BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3478999.2.1
(825 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|BX814028.1|CNS0AE9U Arabidopsis thaliana Full-length cD... 174 2e-041
gb|CF651630.1|CF651630 09-L020359-066-002-A03-SP6P MPIZ-ADI... 168 1e-039
gb|AV537417.1|AV537417 AV537417 Arabidopsis thaliana roots ... 168 1e-039
gb|AY049261.1| Arabidopsis thaliana At1g78870/F9K20_8 mRNA,... 168 1e-039
gb|BT000544.1| Arabidopsis thaliana putative ubiquitin-conj... 168 1e-039
gb|AY085854.1| Arabidopsis thaliana clone 19071 mRNA, compl... 168 1e-039
ref|NM_106535.2| Arabidopsis thaliana ubiquitin conjugating... 168 1e-039
gb|DQ027048.1| Arabidopsis thaliana ubiquitinating enzyme (... 168 1e-039
gb|CB256784.1|CB256784 61-E011172-027-005-I15-T7R MPIZ-ADIS... 167 4e-039
gb|AV825916.1|AV825916 AV825916 RAFL7 Arabidopsis thaliana ... 157 4e-036
gb|CB259578.1|CB259578 38-E9538-013-002-L10-T7R MPIZ-ADIS-0... 155 1e-035
ref|NM_179571.2| Arabidopsis thaliana ubiquitin conjugating... 155 1e-035
emb|BX814646.1|CNS0AC4W Arabidopsis thaliana Full-length cD... 141 2e-031
gb|T22122.1|T22122 4130 Lambda-PRL2 Arabidopsis thaliana cD... 133 5e-029
gb|AV824615.1|AV824615 AV824615 RAFL6 Arabidopsis thaliana ... 133 5e-029
gb|AV545137.1|AV545137 AV545137 Arabidopsis thaliana roots ... 133 5e-029
gb|CB254245.1|CB254245 75-E015332-019-005-F19-T7R MPIZ-ADIS... 133 5e-029
gb|AY052307.1| Arabidopsis thaliana At1g16890/F17F16.16 mRN... 133 5e-029
gb|AY061926.1| Arabidopsis thaliana At1g16890/F17F16.16 mRN... 133 5e-029
gb|AY086780.1| Arabidopsis thaliana clone 2763 mRNA, comple... 133 5e-029
ref|NM_101550.1| Arabidopsis thaliana ubiquitin conjugating... 133 5e-029
ref|NM_179347.1| Arabidopsis thaliana ubiquitin conjugating... 133 5e-029
gb|DQ027049.1| Arabidopsis thaliana ubiquitinating enzyme (... 133 5e-029
gb|AI993889.1|AI993889 701515319 A. thaliana, Ohio State cl... 131 2e-028
gb|BP862006.1|BP862006 BP862006 RAFL21 Arabidopsis thaliana... 131 2e-028
ref|NM_001036221.1| Arabidopsis thaliana ubiquitin conjugat... 131 2e-028
gb|BP836421.1|BP836421 BP836421 RAFL19 Arabidopsis thaliana... 127 3e-027
emb|BX813701.1|CNS0AEIF Arabidopsis thaliana Full-length cD... 127 3e-027
gb|T43710.1|T43710 6973 Lambda-PRL2 Arabidopsis thaliana cD... 123 5e-026
gb|Z34711.1|Z34711 ATTS3471 Strasbourg-A Arabidopsis thalia... 119 8e-025
gb|BE523894.1|BE523894 M43C2STM Arabidopsis developing seed... 117 3e-024
gb|BP854585.1|BP854585 BP854585 RAFL21 Arabidopsis thaliana... 117 3e-024
gb|AA040983.1|AA040983 24249 CD4-13 Arabidopsis thaliana cD... 115 1e-023
gb|BP819994.1|BP819994 BP819994 RAFL19 Arabidopsis thaliana... 107 3e-021
gb|T46680.1|T46680 9943 Lambda-PRL2 Arabidopsis thaliana cD... 103 5e-020
gb|H37659.1|H37659 15788 Lambda-PRL2 Arabidopsis thaliana c... 100 7e-019
gb|AV553815.1|AV553815 AV553815 Arabidopsis thaliana roots ... 100 7e-019
gb|BP851319.1|BP851319 BP851319 RAFL21 Arabidopsis thaliana... 100 7e-019
gb|BP857352.1|BP857352 BP857352 RAFL21 Arabidopsis thaliana... 98 3e-018
gb|AV794908.1|AV794908 AV794908 RAFL8 Arabidopsis thaliana ... 96 1e-017
gb|BP837747.1|BP837747 BP837747 RAFL19 Arabidopsis thaliana... 96 1e-017
gb|CB264254.1|CB264254 77-E014659-035-002-I20-T7R MPIZ-ADIS... 86 1e-014
gb|BP565033.1|BP565033 BP565033 RAFL14 Arabidopsis thaliana... 86 1e-014
gb|AA712478.1|AA712478 32193 Lambda-PRL2 Arabidopsis thalia... 82 2e-013
gb|AV820658.1|AV820658 AV820658 RAFL11 Arabidopsis thaliana... 80 7e-013
gb|BP822506.1|BP822506 BP822506 RAFL19 Arabidopsis thaliana... 80 7e-013
emb|BX813418.1|CNS0ACA7 Arabidopsis thaliana Full-length cD... 78 3e-012
gb|AV792906.1|AV792906 AV792906 RAFL7 Arabidopsis thaliana ... 74 4e-011
gb|BP861202.1|BP861202 BP861202 RAFL21 Arabidopsis thaliana... 74 4e-011
gb|BP669230.1|BP669230 BP669230 RAFL21 Arabidopsis thaliana... 72 2e-010
gb|AV819577.1|AV819577 AV819577 RAFL11 Arabidopsis thaliana... 70 7e-010
gb|BP608679.1|BP608679 BP608679 RAFL16 Arabidopsis thaliana... 70 7e-010
gb|AV790640.1|AV790640 AV790640 RAFL6 Arabidopsis thaliana ... 68 3e-009
gb|AV809348.1|AV809348 AV809348 RAFL9 Arabidopsis thaliana ... 68 3e-009
gb|BP666336.1|BP666336 BP666336 RAFL21 Arabidopsis thaliana... 68 3e-009
gb|BP829877.1|BP829877 BP829877 RAFL19 Arabidopsis thaliana... 68 3e-009
gb|H36151.1|H36151 14673 Lambda-PRL2 Arabidopsis thaliana c... 66 1e-008
gb|BP621472.1|BP621472 BP621472 RAFL16 Arabidopsis thaliana... 62 2e-007
gb|T88233.1|T88233 11929 Lambda-PRL2 Arabidopsis thaliana c... 60 6e-007
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 60 6e-007
gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BA... 60 6e-007
gb|AC051629.3|AC051629 Arabidopsis thaliana chromosome I BA... 60 6e-007
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 60 6e-007
gb|BE038605.1|BE038605 AB01G07 AB Arabidopsis thaliana cDNA... 58 3e-006
gb|AV537053.1|AV537053 AV537053 Arabidopsis thaliana liquid... 58 3e-006
gb|AV558510.1|AV558510 AV558510 Arabidopsis thaliana green ... 58 3e-006
gb|CW799164.1|CW799164 WiscDsLox323H12 Arabidopsis thaliana... 56 1e-005
gb|CW800248.1|CW800248 WiscDsLox233237_16L Arabidopsis thal... 56 1e-005
gb|AC005679.1|F9K20 Arabidopsis thaliana chromosome 1 BAC F... 56 1e-005
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 56 1e-005
gb|BP647557.1|BP647557 BP647557 RAFL19 Arabidopsis thaliana... 54 4e-005
gb|BP625389.1|BP625389 BP625389 RAFL17 Arabidopsis thaliana... 50 6e-004
gb|T45804.1|T45804 9067 Lambda-PRL2 Arabidopsis thaliana cD... 44 0.038
gb|AA597426.1|AA597426 29697 Lambda-PRL2 Arabidopsis thalia... 42 0.15
gb|AV786972.1|AV786972 AV786972 RAFL6 Arabidopsis thaliana ... 42 0.15
gb|CD529244.1|CD529244 02D19 Arabidopsis Leaf Senescence Li... 42 0.15
