis thaliana roots ... 76 8e-012
gb|AV541838.1|AV541838 AV541838 Arabidopsis thaliana roots ... 76 8e-012
gb|CB260122.1|CB260122 94-E9601-013-003-K24-t7r MPIZ-ADIS-0... 68 2e-009
gb|N38350.1|N38350 19577 Lambda-PRL2 Arabidopsis thaliana c... 64 3e-008
gb|AV549274.1|AV549274 AV549274 Arabidopsis thaliana roots ... 62 1e-007
gb|AV550208.1|AV550208 AV550208 Arabidopsis thaliana roots ... 58 2e-006
gb|AC002535.3| Arabidopsis thaliana chromosome 2 clone T30B... 58 2e-006
gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A... 58 2e-006
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 58 2e-006
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 52 1e-004
emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome ... 52 1e-004
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 52 1e-004
gb|AV782290.1|AV782290 AV782290 RAFL4 Arabidopsis thaliana ... 50 5e-004
gb|AY065075.1| Arabidopsis thaliana dTDP-glucose 4-6-dehydr... 50 5e-004
gb|BT003355.1| Arabidopsis thaliana dTDP-glucose 4-6-dehydr... 50 5e-004
emb|BX822635.1|CNS0A7MG Arabidopsis thaliana Full-length cD... 50 5e-004
emb|BX823176.1|CNS0A7M4 Arabidopsis thaliana Full-length cD... 50 5e-004
ref|NM_115212.2| Arabidopsis thaliana UXS1 (UDP-GLUCURONIC ... 50 5e-004
gb|AV788561.1|AV788561 AV788561 RAFL6 Arabidopsis thaliana ... 44 0.030
gb|AV814478.1|AV814478 AV814478 RAFL9 Arabidopsis thaliana ... 44 0.030
gb|AV567402.1|AV567402 AV567402 Arabidopsis thaliana green ... 44 0.030
gb|BP565000.1|BP565000 BP565000 RAFL14 Arabidopsis thaliana... 44 0.030
gb|BP571979.1|BP571979 BP571979 RAFL14 Arabidopsis thaliana... 44 0.030
gb|BP575347.1|BP575347 BP575347 RAFL14 Arabidopsis thaliana... 44 0.030
gb|BP582514.1|BP582514 BP582514 RAFL14 Arabidopsis thaliana... 44 0.030
gb|BP585895.1|BP585895 BP585895 RAFL15 Arabidopsis thaliana... 44 0.030
gb|AF387787.1| Arabidopsis thaliana UDP-glucuronic acid dec... 44 0.030
emb|AL132966.1|ATF4P12 Arabidopsis thaliana DNA chromosome ... 44 0.030
ref|NM_180363.1| Arabidopsis thaliana UXS1 (UDP-GLUCURONIC ... 44 0.030
gb|BX834349.1|BX834349 BX834349 Arabidopsis thaliana Adult ... 42 0.12
gb|BP643420.1|BP643420 BP643420 RAFL19 Arabidopsis thaliana... 42 0.12
gb|BP647909.1|BP647909 BP647909 RAFL19 Arabidopsis thaliana... 42 0.12
emb|BX823214.1|CNS0A7KG Arabidopsis thaliana Full-length cD... 42 0.12
gb|AI100480.1|AI100480 34855 Lambda-PRL2 Arabidopsis thalia... 40 0.46
gb|AV799638.1|AV799638 AV799638 RAFL9 Arabidopsis thaliana ... 40 0.46
gb|CD530058.1|CD530058 27F15 Arabidopsis Leaf Senescence Li... 40 0.46
gb|AV439961.1|AV439961 AV439961 Arabidopsis thaliana above-... 40 0.46
gb|BP593145.1|BP593145 BP593145 RAFL15 Arabidopsis thaliana... 40 0.46
>gb|AV782529.1|AV782529 AV782529 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-18-J05 3',
mRNA sequence
Length = 689
Score = 89.7 bits (45), Expect = 6e-016
Identities = 132/161 (81%)
Strand = Plus / Minus
Query: 27 gagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatgtctcagat 86
||||||||||| || ||||||||||| |||||||||||||| || || | |||||| |||
Sbjct: 521 gagcctttgactgtttatggtgatggtaagcagactaggagtttccagtttgtctctgat 462
Query: 87 ttggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggc 146
|||||||||| ||||||| | | ||||| || || || | || || || ||||| ||
Sbjct: 461 ctggtggaaggtctgatgaggttgatggagggagaacatgtcggtccatttaaccttggt 402
Query: 147 aaccctggagaattcagcatgctggagctggctaaggtggt 187
||||| || ||||||| |||||| ||||| |||||||||||
Sbjct: 401 aaccccggtgaattcaccatgctcgagctcgctaaggtggt 361
>gb|CB185735.2|CB185735 EST00661 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone RPM5-E9 similar
to dTDP-glucose 4-6-dehydratase homolog, mRNA sequence
Length = 672
Score = 89.7 bits (45), Expect = 6e-016
Identities = 150/185 (81%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||| ||||| || ||||| ||||| ||||| || || |||||||| |||||||| |||
Sbjct: 117 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 176
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||| ||| || ||| |||| ||||| |||||| || |||||||| || ||
Sbjct: 177 agtttccaatttgtttctgatctggttgaaggtttgatgagactgatggaaggagaacat 236
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| || || ||||||||||| |||||||| ||||||| ||||| ||||| |||||||||
Sbjct: 237 gtcggcccattcaacctcggtaaccctggtgaattcatgatgctcgagctcgctaaggtg 296
Query: 186 gtcca 190
|||||
Sbjct: 297 gtcca 301
>gb|AV521021.1|AV521021 AV521021 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ41d10F 3', mRNA
sequence
Length = 635
Score = 89.7 bits (45), Expect = 6e-016
Identities = 132/161 (81%)
Strand = Plus / Minus
Query: 27 gagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatgtctcagat 86
||||||||||| || ||||||||||| |||||||||||||| || || | |||||| |||
Sbjct: 467 gagcctttgactgtttatggtgatggtaagcagactaggagtttccagtttgtctctgat 408
Query: 87 ttggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggc 146
|||||||||| ||||||| | | ||||| || || || | || || || ||||| ||
Sbjct: 407 ctggtggaaggtctgatgaggttgatggagggagaacatgtcggtccatttaaccttggt 348
Query: 147 aaccctggagaattcagcatgctggagctggctaaggtggt 187
||||| || ||||||| |||||| ||||| |||||||||||
Sbjct: 347 aaccccggtgaattcaccatgctcgagctcgctaaggtggt 307
>gb|AV533768.1|AV533768 AV533768 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB067e08F 3', mRNA sequence
Length = 549
Score = 89.7 bits (45), Expect = 6e-016
Identities = 132/161 (81%)
Strand = Plus / Minus
Query: 27 gagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatgtctcagat 86
||||||||||| || ||||||||||| |||||||||||||| || || | |||||| |||
Sbjct: 524 gagcctttgactgtttatggtgatggtaagcagactaggagtttccagtttgtctctgat 465
Query: 87 ttggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggc 146
|||||||||| ||||||| | | ||||| || || || | || || || ||||| ||
Sbjct: 464 ctggtggaaggtctgatgaggttgatggagggagaacatgtcggtccatttaaccttggt 405
Query: 147 aaccctggagaattcagcatgctggagctggctaaggtggt 187
||||| || ||||||| |||||| ||||| |||||||||||
Sbjct: 404 aaccccggtgaattcaccatgctcgagctcgctaaggtggt 364
>gb|AV537418.1|AV537418 AV537418 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ05f08F 3', mRNA sequence
Length = 636
Score = 89.7 bits (45), Expect = 6e-016
Identities = 132/161 (81%)
Strand = Plus / Minus
Query: 27 gagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatgtctcagat 86
||||||||||| || ||||||||||| |||||||||||||| || || | |||||| |||
Sbjct: 468 gagcctttgactgtttatggtgatggtaagcagactaggagtttccagtttgtctctgat 409
Query: 87 ttggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggc 146
|||||||||| ||||||| | | ||||| || || || | || || || ||||| ||
Sbjct: 408 ctggtggaaggtctgatgaggttgatggagggagaacatgtcggtccatttaaccttggt 349
Query: 147 aaccctggagaattcagcatgctggagctggctaaggtggt 187
||||| || ||||||| |||||| ||||| |||||||||||
Sbjct: 348 aaccccggtgaattcaccatgctcgagctcgctaaggtggt 308
>gb|AV553003.1|AV553003 AV553003 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ51d02R 5', mRNA sequence
Length = 542
Score = 89.7 bits (45), Expect = 6e-016
Identities = 150/185 (81%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||| ||||| || ||||| ||||| ||||| || || |||||||| |||||||| |||
Sbjct: 288 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 347
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||| ||| || ||| |||| ||||| |||||| || |||||||| || ||
Sbjct: 348 agtttccaatttgtttctgatctggttgaaggtttgatgagactgatggaaggagaacat 407
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| || || ||||||||||| |||||||| ||||||| ||||| ||||| |||||||||
Sbjct: 408 gtcggcccattcaacctcggtaaccctggtgaattcacgatgctcgagctcgctaaggtg 467
Query: 186 gtcca 190
|||||
Sbjct: 468 gtcca 472
>emb|Z49239.1|ATD18MR A.thaliana mRNA for putative dTDP-glucose 4-6-dehydratases
Length = 1660
Score = 89.7 bits (45), Expect = 6e-016
Identities = 150/185 (81%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||| ||||| || ||||| ||||| ||||| || || |||||||| |||||||| |||
Sbjct: 1061 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 1120
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||| ||| || ||| |||| ||||| |||||| || |||||||| || ||
Sbjct: 1121 agtttccaatttgtttctgatctggttgaaggtttgatgagactgatggaaggtgaacat 1180
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| || || ||||||||||| |||||||| ||||||| ||||| ||||| |||||||||
Sbjct: 1181 gtcggcccattcaacctcggtaaccctggtgaattcacgatgctcgagctcgctaaggtg 1240