gb|BP640016.1|BP640016 BP640016 RAFL19 Arabidopsis thaliana... 42 0.15
>emb|BX814028.1|CNS0AE9U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB52ZH04 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 803
Score = 174 bits (88), Expect = 2e-041
Identities = 244/296 (82%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| || ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 218 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggaggagtt 277
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || |||||||| ||||| || ||||| || || || |||||||||
Sbjct: 278 ttcaagttggagctctttttgcctgaagaataccctatggcagcgcccaaggttaggttt 337
Query: 274 ctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgacattctt 333
||||| || || |||||||| ||||||||||||||||| || || || || || |||||
Sbjct: 338 ctcacaaagatataccatcctaacattgacaagcttggaagaatctgtcttgatattctc 397
Query: 334 aaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcaggcactt 393
|||||||||||||| || || || || ||||| |||||||| | || ||||| || |||
Sbjct: 398 aaggacaaatggagccctgcactacaaatacgaacagttctcttaagtattcaagctctt 457
Query: 394 ctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacactggaa 449
|||||||| ||||| ||||||||||| || || || |||||||| || ||||||||
Sbjct: 458 ctgagtgcaccaaacccagatgatccgctttctgagaacattgctaagcactggaa 513
>gb|CF651630.1|CF651630 09-L020359-066-002-A03-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001A032Q 5-PRIME, mRNA sequence
Length = 789
Score = 168 bits (85), Expect = 1e-039
Identities = 286/353 (81%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| || ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 222 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggaggagtt 281
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || |||||||| ||||| || ||||| || || || |||||||||
Sbjct: 282 ttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggttaggttt 341
Query: 274 ctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgacattctt 333
||||| || || |||||||| ||||||||||||||||| || || || || || |||||
Sbjct: 342 ctcacaaagatataccatcctaacattgacaagcttggaagaatctgtcttgatattctc 401
Query: 334 aaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcaggcactt 393
|||||||||||||| || || || || ||||| ||||| || | || ||||| || |||
Sbjct: 402 aaggacaaatggagccctgcactacaaatacgaacagtgctcttaagtattcaagctctt 461
Query: 394 ctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacactggaaatca 453
|||||||| ||||| ||||||||||| || || || |||||||| || ||||||||
Sbjct: 462 ctgagtgcaccaaacccagatgatccgctttctgagaacattgctaagcactggaagagt 521
Query: 454 aatgaagctgaagcttttgagacagcgaaggagtggactcgcctgtatgcaag 506
||||| || |||||| | || ||||| ||||| ||||| || || ||||||||
Sbjct: 522 aatgaggcagaagctgtggatacagctaaggaatggacccgtctttatgcaag 574
>gb|AV537417.1|AV537417 AV537417 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ05f06F 3', mRNA sequence
Length = 596
Score = 168 bits (85), Expect = 1e-039
Identities = 286/353 (81%)
Strand = Plus / Minus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| || ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 533 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggaggagtt 474
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || |||||||| ||||| || ||||| || || || |||||||||
Sbjct: 473 ttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggttaggttt 414
Query: 274 ctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgacattctt 333
||||| || || |||||||| ||||||||||||||||| || || || || || |||||
Sbjct: 413 ctcacaaagatataccatcctaacattgacaagcttggaagaatctgtcttgatattctc 354
Query: 334 aaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcaggcactt 393
|||||||||||||| || || || || ||||| ||||| || | || ||||| || |||
Sbjct: 353 aaggacaaatggagccctgcactacaaatacgaacagtgctcttaagtattcaagctctt 294
Query: 394 ctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacactggaaatca 453
|||||||| ||||| ||||||||||| || || || |||||||| || ||||||||
Sbjct: 293 ctgagtgcaccaaacccagatgatccgctttctgagaacattgctaagcactggaagagt 234
Query: 454 aatgaagctgaagcttttgagacagcgaaggagtggactcgcctgtatgcaag 506
||||| || |||||| | || ||||| ||||| ||||| || || ||||||||
Sbjct: 233 aatgaggcagaagctgtggatacagctaaggaatggacccgtctttatgcaag 181
>gb|AY049261.1| Arabidopsis thaliana At1g78870/F9K20_8 mRNA, complete cds
Length = 757
Score = 168 bits (85), Expect = 1e-039
Identities = 286/353 (81%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| || ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 210 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggaggagtt 269
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || |||||||| ||||| || ||||| || || || |||||||||
Sbjct: 270 ttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggttaggttt 329
Query: 274 ctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgacattctt 333
||||| || || |||||||| ||||||||||||||||| || || || || || |||||
Sbjct: 330 ctcacaaagatataccatcctaacattgacaagcttggaagaatctgtcttgatattctc 389
Query: 334 aaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcaggcactt 393
|||||||||||||| || || || || ||||| ||||| || | || ||||| || |||
Sbjct: 390 aaggacaaatggagccctgcactacaaatacgaacagtgctcttaagtattcaagctctt 449
Query: 394 ctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacactggaaatca 453
|||||||| ||||| ||||||||||| || || || |||||||| || ||||||||
Sbjct: 450 ctgagtgcaccaaacccagatgatccgctttctgagaacattgctaagcactggaagagt 509
Query: 454 aatgaagctgaagcttttgagacagcgaaggagtggactcgcctgtatgcaag 506
||||| || |||||| | || ||||| ||||| ||||| || || ||||||||
Sbjct: 510 aatgaggcagaagctgtggatacagctaaggaatggacccgtctttatgcaag 562
>gb|BT000544.1| Arabidopsis thaliana putative ubiquitin-conjugating enzyme E2
(At1g78870/F9K20_8) mRNA, complete cds
Length = 462
Score = 168 bits (85), Expect = 1e-039