Query: 186 gtcca 190
|||||
Sbjct: 1241 gtcca 1245
>gb|AY050389.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, complete cds
Length = 1701
Score = 89.7 bits (45), Expect = 6e-016
Identities = 150/185 (81%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||| ||||| || ||||| ||||| ||||| || || |||||||| |||||||| |||
Sbjct: 1075 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 1134
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||| ||| || ||| |||| ||||| |||||| || |||||||| || ||
Sbjct: 1135 agtttccaatttgtttctgatctggttgaaggtttgatgagactgatggaaggagaacat 1194
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| || || ||||||||||| |||||||| ||||||| ||||| ||||| |||||||||
Sbjct: 1195 gtcggcccattcaacctcggtaaccctggtgaattcacgatgctcgagctcgctaaggtg 1254
Query: 186 gtcca 190
|||||
Sbjct: 1255 gtcca 1259
>gb|AF361617.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, complete cds
Length = 1663
Score = 89.7 bits (45), Expect = 6e-016
Identities = 150/185 (81%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||| ||||| || ||||| ||||| ||||| || || |||||||| |||||||| |||
Sbjct: 1075 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 1134
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||| ||| || ||| |||| ||||| |||||| || |||||||| || ||
Sbjct: 1135 agtttccaatttgtttctgatctggttgaaggtttgatgagactgatggaaggtgaacat 1194
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| || || ||||||||||| |||||||| ||||||| ||||| ||||| |||||||||
Sbjct: 1195 gtcggcccattcaacctcggtaaccctggtgaattcacgatgctcgagctcgctaaggtg 1254
Query: 186 gtcca 190
|||||
Sbjct: 1255 gtcca 1259
>emb|AX505495.1| Sequence 190 from Patent WO0216655
Length = 1332
Score = 89.7 bits (45), Expect = 6e-016
Identities = 132/161 (81%)
Strand = Plus / Plus
Query: 27 gagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatgtctcagat 86
||||||||||| || ||||||||||| |||||||||||||| || || | |||||| |||
Sbjct: 949 gagcctttgactgtttatggtgatggtaagcagactaggagtttccagtttgtctctgat 1008
Query: 87 ttggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggc 146
|||||||||| ||||||| | | ||||| || || || | || || || ||||| ||
Sbjct: 1009 ctggtggaaggtctgatgaggttgatggagggagaacatgtcggtccatttaaccttggt 1068
Query: 147 aaccctggagaattcagcatgctggagctggctaaggtggt 187
||||| || ||||||| |||||| ||||| |||||||||||
Sbjct: 1069 aaccccggtgaattcaccatgctcgagctcgctaaggtggt 1109
>gb|AY143897.1| Arabidopsis thaliana At3g62830/F26K9_260 mRNA, complete cds
Length = 1338
Score = 89.7 bits (45), Expect = 6e-016
Identities = 150/185 (81%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||| ||||| || ||||| ||||| ||||| || || |||||||| |||||||| |||
Sbjct: 922 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 981
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||| ||| || ||| |||| ||||| |||||| || |||||||| || ||
Sbjct: 982 agtttccaatttgtttctgatctggttgaaggtttgatgagactgatggaaggagaacat 1041
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| || || ||||||||||| |||||||| ||||||| ||||| ||||| |||||||||
Sbjct: 1042 gtcggcccattcaacctcggtaaccctggtgaattcacgatgctcgagctcgctaaggtg 1101
Query: 186 gtcca 190
|||||
Sbjct: 1102 gtcca 1106
>gb|AF387788.1| Arabidopsis thaliana UDP-glucuronic acid decarboxylase (UXS2) mRNA,
complete cds
Length = 1338
Score = 89.7 bits (45), Expect = 6e-016
Identities = 150/185 (81%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||| ||||| || ||||| ||||| ||||| || || |||||||| |||||||| |||
Sbjct: 922 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 981
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||| ||| || ||| |||| ||||| |||||| || |||||||| || ||
Sbjct: 982 agtttccaatttgtttctgatctggttgaaggtttgatgagactgatggaaggtgaacat 1041
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| || || ||||||||||| |||||||| ||||||| ||||| ||||| |||||||||
Sbjct: 1042 gtcggcccattcaacctcggtaaccctggtgaattcacgatgctcgagctcgctaaggtg 1101
Query: 186 gtcca 190
|||||
Sbjct: 1102 gtcca 1106
>emb|BX825822.1|CNS0A4P6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL65ZB07 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 923
Score = 89.7 bits (45), Expect = 6e-016