Identities = 286/353 (81%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| || ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 100 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggaggagtt 159
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || |||||||| ||||| || ||||| || || || |||||||||
Sbjct: 160 ttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggttaggttt 219
Query: 274 ctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgacattctt 333
||||| || || |||||||| ||||||||||||||||| || || || || || |||||
Sbjct: 220 ctcacaaagatataccatcctaacattgacaagcttggaagaatctgtcttgatattctc 279
Query: 334 aaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcaggcactt 393
|||||||||||||| || || || || ||||| ||||| || | || ||||| || |||
Sbjct: 280 aaggacaaatggagccctgcactacaaatacgaacagtgctcttaagtattcaagctctt 339
Query: 394 ctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacactggaaatca 453
|||||||| ||||| ||||||||||| || || || |||||||| || ||||||||
Sbjct: 340 ctgagtgcaccaaacccagatgatccgctttctgagaacattgctaagcactggaagagt 399
Query: 454 aatgaagctgaagcttttgagacagcgaaggagtggactcgcctgtatgcaag 506
||||| || |||||| | || ||||| ||||| ||||| || || ||||||||
Sbjct: 400 aatgaggcagaagctgtggatacagctaaggaatggacccgtctttatgcaag 452
>gb|AY085854.1| Arabidopsis thaliana clone 19071 mRNA, complete sequence
Length = 778
Score = 168 bits (85), Expect = 1e-039
Identities = 286/353 (81%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| || ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 233 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggaggagtt 292
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || |||||||| ||||| || ||||| || || || |||||||||
Sbjct: 293 ttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggttaggttt 352
Query: 274 ctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgacattctt 333
||||| || || |||||||| ||||||||||||||||| || || || || || |||||
Sbjct: 353 ctcacaaagatataccatcctaacattgacaagcttggaagaatctgtcttgatattctc 412
Query: 334 aaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcaggcactt 393
|||||||||||||| || || || || ||||| ||||| || | || ||||| || |||
Sbjct: 413 aaggacaaatggagccctgcactacaaatacgaacagtgctcttaagtattcaagctctt 472
Query: 394 ctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacactggaaatca 453
|||||||| ||||| ||||||||||| || || || |||||||| || ||||||||
Sbjct: 473 ctgagtgcaccaaacccagatgatccgctttctgagaacattgctaagcactggaagagt 532
Query: 454 aatgaagctgaagcttttgagacagcgaaggagtggactcgcctgtatgcaag 506
||||| || |||||| | || ||||| ||||| ||||| || || ||||||||
Sbjct: 533 aatgaggcagaagctgtggatacagctaaggaatggacccgtctttatgcaag 585
>ref|NM_106535.2| Arabidopsis thaliana ubiquitin conjugating enzyme/ ubiquitin-like
activating enzyme AT1G78870 transcript variant
AT1G78870.2 mRNA, complete cds
Length = 909
Score = 168 bits (85), Expect = 1e-039
Identities = 286/353 (81%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| || ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 233 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggaggagtt 292
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || |||||||| ||||| || ||||| || || || |||||||||
Sbjct: 293 ttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggttaggttt 352
Query: 274 ctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgacattctt 333
||||| || || |||||||| ||||||||||||||||| || || || || || |||||
Sbjct: 353 ctcacaaagatataccatcctaacattgacaagcttggaagaatctgtcttgatattctc 412
Query: 334 aaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcaggcactt 393
|||||||||||||| || || || || ||||| ||||| || | || ||||| || |||
Sbjct: 413 aaggacaaatggagccctgcactacaaatacgaacagtgctcttaagtattcaagctctt 472
Query: 394 ctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacactggaaatca 453
|||||||| ||||| ||||||||||| || || || |||||||| || ||||||||
Sbjct: 473 ctgagtgcaccaaacccagatgatccgctttctgagaacattgctaagcactggaagagt 532
Query: 454 aatgaagctgaagcttttgagacagcgaaggagtggactcgcctgtatgcaag 506
||||| || |||||| | || ||||| ||||| ||||| || || ||||||||
Sbjct: 533 aatgaggcagaagctgtggatacagctaaggaatggacccgtctttatgcaag 585
>gb|DQ027048.1| Arabidopsis thaliana ubiquitinating enzyme (At1g78870) mRNA,
complete cds
Length = 462
Score = 168 bits (85), Expect = 1e-039
Identities = 286/353 (81%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| || ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 100 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggaggagtt 159
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || |||||||| ||||| || ||||| || || || |||||||||
Sbjct: 160 ttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggttaggttt 219
Query: 274 ctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgacattctt 333
||||| || || |||||||| ||||||||||||||||| || || || || || |||||
Sbjct: 220 ctcacaaagatataccatcctaacattgacaagcttggaagaatctgtcttgatattctc 279
Query: 334 aaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcaggcactt 393
|||||||||||||| || || || || ||||| ||||| || | || ||||| || |||
Sbjct: 280 aaggacaaatggagccctgcactacaaatacgaacagtgctcttaagtattcaagctctt 339
Query: 394 ctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacactggaaatca 453
|||||||| ||||| ||||||||||| || || || |||||||| || ||||||||
Sbjct: 340 ctgagtgcaccaaacccagatgatccgctttctgagaacattgctaagcactggaagagt 399
Query: 454 aatgaagctgaagcttttgagacagcgaaggagtggactcgcctgtatgcaag 506
||||| || |||||| | || ||||| ||||| ||||| || || ||||||||
Sbjct: 400 aatgaggcagaagctgtggatacagctaaggaatggacccgtctttatgcaag 452
>gb|CB256784.1|CB256784 61-E011172-027-005-I15-T7R MPIZ-ADIS-027 Arabidopsis thaliana cDNA
clone MPIZp772I155Q 5-PRIME, mRNA sequence
Length = 615
Score = 167 bits (84), Expect = 4e-039
Identities = 243/296 (82%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| || ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 229 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggaggagtt 288
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || |||||||| ||||| || ||||| || || || |||||||||
Sbjct: 289 ttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggttaggttt 348
Query: 274 ctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgacattctt 333
||||| || || |||||||| ||||||||||||||||| || || || || || |||||
Sbjct: 349 ctcacaaagatataccatcctaacattgacaagcttggaagaatctgtcttgatattctc 408
Query: 334 aaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcaggcactt 393
|||||||||||||| || || || || ||||| ||||| || | || ||||| || |||
Sbjct: 409 aaggacaaatggagccctgcactacaaatacgaacagtgctcttaagtattcaagctctt 468
Query: 394 ctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacactggaa 449
|||||||| ||||| ||||||||||| || || || |||||||| || ||||||||
Sbjct: 469 ctgagtgcaccaaacccagatgatccgctttctgagaacattgctaagcactggaa 524
>gb|AV825916.1|AV825916 AV825916 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-17-D23 5',
mRNA sequence
Length = 607
Score = 157 bits (79), Expect = 4e-036
Identities = 232/283 (81%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| || ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 211 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggaggagtt 270
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || |||||||| ||||| || ||||| || || || |||||||||
Sbjct: 271 ttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggttaggttt 330
Query: 274 ctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgacattctt 333
||||| || || |||||||| ||||||||||||||||| || || || || || |||||
Sbjct: 331 ctcacaaagatataccatcctaacattgacaagcttggaagaatctgtcttgatattctc 390
Query: 334 aaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcaggcactt 393
|||||||||||||| || || || || ||||| ||||| || | || ||||| || |||
Sbjct: 391 aaggacaaatggagccctgcactacaaatacgaacagtgctcttaagtattcaagctctt 450
Query: 394 ctgagtgccccaaatccagatgatcctctctcagacaacattg 436
|||||||| ||||| ||||||||||| || || || |||||||
Sbjct: 451 ctgagtgcaccaaacccagatgatccgctttctgagaacattg 493
>gb|CB259578.1|CB259578 38-E9538-013-002-L10-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770L102Q 5-PRIME, mRNA sequence
Length = 603
Score = 155 bits (78), Expect = 1e-035
Identities = 240/294 (81%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| | ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 240 atgcggtatttcaacgctatgattcttggtcctacacaatcaccttatgaaggaggagtt 299
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || |||||||| ||||| || ||||| || || || |||||||||
Sbjct: 300 ttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggttaggttt 359
Query: 274 ctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgacattctt 333
||||| || || |||||||| ||||||||||||||||| || || || || || |||||
Sbjct: 360 ctcacaaagatataccatcctaacattgacaagcttggaagaatctgtcttgatattctc 419
Query: 334 aaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcaggcactt 393
|||||||||||||| || || || || ||||| ||||| || | || ||||| || |||
Sbjct: 420 aaggacaaatggagccctgcactacaaatacgaacagtgctcttaagtattcaagctctt 479
Query: 394 ctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacactgg 447
|||||||| ||||| ||||||||||| || || || |||||||| || ||||||
Sbjct: 480 ctgagtgcaccaaacccagatgatccgctttctgagaacattgctaagcactgg 533
>ref|NM_179571.2| Arabidopsis thaliana ubiquitin conjugating enzyme/ ubiquitin-like
activating enzyme AT1G78870 transcript variant
AT1G78870.1 mRNA, complete cds
Length = 905
Score = 155 bits (78), Expect = 1e-035
Identities = 287/356 (80%), Gaps = 3/356 (0%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggt---gga 210
|||||||| ||||| || ||||| ||||| || |||| ||||| ||||||||| |||
Sbjct: 226 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggtagagga 285
Query: 211 gttttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttagg 270
||||||||| | ||||| || |||||||| ||||| || ||||| || || || ||||||
Sbjct: 286 gttttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggttagg 345
Query: 271 tttctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgacatt 330
|||||||| || || |||||||| ||||||||||||||||| || || || || || |||
Sbjct: 346 tttctcacaaagatataccatcctaacattgacaagcttggaagaatctgtcttgatatt 405
Query: 331 cttaaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcaggca 390
|| |||||||||||||| || || || || ||||| ||||| || | || ||||| ||
Sbjct: 406 ctcaaggacaaatggagccctgcactacaaatacgaacagtgctcttaagtattcaagct 465
Query: 391 cttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacactggaaa 450
||||||||||| ||||| ||||||||||| || || || |||||||| || ||||||||
Sbjct: 466 cttctgagtgcaccaaacccagatgatccgctttctgagaacattgctaagcactggaag 525
Query: 451 tcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctgtatgcaag 506
||||| || |||||| | || ||||| ||||| ||||| || || ||||||||
Sbjct: 526 agtaatgaggcagaagctgtggatacagctaaggaatggacccgtctttatgcaag 581
>emb|BX814646.1|CNS0AC4W Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB86ZH05 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 515
Score = 141 bits (71), Expect = 2e-031
Identities = 242/299 (80%)
Strand = Plus / Plus
Query: 208 ggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagtt 267
|||||||||||| | ||||| || |||||||| ||||| || ||||| || || || |||
Sbjct: 5 ggagttttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggtt 64
Query: 268 aggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgac 327
||||||||||| || || |||||||| ||||||||||||||||| || || || || ||
Sbjct: 65 aggtttctcacaaagatataccatcctaacattgacaagcttggaagaatctgtcttgat 124
Query: 328 attcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcattcag 387
||||| |||||||||||||| || || || || ||||| ||||| || | || |||||
Sbjct: 125 attctcaaggacaaatggagccctgcactacaaatacgaacagtgctcttaagtattcaa 184