Identities = 150/185 (81%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||| ||||| || ||||| ||||| ||||| || || |||||||| |||||||| |||
Sbjct: 293 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 352
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||| ||| || ||| |||| ||||| |||||| || |||||||| || ||
Sbjct: 353 agtttccaatttgtttctgatctggttgaaggtttgatgagactgatggaaggagaacat 412
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| || || ||||||||||| |||||||| ||||||| ||||| ||||| |||||||||
Sbjct: 413 gtcggcccattcaacctcggtaaccctggtgaattcacgatgctcgagctcgctaaggtg 472
Query: 186 gtcca 190
|||||
Sbjct: 473 gtcca 477
>gb|BT022016.1| Arabidopsis thaliana At2g47650 gene, complete cds
Length = 1480
Score = 89.7 bits (45), Expect = 6e-016
Identities = 132/161 (81%)
Strand = Plus / Plus
Query: 27 gagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatgtctcagat 86
||||||||||| || ||||||||||| |||||||||||||| || || | |||||| |||
Sbjct: 961 gagcctttgactgtttatggtgatggtaagcagactaggagtttccagtttgtctctgat 1020
Query: 87 ttggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggc 146
|||||||||| ||||||| | | ||||| || || || | || || || ||||| ||
Sbjct: 1021 ctggtggaaggtctgatgaggttgatggagggagaacatgtcggtccatttaaccttggt 1080
Query: 147 aaccctggagaattcagcatgctggagctggctaaggtggt 187
||||| || ||||||| |||||| ||||| |||||||||||
Sbjct: 1081 aaccccggtgaattcaccatgctcgagctcgctaaggtggt 1121
>ref|NM_130333.1| Arabidopsis thaliana UXS4 (UDP-XYLOSE SYNTHASE 4); catalytic
AT2G47650 (UXS4) mRNA, complete cds
Length = 1529
Score = 89.7 bits (45), Expect = 6e-016
Identities = 132/161 (81%)
Strand = Plus / Plus
Query: 27 gagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatgtctcagat 86
||||||||||| || ||||||||||| |||||||||||||| || || | |||||| |||
Sbjct: 1042 gagcctttgactgtttatggtgatggtaagcagactaggagtttccagtttgtctctgat 1101
Query: 87 ttggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacctcggc 146
|||||||||| ||||||| | | ||||| || || || | || || || ||||| ||
Sbjct: 1102 ctggtggaaggtctgatgaggttgatggagggagaacatgtcggtccatttaaccttggt 1161
Query: 147 aaccctggagaattcagcatgctggagctggctaaggtggt 187
||||| || ||||||| |||||| ||||| |||||||||||
Sbjct: 1162 aaccccggtgaattcaccatgctcgagctcgctaaggtggt 1202
>ref|NM_116148.1| Arabidopsis thaliana UXS2 (UDP-GLUCURONIC ACID DECARBOXYLASE 2);
catalytic/ dTDP-glucose 4,6-dehydratase AT3G62830 (UXS2)
mRNA, complete cds
Length = 1338
Score = 89.7 bits (45), Expect = 6e-016
Identities = 150/185 (81%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||| ||||| || ||||| ||||| ||||| || || |||||||| |||||||| |||
Sbjct: 922 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 981
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||| ||| || ||| |||| ||||| |||||| || |||||||| || ||
Sbjct: 982 agtttccaatttgtttctgatctggttgaaggtttgatgagactgatggaaggagaacat 1041
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| || || ||||||||||| |||||||| ||||||| ||||| ||||| |||||||||
Sbjct: 1042 gtcggcccattcaacctcggtaaccctggtgaattcacgatgctcgagctcgctaaggtg 1101
Query: 186 gtcca 190
|||||
Sbjct: 1102 gtcca 1106
>gb|AV541133.1|AV541133 AV541133 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ16f09F 3', mRNA sequence
Length = 594
Score = 81.8 bits (41), Expect = 1e-013
Identities = 149/185 (80%)
Strand = Plus / Minus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||| ||||| || ||||| ||||| ||||| || || ||||||| |||||||| |||
Sbjct: 558 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgagaagcagacaagg 499
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||| ||| || ||| |||| ||||| |||||| || |||||||| || ||
Sbjct: 498 agtttccaatttgtttctgatctggttgaaggtttgatgagactgatggaaggagaacat 439
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| || || ||||||||||| |||||||| ||||||| ||||| ||||| |||||||||
Sbjct: 438 gtcggcccattcaacctcggtaaccctggtgaattcacgatgctcgagctcgctaaggtg 379
Query: 186 gtcca 190
|||||
Sbjct: 378 gtcca 374
>gb|N37324.1|N37324 18551 Lambda-PRL2 Arabidopsis thaliana cDNA clone 209L6T7, mRNA
sequence
Length = 541
Score = 77.8 bits (39), Expect = 2e-012
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 27 gagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatgtctcagat 86
||||||||||| || ||||||||||| |||||||||||||| || || | |||||| |||
Sbjct: 263 gagcctttgactgtttatggtgatggtaagcagactaggagtttccagtttgtctctgat 322
Query: 87 ttggtggaagggctgatga 105
|||||||||| |||||||
Sbjct: 323 ctggtggaaggtctgatga 341
>gb|AV538824.1|AV538824 AV538824 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ121h03F 3', mRNA sequence
Length = 596
Score = 75.8 bits (38), Expect = 8e-012
Identities = 119/146 (81%)
Strand = Plus / Minus
Query: 45 ggtgatggcaagcagactaggagctttcaatatgtctcagatttggtggaagggctgatg 104
|||||||| |||||||| ||||| || |||| ||| || ||| |||| ||||| |||||
Sbjct: 584 ggtgatgggaagcagacaaggagtttccaatttgtttctgatctggttgaaggtttgatg 525
Query: 105 aagctcatggaaggggagcacattgggccgttcaacctcggcaaccctggagaattcagc 164
| || |||||||| || || | || || ||||||||||| |||||||| |||||||
Sbjct: 524 agactgatggaaggagaacatgtcggcccattcaacctcggtaaccctggtgaattcacg 465
Query: 165 atgctggagctggctaaggtggtcca 190
||||| ||||| ||||||||||||||
Sbjct: 464 atgctcgagctcgctaaggtggtcca 439
>gb|AV541838.1|AV541838 AV541838 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ172b02F 3', mRNA sequence
Length = 570
Score = 75.8 bits (38), Expect = 8e-012
Identities = 119/146 (81%)
Strand = Plus / Minus
Query: 45 ggtgatggcaagcagactaggagctttcaatatgtctcagatttggtggaagggctgatg 104
|||||||| |||||||| ||||| || |||| ||| || ||| |||| ||||| |||||
Sbjct: 570 ggtgatgggaagcagacaaggagtttccaatttgtttctgatctggttgaaggtttgatg 511
Query: 105 aagctcatggaaggggagcacattgggccgttcaacctcggcaaccctggagaattcagc 164
| || |||||||| || || | || || ||||||||||| |||||||| |||||||
Sbjct: 510 agactgatggaaggagaacatgtcggcccattcaacctcggtaaccctggtgaattcacg 451
Query: 165 atgctggagctggctaaggtggtcca 190
||||| ||||| ||||||||||||||
Sbjct: 450 atgctcgagctcgctaaggtggtcca 425
>gb|CB260122.1|CB260122 94-E9601-013-003-K24-t7r MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770K243Q 5-PRIME, mRNA sequence
Length = 499
Score = 67.9 bits (34), Expect = 2e-009
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 46 gtgatggcaagcagactaggagctttcaatatgtctcagatttggtggaagggctgatga 105
||||||| |||||||||||||| || || | |||||| ||| |||||||||| |||||||
Sbjct: 1 gtgatggtaagcagactaggagtttccagtttgtctctgatctggtggaaggtctgatga 60
Query: 106 agctcatggaaggggagcacattgggccgttcaacctcggcaaccctggagaattcagca 165
| | ||||| || || || | || || || ||||| || ||||| || ||||||| ||
Sbjct: 61 ggttgatggagggagaacatgtcggtccatttaaccttggtaaccccggtgaattcacca 120
Query: 166 tgctggagctggctaaggtggt 187
|||| ||||| |||||||||||
Sbjct: 121 tgctcgagctcgctaaggtggt 142
>gb|N38350.1|N38350 19577 Lambda-PRL2 Arabidopsis thaliana cDNA clone 214G12T7 3', mRNA
sequence
Length = 500
Score = 63.9 bits (32), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 135 ttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtcca 190
||||||||||| |||||||| ||||||| ||||| ||||| ||||||||||||||
Sbjct: 32 ttcaacctcggtaaccctggtgaattcacgatgctcgagctcgctaaggtggtcca 87
>gb|AV549274.1|AV549274 AV549274 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ05f08R 5', mRNA sequence
Length = 281
Score = 61.9 bits (31), Expect = 1e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 27 gagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatgtctcagat 86
||||||||||| || ||||||||||| |||||||||||||| || || | |||||| |||
Sbjct: 215 gagcctttgactgtttatggtgatggtaagcagactaggagtttccagtttgtctctgat 274
Query: 87 ttggtgg 93
||||||
Sbjct: 275 ctggtgg 281
>gb|AV550208.1|AV550208 AV550208 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ109f12R 5', mRNA sequence
Length = 449
Score = 58.0 bits (29), Expect = 2e-006
Identities = 125/157 (79%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||| ||||| || ||||| ||||| ||||| || || |||||||| |||||||| |||
Sbjct: 288 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 347
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || |||| ||| || ||| |||| ||||| |||||| | |||||||| || ||
Sbjct: 348 agtttccaatttgtttctgatctggttgaaggtttgatgagacggatggaaggagaacat 407
Query: 126 attgggccgttcaacctcggcaaccctggagaattca 162
| || || ||||||||||| |||||||| |||||||
Sbjct: 408 gtcggcccattcaacctcggtaaccctggtgaattca 444
>gb|AC002535.3| Arabidopsis thaliana chromosome 2 clone T30B22 map CIC06C03, complete