Query: 388 gcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacactgg 447
|| ||||||||||| ||||| ||||||||||| || || || |||||||| || ||||||
Sbjct: 185 gctcttctgagtgcaccaaacccagatgatccgctttctgagaacattgctaagcactgg 244
Query: 448 aaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctgtatgcaag 506
|| ||||| || |||||| | || ||||| ||||| ||||| || || ||||||||
Sbjct: 245 aagagtaatgaggcagaagctgtggatacagctaaggaatggacccgtctttatgcaag 303
>gb|T22122.1|T22122 4130 Lambda-PRL2 Arabidopsis thaliana cDNA clone 96P20T7, mRNA
sequence
Length = 524
Score = 133 bits (67), Expect = 5e-029
Identities = 180/218 (82%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| || ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 38 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggaggagtt 97
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || |||||||| ||||| || ||||| || || || |||||||||
Sbjct: 98 ttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggttaggttt 157
Query: 274 ctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgacattctt 333
||||| || || |||||||| ||||||||||||||||| || || || || || |||||
Sbjct: 158 ctcacaaagatataccatcctaacattgacaagcttggaagaatctgtcttgatattctc 217
Query: 334 aaggacaaatggagtcccgctcttcagatacgtacagt 371
|||||||||||||| || || || || ||||| |||||
Sbjct: 218 aaggacaaatggagccctgcactacaaatacgnacagt 255
>gb|AV824615.1|AV824615 AV824615 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-73-J10 5',
mRNA sequence
Length = 659
Score = 133 bits (67), Expect = 5e-029
Identities = 340/431 (78%)
Strand = Plus / Plus
Query: 79 cgaatcatcaaggagacgcagcggctcctcagcgaaccagcgccggggattagcgcgtcg 138
|||||||||||||| || || || || || || ||||| || || ||||| || |||||
Sbjct: 124 cgaatcatcaaggaaactcaacgtctgcttagtgaacctgctcctgggataagtgcgtct 183
Query: 139 ccgtcggaagagaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccc 198
|| || || || || ||| | || |||||||| ||||| ||||| || | || || ||
Sbjct: 184 ccatcagaggaaaatatgagatatttcaatgttatgattcttggtcctactcaatctcct 243
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| |||||||||||| | ||||| || |||||||| |||||||| ||||| ||
Sbjct: 244 tatgaaggaggagttttcaagttggagctctttttgcctgaagaatatcctatggcagct 303
Query: 259 ccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggata 318
|| || ||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||
Sbjct: 304 cccaaggttaggtttctcaccaagatttaccatcctaacatcgacaagcttggaagaatc 363
Query: 319 tgcctcgacattcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctc 378
||||| ||||| || || ||||| |||||||| || || || ||||| || || || |
Sbjct: 364 tgccttgacatactgaaagacaagtggagtcctgcactacaaatacgaactgtgctcttg 423
Query: 379 agcattcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcg 438
|| || || || ||| | ||||| ||||| |||||||||||||| || || ||||| ||
Sbjct: 424 agtatccaagctcttttaagtgcaccaaacccagatgatcctctgtctgagaacatagct 483
Query: 439 aaacactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctg 498
|| || ||||| ||||| || |||||| | || ||||| ||||| |||||||| ||
Sbjct: 484 aagcattggaagagcaatgaggcagaagctgtggaaacagctaaggaatggactcgtctt 543
Query: 499 tatgcaagtgg 509
|| ||||||||
Sbjct: 544 tacgcaagtgg 554
>gb|AV545137.1|AV545137 AV545137 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ73a08F 3', mRNA sequence
Length = 651
Score = 133 bits (67), Expect = 5e-029
Identities = 250/311 (80%)
Strand = Plus / Minus
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| |||||||||||| | ||||| || |||||||| |||||||| ||||| ||
Sbjct: 482 tatgaaggaggagttttcaagttggagctctttttgcctgaagaatatcctatggcagct 423
Query: 259 ccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggata 318
|| || ||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||
Sbjct: 422 cccaaggttaggtttctcaccaagatttaccatcctaacatcgacaagcttggaagaatc 363
Query: 319 tgcctcgacattcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctc 378
||||| ||||| || || ||||| |||||||| || || || ||||| || || || |
Sbjct: 362 tgccttgacatactgaaagacaagtggagtcctgcactacaaatacgaactgtgctcttg 303
Query: 379 agcattcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcg 438
|| || || || ||| | ||||| ||||| |||||||||||||| || || ||||| ||
Sbjct: 302 agtatccaagctcttttaagtgcaccaaacccagatgatcctctgtctgagaacatagct 243
Query: 439 aaacactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctg 498
|| || ||||| ||||| || |||||| | || ||||| ||||| |||||||| ||
Sbjct: 242 aagcattggaagagcaatgaggcagaagctgtggaaacagctaaggaatggactcgtctt 183
Query: 499 tatgcaagtgg 509
|| ||||||||
Sbjct: 182 tacgcaagtgg 172
>gb|CB254245.1|CB254245 75-E015332-019-005-F19-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768F195Q 5-PRIME, mRNA sequence
Length = 709
Score = 133 bits (67), Expect = 5e-029
Identities = 340/431 (78%)
Strand = Plus / Plus
Query: 79 cgaatcatcaaggagacgcagcggctcctcagcgaaccagcgccggggattagcgcgtcg 138
|||||||||||||| || || || || || || ||||| || || ||||| || |||||
Sbjct: 108 cgaatcatcaaggaaactcaacgtctgcttagtgaacctgctcctgggataagtgcgtct 167
Query: 139 ccgtcggaagagaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccc 198
|| || || || || ||| | || |||||||| ||||| ||||| || | || || ||
Sbjct: 168 ccatcagaggaaaatatgagatatttcaatgttatgattcttggtcctactcaatctcct 227
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| |||||||||||| | ||||| || |||||||| |||||||| ||||| ||
Sbjct: 228 tatgaaggaggagttttcaagttggagctctttttgcctgaagaatatcctatggcagct 287
Query: 259 ccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggata 318
|| || ||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||
Sbjct: 288 cccaaggttaggtttctcaccaagatttaccatcctaacatcgacaagcttggaagaatc 347
Query: 319 tgcctcgacattcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctc 378
||||| ||||| || || ||||| |||||||| || || || ||||| || || || |
Sbjct: 348 tgccttgacatactgaaagacaagtggagtcctgcactacaaatacgaactgtgctcttg 407