sequence
Length = 98937
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 27 gagcctttgacagtctatggtgatggcaagcagactaggag 67
||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 8870 gagcctttgactgtttatggtgatggtaagcagactaggag 8910
>gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete
sequence
Length = 106355
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 27 gagcctttgacagtctatggtgatggcaagcagactaggag 67
||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 7206 gagcctttgactgtttatggtgatggtaagcagactaggag 7166
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 27 gagcctttgacagtctatggtgatggcaagcagactaggag 67
||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 19546840 gagcctttgactgtttatggtgatggtaagcagactaggag 19546800
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 135 ttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggt 184
||||||||||| |||||||| ||||||| ||||| ||||| ||||||||
Sbjct: 23178205 ttcaacctcggtaaccctggtgaattcacgatgctcgagctcgctaaggt 23178254
Score = 44.1 bits (22), Expect = 0.030
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 42 tatggtgatggcaagcagactaggagctttcaatatgt 79
||||||||||| || |||||| | ||||||||||||||
Sbjct: 19806760 tatggtgatggaaaacagactcgtagctttcaatatgt 19806797
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 135 ttcaacctcggcaaccctggagaattca 162
|||||||| || ||||||||||||||||
Sbjct: 19806958 ttcaaccttggtaaccctggagaattca 19806985
>emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9
Length = 110257
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 135 ttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggt 184
||||||||||| |||||||| ||||||| ||||| ||||| ||||||||
Sbjct: 87948 ttcaacctcggtaaccctggtgaattcacgatgctcgagctcgctaaggt 87997
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 135 ttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggt 184
||||||||||| |||||||| ||||||| ||||| ||||| ||||||||
Sbjct: 23245949 ttcaacctcggtaaccctggtgaattcacgatgctcgagctcgctaaggt 23245998
Score = 44.1 bits (22), Expect = 0.030
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 42 tatggtgatggcaagcagactaggagctttcaatatgt 79
||||||||||| || |||||| | ||||||||||||||
Sbjct: 19854287 tatggtgatggaaaacagactcgtagctttcaatatgt 19854324
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 135 ttcaacctcggcaaccctggagaattca 162
|||||||| || ||||||||||||||||
Sbjct: 19854485 ttcaaccttggtaaccctggagaattca 19854512
>gb|AV782290.1|AV782290 AV782290 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-15-P08 3',
mRNA sequence
Length = 682
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 42 tatggtgatggcaagcagactaggagctttcaatatgtctcagatttggtgga 94
||||||||||| || |||||| | |||||||||||||| || || ||||||||
Sbjct: 594 tatggtgatggaaaacagactcgtagctttcaatatgtttctgacttggtgga 542
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 135 ttcaacctcggcaaccctggagaattca 162
|||||||| || ||||||||||||||||
Sbjct: 501 ttcaaccttggtaaccctggagaattca 474
>gb|AY065075.1| Arabidopsis thaliana dTDP-glucose 4-6-dehydratase-like protein
(F4P12.220) mRNA, complete cds
Length = 1666
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 42 tatggtgatggcaagcagactaggagctttcaatatgtctcagatttggtgga 94
||||||||||| || |||||| | |||||||||||||| || || ||||||||
Sbjct: 1068 tatggtgatggaaaacagactcgtagctttcaatatgtttctgacttggtgga 1120
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 135 ttcaacctcggcaaccctggagaattca 162
|||||||| || ||||||||||||||||
Sbjct: 1161 ttcaaccttggtaaccctggagaattca 1188
>gb|BT003355.1| Arabidopsis thaliana dTDP-glucose 4-6-dehydratase-like protein
(At3g53520) mRNA, complete cds
Length = 1492
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 42 tatggtgatggcaagcagactaggagctttcaatatgtctcagatttggtgga 94
||||||||||| || |||||| | |||||||||||||| || || ||||||||
Sbjct: 961 tatggtgatggaaaacagactcgtagctttcaatatgtttctgacttggtgga 1013
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 135 ttcaacctcggcaaccctggagaattca 162
|||||||| || ||||||||||||||||
Sbjct: 1054 ttcaaccttggtaaccctggagaattca 1081
>emb|BX822635.1|CNS0A7MG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB54ZH12 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1604