Query: 379 agcattcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcg 438
|| || || || ||| | ||||| ||||| |||||||||||||| || || ||||| ||
Sbjct: 408 agtatccaagctcttttaagtgcaccaaacccagatgatcctctgtctgagaacatagct 467
Query: 439 aaacactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctg 498
|| || ||||| ||||| || |||||| | || ||||| ||||| |||||||| ||
Sbjct: 468 aagcattggaagagcaatgaggcagaagctgtggaaacagctaaggaatggactcgtctt 527
Query: 499 tatgcaagtgg 509
|| ||||||||
Sbjct: 528 tacgcaagtgg 538
>gb|AY052307.1| Arabidopsis thaliana At1g16890/F17F16.16 mRNA, complete cds
Length = 751
Score = 133 bits (67), Expect = 5e-029
Identities = 340/431 (78%)
Strand = Plus / Plus
Query: 79 cgaatcatcaaggagacgcagcggctcctcagcgaaccagcgccggggattagcgcgtcg 138
|||||||||||||| || || || || || || ||||| || || ||||| || |||||
Sbjct: 123 cgaatcatcaaggaaactcaacgtctgcttagtgaacctgctcctgggataagtgcgtct 182
Query: 139 ccgtcggaagagaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccc 198
|| || || || || ||| | || |||||||| ||||| ||||| || | || || ||
Sbjct: 183 ccatcagaggaaaatatgagatatttcaatgttatgattcttggtcctactcaatctcct 242
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| |||||||||||| | ||||| || |||||||| |||||||| ||||| ||
Sbjct: 243 tatgaaggaggagttttcaagttggagctctttttgcctgaagaatatcctatggcagct 302
Query: 259 ccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggata 318
|| || ||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||
Sbjct: 303 cccaaggttaggtttctcaccaagatttaccatcctaacatcgacaagcttggaagaatc 362
Query: 319 tgcctcgacattcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctc 378
||||| ||||| || || ||||| |||||||| || || || ||||| || || || |
Sbjct: 363 tgccttgacatactgaaagacaagtggagtcctgcactacaaatacgaactgtgctcttg 422
Query: 379 agcattcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcg 438
|| || || || ||| | ||||| ||||| |||||||||||||| || || ||||| ||
Sbjct: 423 agtatccaagctcttttaagtgcaccaaacccagatgatcctctgtctgagaacatagct 482
Query: 439 aaacactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctg 498
|| || ||||| ||||| || |||||| | || ||||| ||||| |||||||| ||
Sbjct: 483 aagcattggaagagcaatgaggcagaagctgtggaaacagctaaggaatggactcgtctt 542
Query: 499 tatgcaagtgg 509
|| ||||||||
Sbjct: 543 tacgcaagtgg 553
>gb|AY061926.1| Arabidopsis thaliana At1g16890/F17F16.16 mRNA, complete cds
Length = 462
Score = 133 bits (67), Expect = 5e-029
Identities = 340/431 (78%)
Strand = Plus / Plus
Query: 79 cgaatcatcaaggagacgcagcggctcctcagcgaaccagcgccggggattagcgcgtcg 138
|||||||||||||| || || || || || || ||||| || || ||||| || |||||
Sbjct: 25 cgaatcatcaaggaaactcaacgtctgcttagtgaacctgctcctgggataagtgcgtct 84
Query: 139 ccgtcggaagagaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccc 198
|| || || || || ||| | || |||||||| ||||| ||||| || | || || ||
Sbjct: 85 ccatcagaggaaaatatgagatatttcaatgttatgattcttggtcctactcaatctcct 144
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| |||||||||||| | ||||| || |||||||| |||||||| ||||| ||
Sbjct: 145 tatgaaggaggagttttcaagttggagctctttttgcctgaagaatatcctatggcagct 204
Query: 259 ccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggata 318
|| || ||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||
Sbjct: 205 cccaaggttaggtttctcaccaagatttaccatcctaacatcgacaagcttggaagaatc 264
Query: 319 tgcctcgacattcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctc 378
||||| ||||| || || ||||| |||||||| || || || ||||| || || || |
Sbjct: 265 tgccttgacatactgaaagacaagtggagtcctgcactacaaatacgaactgtgctcttg 324
Query: 379 agcattcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcg 438
|| || || || ||| | ||||| ||||| |||||||||||||| || || ||||| ||
Sbjct: 325 agtatccaagctcttttaagtgcaccaaacccagatgatcctctgtctgagaacatagct 384
Query: 439 aaacactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctg 498
|| || ||||| ||||| || |||||| | || ||||| ||||| |||||||| ||
Sbjct: 385 aagcattggaagagcaatgaggcagaagctgtggaaacagctaaggaatggactcgtctt 444
Query: 499 tatgcaagtgg 509
|| ||||||||
Sbjct: 445 tacgcaagtgg 455
>gb|AY086780.1| Arabidopsis thaliana clone 2763 mRNA, complete sequence
Length = 795
Score = 133 bits (67), Expect = 5e-029
Identities = 340/431 (78%)
Strand = Plus / Plus
Query: 79 cgaatcatcaaggagacgcagcggctcctcagcgaaccagcgccggggattagcgcgtcg 138
|||||||||||||| || || || || || || ||||| || || ||||| || |||||
Sbjct: 154 cgaatcatcaaggaaactcaacgtctgcttagtgaacctgctcctgggataagtgcgtct 213
Query: 139 ccgtcggaagagaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccc 198
|| || || || || ||| | || |||||||| ||||| ||||| || | || || ||
Sbjct: 214 ccatcagaggaaaatatgagatatttcaatgttatgattcttggtcctactcaatctcct 273
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| |||||||||||| | ||||| || |||||||| |||||||| ||||| ||
Sbjct: 274 tatgaaggaggagttttcaagttggagctctttttgcctgaagaatatcctatggcagct 333
Query: 259 ccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggata 318
|| || ||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||
Sbjct: 334 cccaaggttaggtttctcaccaagatttaccatcctaacatcgacaagcttggaagaatc 393
Query: 319 tgcctcgacattcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctc 378
||||| ||||| || || ||||| |||||||| || || || ||||| || || || |
Sbjct: 394 tgccttgacatactgaaagacaagtggagtcctgcactacaaatacgaactgtgctcttg 453
Query: 379 agcattcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcg 438
|| || || || ||| | ||||| ||||| |||||||||||||| || || ||||| ||
Sbjct: 454 agtatccaagctcttttaagtgcaccaaacccagatgatcctctgtctgagaacatagct 513
Query: 439 aaacactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctg 498
|| || ||||| ||||| || |||||| | || ||||| ||||| |||||||| ||
Sbjct: 514 aagcattggaagagcaatgaggcagaagctgtggaaacagctaaggaatggactcgtctt 573
Query: 499 tatgcaagtgg 509
|| ||||||||
Sbjct: 574 tacgcaagtgg 584
>ref|NM_101550.1| Arabidopsis thaliana ubiquitin conjugating enzyme/ ubiquitin-like
activating enzyme AT1G16890 transcript variant
AT1G16890.2 mRNA, complete cds
Length = 794
Score = 133 bits (67), Expect = 5e-029
Identities = 340/431 (78%)
Strand = Plus / Plus
Query: 79 cgaatcatcaaggagacgcagcggctcctcagcgaaccagcgccggggattagcgcgtcg 138
|||||||||||||| || || || || || || ||||| || || ||||| || |||||
Sbjct: 153 cgaatcatcaaggaaactcaacgtctgcttagtgaacctgctcctgggataagtgcgtct 212
Query: 139 ccgtcggaagagaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccc 198
|| || || || || ||| | || |||||||| ||||| ||||| || | || || ||
Sbjct: 213 ccatcagaggaaaatatgagatatttcaatgttatgattcttggtcctactcaatctcct 272
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| |||||||||||| | ||||| || |||||||| |||||||| ||||| ||
Sbjct: 273 tatgaaggaggagttttcaagttggagctctttttgcctgaagaatatcctatggcagct 332
Query: 259 ccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggata 318
|| || ||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||
Sbjct: 333 cccaaggttaggtttctcaccaagatttaccatcctaacatcgacaagcttggaagaatc 392
Query: 319 tgcctcgacattcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctc 378
||||| ||||| || || ||||| |||||||| || || || ||||| || || || |
Sbjct: 393 tgccttgacatactgaaagacaagtggagtcctgcactacaaatacgaactgtgctcttg 452
Query: 379 agcattcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcg 438
|| || || || ||| | ||||| ||||| |||||||||||||| || || ||||| ||
Sbjct: 453 agtatccaagctcttttaagtgcaccaaacccagatgatcctctgtctgagaacatagct 512
Query: 439 aaacactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctg 498
|| || ||||| ||||| || |||||| | || ||||| ||||| |||||||| ||
Sbjct: 513 aagcattggaagagcaatgaggcagaagctgtggaaacagctaaggaatggactcgtctt 572
Query: 499 tatgcaagtgg 509
|| ||||||||
Sbjct: 573 tacgcaagtgg 583
>ref|NM_179347.1| Arabidopsis thaliana ubiquitin conjugating enzyme/ ubiquitin-like
activating enzyme AT1G16890 transcript variant
AT1G16890.1 mRNA, complete cds
Length = 804
Score = 133 bits (67), Expect = 5e-029
Identities = 250/311 (80%)
Strand = Plus / Plus
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| |||||||||||| | ||||| || |||||||| |||||||| ||||| ||
Sbjct: 283 tatgaaggaggagttttcaagttggagctctttttgcctgaagaatatcctatggcagct 342
Query: 259 ccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggata 318
|| || ||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||
Sbjct: 343 cccaaggttaggtttctcaccaagatttaccatcctaacatcgacaagcttggaagaatc 402
Query: 319 tgcctcgacattcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctc 378
||||| ||||| || || ||||| |||||||| || || || ||||| || || || |
Sbjct: 403 tgccttgacatactgaaagacaagtggagtcctgcactacaaatacgaactgtgctcttg 462
Query: 379 agcattcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcg 438
|| || || || ||| | ||||| ||||| |||||||||||||| || || ||||| ||
Sbjct: 463 agtatccaagctcttttaagtgcaccaaacccagatgatcctctgtctgagaacatagct 522
Query: 439 aaacactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctg 498
|| || ||||| ||||| || |||||| | || ||||| ||||| |||||||| ||
Sbjct: 523 aagcattggaagagcaatgaggcagaagctgtggaaacagctaaggaatggactcgtctt 582
Query: 499 tatgcaagtgg 509
|| ||||||||
Sbjct: 583 tacgcaagtgg 593
>gb|DQ027049.1| Arabidopsis thaliana ubiquitinating enzyme (At1g16890) mRNA,
complete cds
Length = 462
Score = 133 bits (67), Expect = 5e-029
Identities = 340/431 (78%)
Strand = Plus / Plus
Query: 79 cgaatcatcaaggagacgcagcggctcctcagcgaaccagcgccggggattagcgcgtcg 138
|||||||||||||| || || || || || || ||||| || || ||||| || |||||
Sbjct: 25 cgaatcatcaaggaaactcaacgtctgcttagtgaacctgctcctgggataagtgcgtct 84
Query: 139 ccgtcggaagagaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccc 198
|| || || || || ||| | || |||||||| ||||| ||||| || | || || ||
Sbjct: 85 ccatcagaggaaaatatgagatatttcaatgttatgattcttggtcctactcaatctcct 144
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| |||||||||||| | ||||| || |||||||| |||||||| ||||| ||
Sbjct: 145 tatgaaggaggagttttcaagttggagctctttttgcctgaagaatatcctatggcagct 204
Query: 259 ccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggata 318
|| || ||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||
Sbjct: 205 cccaaggttaggtttctcaccaagatttaccatcctaacatcgacaagcttggaagaatc 264
Query: 319 tgcctcgacattcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctc 378
||||| ||||| || || ||||| |||||||| || || || ||||| || || || |
Sbjct: 265 tgccttgacatactgaaagacaagtggagtcctgcactacaaatacgaactgtgctcttg 324
Query: 379 agcattcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcg 438
|| || || || ||| | ||||| ||||| |||||||||||||| || || ||||| ||
Sbjct: 325 agtatccaagctcttttaagtgcaccaaacccagatgatcctctgtctgagaacatagct 384
Query: 439 aaacactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctg 498
|| || ||||| ||||| || |||||| | || ||||| ||||| |||||||| ||
Sbjct: 385 aagcattggaagagcaatgaggcagaagctgtggaaacagctaaggaatggactcgtctt 444
Query: 499 tatgcaagtgg 509
|| ||||||||
Sbjct: 445 tacgcaagtgg 455
>gb|AI993889.1|AI993889 701515319 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701515319, mRNA sequence
Length = 594
Score = 131 bits (66), Expect = 2e-028
Identities = 162/194 (83%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| || ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 40 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggaggagtt 99
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || |||||||| ||||| || ||||| || || || |||||||||
Sbjct: 100 ttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggttaggttt 159
Query: 274 ctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgacattctt 333
||||| || || |||||||| ||||||||||||||||| || || || || || |||||
Sbjct: 160 ctcacaaagatataccatcctaacattgacaagcttggaagaatctgtcttgatattctc 219
Query: 334 aaggacaaatggag 347
||||||||||||||