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 42 tatggtgatggcaagcagactaggagctttcaatatgtctcagatttggtgga 94
||||||||||| || |||||| | |||||||||||||| || || ||||||||
Sbjct: 1055 tatggtgatggaaaacagactcgtagctttcaatatgtttctgacttggtgga 1107
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 135 ttcaacctcggcaaccctggagaattca 162
|||||||| || ||||||||||||||||
Sbjct: 1148 ttcaaccttggtaaccctggagaattca 1175
>emb|BX823176.1|CNS0A7M4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB95ZE05 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1648
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 42 tatggtgatggcaagcagactaggagctttcaatatgtctcagatttggtgga 94
||||||||||| || |||||| | |||||||||||||| || || ||||||||
Sbjct: 1112 tatggtgatggaaaacagactcgtagctttcaatatgtttctgacttggtgga 1164
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 135 ttcaacctcggcaaccctggagaattca 162
|||||||| || ||||||||||||||||
Sbjct: 1205 ttcaaccttggtaaccctggagaattca 1232
>ref|NM_115212.2| Arabidopsis thaliana UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1);
catalytic AT3G53520 (UXS1) transcript variant
AT3G53520.2 mRNA, complete cds
Length = 1531
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 42 tatggtgatggcaagcagactaggagctttcaatatgtctcagatttggtgga 94
||||||||||| || |||||| | |||||||||||||| || || ||||||||
Sbjct: 934 tatggtgatggaaaacagactcgtagctttcaatatgtttctgacttggtgga 986
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 135 ttcaacctcggcaaccctggagaattca 162
|||||||| || ||||||||||||||||
Sbjct: 1027 ttcaaccttggtaaccctggagaattca 1054
>gb|AV788561.1|AV788561 AV788561 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-80-C09 3',
mRNA sequence
Length = 420
Score = 44.1 bits (22), Expect = 0.030
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 138 aacctcggcaaccctggagaattcagcatgctggagctggctaaggtggt 187
||||| || ||||| || ||||||| |||||| ||||| |||||||||||
Sbjct: 410 aaccttggtaaccccggtgaattcaccatgctcgagctcgctaaggtggt 361
>gb|AV814478.1|AV814478 AV814478 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-83-C10 3',
mRNA sequence
Length = 395
Score = 44.1 bits (22), Expect = 0.030
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 138 aacctcggcaaccctggagaattcagcatgctggagctggctaaggtggt 187
||||| || ||||| || ||||||| |||||| ||||| |||||||||||
Sbjct: 385 aaccttggtaaccccggtgaattcaccatgctcgagctcgctaaggtggt 336
>gb|AV567402.1|AV567402 AV567402 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQL13a08F 3', mRNA sequence
Length = 418
Score = 44.1 bits (22), Expect = 0.030
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 138 aacctcggcaaccctggagaattcagcatgctggagctggctaaggtggt 187
||||| || ||||| || ||||||| |||||| ||||| |||||||||||
Sbjct: 398 aaccttggtaaccccggtgaattcaccatgctcgagctcgctaaggtggt 349
>gb|BP565000.1|BP565000 BP565000 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-10-F18 3',
mRNA sequence
Length = 414
Score = 44.1 bits (22), Expect = 0.030
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 138 aacctcggcaaccctggagaattcagcatgctggagctggctaaggtggt 187
||||| || ||||| || ||||||| |||||| ||||| |||||||||||
Sbjct: 392 aaccttggtaaccccggtgaattcaccatgctcgagctcgctaaggtggt 343
>gb|BP571979.1|BP571979 BP571979 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-78-E23 3',
mRNA sequence
Length = 444
Score = 44.1 bits (22), Expect = 0.030
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 138 aacctcggcaaccctggagaattcagcatgctggagctggctaaggtggt 187
||||| || ||||| || ||||||| |||||| ||||| |||||||||||
Sbjct: 390 aaccttggtaaccccggtgaattcaccatgctcgagctcgctaaggtggt 341
>gb|BP575347.1|BP575347 BP575347 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-12-A08 3',
mRNA sequence
Length = 421
Score = 44.1 bits (22), Expect = 0.030
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 138 aacctcggcaaccctggagaattcagcatgctggagctggctaaggtggt 187
||||| || ||||| || ||||||| |||||| ||||| |||||||||||
Sbjct: 390 aaccttggtaaccccggtgaattcaccatgctcgagctcgctaaggtggt 341
>gb|BP582514.1|BP582514 BP582514 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-36-J02 3',
mRNA sequence
Length = 457
Score = 44.1 bits (22), Expect = 0.030
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 138 aacctcggcaaccctggagaattcagcatgctggagctggctaaggtggt 187
||||| || ||||| || ||||||| |||||| ||||| |||||||||||
Sbjct: 413 aaccttggtaaccccggtgaattcaccatgctcgagctcgctaaggtggt 364
>gb|BP585895.1|BP585895 BP585895 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-04-E21 3',
mRNA sequence
Length = 450
Score = 44.1 bits (22), Expect = 0.030
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 138 aacctcggcaaccctggagaattcagcatgctggagctggctaaggtggt 187
||||| || ||||| || ||||||| |||||| ||||| |||||||||||
Sbjct: 390 aaccttggtaaccccggtgaattcaccatgctcgagctcgctaaggtggt 341
>gb|AF387787.1| Arabidopsis thaliana UDP-glucuronic acid decarboxylase (UXS1) mRNA,
complete cds
Length = 1302
Score = 44.1 bits (22), Expect = 0.030
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 42 tatggtgatggcaagcagactaggagctttcaatatgt 79
||||||||||| || |||||| | ||||||||||||||
Sbjct: 961 tatggtgatggaaaacagactcgtagctttcaatatgt 998
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 135 ttcaacctcggcaaccctggagaattca 162
|||||||| || ||||||||||||||||
Sbjct: 1048 ttcaaccttggtaaccctggagaattca 1075
>emb|AL132966.1|ATF4P12 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12
Length = 144628
Score = 44.1 bits (22), Expect = 0.030
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 42 tatggtgatggcaagcagactaggagctttcaatatgt 79
||||||||||| || |||||| | ||||||||||||||
Sbjct: 83979 tatggtgatggaaaacagactcgtagctttcaatatgt 84016
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 135 ttcaacctcggcaaccctggagaattca 162
|||||||| || ||||||||||||||||
Sbjct: 84177 ttcaaccttggtaaccctggagaattca 84204
>ref|NM_180363.1| Arabidopsis thaliana UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1);
catalytic AT3G53520 (UXS1) transcript variant
AT3G53520.1 mRNA, complete cds
Length = 1529
Score = 44.1 bits (22), Expect = 0.030
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 42 tatggtgatggcaagcagactaggagctttcaatatgt 79
||||||||||| || |||||| | ||||||||||||||
Sbjct: 934 tatggtgatggaaaacagactcgtagctttcaatatgt 971
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 135 ttcaacctcggcaaccctggagaattca 162
|||||||| || ||||||||||||||||
Sbjct: 1025 ttcaaccttggtaaccctggagaattca 1052
>gb|BX834349.1|BX834349 BX834349 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS45ZB03 3PRIM, mRNA
sequence
Length = 543
Score = 42.1 bits (21), Expect = 0.12
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 42 tatggtgatggcaagcagactaggagctttcaatatgtctcagatttggtgga 94
||||||||||| || |||||| | |||| ||||||||| || || ||||||||
Sbjct: 531 tatggtgatggaaaacagactcgtagctctcaatatgtttctgacttggtgga 479
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 135 ttcaacctcggcaaccctggagaattca 162
|||||||| || ||||||||||||||||
Sbjct: 438 ttcaaccttggtaaccctggagaattca 411
>gb|BP643420.1|BP643420 BP643420 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-61-O04 3',
mRNA sequence
Length = 441
Score = 42.1 bits (21), Expect = 0.12
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 147 aaccctggagaattcagcatgctggagctggctaaggtggt 187
||||| || ||||||| |||||| ||||| |||||||||||
Sbjct: 401 aaccccggtgaattcaccatgctcgagctcgctaaggtggt 361
>gb|BP647909.1|BP647909 BP647909 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-76-O17 3',
mRNA sequence
Length = 421
Score = 42.1 bits (21), Expect = 0.12
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 147 aaccctggagaattcagcatgctggagctggctaaggtggt 187
||||| || ||||||| |||||| ||||| |||||||||||
Sbjct: 382 aaccccggtgaattcaccatgctcgagctcgctaaggtggt 342
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 210,467
Number of Sequences: 1013581
Number of extensions: 210467
Number of successful extensions: 13877
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13423
Number of HSP's gapped (non-prelim): 454
length of query: 651
length of database: 908,940,872
effective HSP length: 20
effective length of query: 631
effective length of database: 888,669,252
effective search space: 560750298012
effective search space used: 560750298012
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)