Sbjct: 220 aaggacaaatggag 233
Score = 58.0 bits (29), Expect = 3e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 382 attcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaa 441
||||| || ||||||||||| ||||| ||||||||||| || || || |||||||| ||
Sbjct: 371 attcaagctcttctgagtgcaccaaacccagatgatccgctttctgagaacattgctaag 430
Query: 442 cactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctgtat 501
|||||||| ||||| || |||||| | || ||||| ||||| ||||| || || |||
Sbjct: 431 cactggaagagtaatgaggcagaagctgtggatacagctaaggaatggacccgtctttat 490
Query: 502 gcaag 506
|||||
Sbjct: 491 gcaag 495
>gb|BP862006.1|BP862006 BP862006 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-49-J15 5',
mRNA sequence
Length = 403
Score = 131 bits (66), Expect = 2e-028
Identities = 162/194 (83%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| || ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 200 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggaggagtt 259
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || |||||||| ||||| || ||||| || || || |||||||||
Sbjct: 260 ttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggttaggttt 319
Query: 274 ctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgacattctt 333
||||| || || |||||||| ||||||||||||||||| || || || || || |||||
Sbjct: 320 ctcacaaagatataccatcctaacattgacaagcttggaagaatctgtcttgatattctc 379
Query: 334 aaggacaaatggag 347
||||||||||||||
Sbjct: 380 aaggacaaatggag 393
>ref|NM_001036221.1| Arabidopsis thaliana ubiquitin conjugating enzyme/ ubiquitin-like
activating enzyme AT1G78870 transcript variant
AT1G78870.3 mRNA, complete cds
Length = 1013
Score = 131 bits (66), Expect = 2e-028
Identities = 162/194 (83%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| || ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 234 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggaggagtt 293
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || |||||||| ||||| || ||||| || || || |||||||||
Sbjct: 294 ttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggttaggttt 353
Query: 274 ctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgacattctt 333
||||| || || |||||||| ||||||||||||||||| || || || || || |||||
Sbjct: 354 ctcacaaagatataccatcctaacattgacaagcttggaagaatctgtcttgatattctc 413
Query: 334 aaggacaaatggag 347
||||||||||||||
Sbjct: 414 aaggacaaatggag 427
Score = 58.0 bits (29), Expect = 3e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 382 attcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaa 441
||||| || ||||||||||| ||||| ||||||||||| || || || |||||||| ||
Sbjct: 565 attcaagctcttctgagtgcaccaaacccagatgatccgctttctgagaacattgctaag 624
Query: 442 cactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctgtat 501
|||||||| ||||| || |||||| | || ||||| ||||| ||||| || || |||
Sbjct: 625 cactggaagagtaatgaggcagaagctgtggatacagctaaggaatggacccgtctttat 684
Query: 502 gcaag 506
|||||
Sbjct: 685 gcaag 689
>gb|BP836421.1|BP836421 BP836421 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-16-G06 5',
mRNA sequence
Length = 401
Score = 127 bits (64), Expect = 3e-027
Identities = 130/152 (85%)
Strand = Plus / Plus
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| |||||||||||| | ||||| || |||||||| |||||||| ||||| ||
Sbjct: 241 tatgaaggaggagttttcaagttggagctctttttgcctgaagaatatcctatggcagct 300
Query: 259 ccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggata 318
|| || ||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||
Sbjct: 301 cccaaggttaggtttctcaccaagatttaccatcctaacatcgacaagcttggaagaatc 360
Query: 319 tgcctcgacattcttaaggacaaatggagtcc 350
||||| ||||| || || ||||| ||||||||
Sbjct: 361 tgccttgacatactgaaagacaagtggagtcc 392
>emb|BX813701.1|CNS0AEIF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB34ZF06 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 745
Score = 127 bits (64), Expect = 3e-027
Identities = 130/152 (85%)
Strand = Plus / Plus
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| |||||||||||| | ||||| || |||||||| |||||||| ||||| ||
Sbjct: 242 tatgaaggaggagttttcaagttggagctctttttgcctgaagaatatcctatggcagct 301
Query: 259 ccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggata 318
|| || ||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||
Sbjct: 302 cccaaggttaggtttctcaccaagatttaccatcctaacatcgacaagcttggaagaatc 361
Query: 319 tgcctcgacattcttaaggacaaatggagtcc 350
||||| ||||| || || ||||| ||||||||
Sbjct: 362 tgccttgacatactgaaagacaagtggagtcc 393
>gb|T43710.1|T43710 6973 Lambda-PRL2 Arabidopsis thaliana cDNA clone 122K3T7, mRNA
sequence
Length = 491
Score = 123 bits (62), Expect = 5e-026
Identities = 249/312 (79%)
Strand = Plus / Plus
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| |||||||||||| ||||| || |||||||| |||||||| ||||| ||
Sbjct: 13 tatgaaggaggagttttcaagtnggagctctttttgcctgaagaatatcctatggcagct 72
Query: 259 ccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggata 318
|| || ||||||||||| ||||| ||||||||||| ||||| ||||||||||| || ||
Sbjct: 73 cccaaggttaggtttctnaccaagatttaccatcctaacatcgacaagcttggaagaatc 132
Query: 319 tgcctcgacattcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctc 378
||||| ||||| || || ||||| |||||||| || || || ||||| || || || |
Sbjct: 133 tgccttgacatactgaaagacaagtggagtcctgcactacaaatacgaactgtgctcttg 192
Query: 379 agcattcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcg 438
|| || || || ||| | ||||| ||||| |||||||||||||| || || ||||| ||
Sbjct: 193 agtatccaagctcttttaagtgcaccaaacccagatgatcctctgtctgagaacatagct 252
Query: 439 aaacactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctg 498
|| || ||||| ||||| || |||||| | || ||||| ||||| |||||||| ||
Sbjct: 253 aagcattggaagagcaatgaggcagaagctgtggaaacagctaaggaatggactcgtctt 312
Query: 499 tatgcaagtggg 510
|| |||||||||
Sbjct: 313 tacgcaagtggg 324
>gb|Z34711.1|Z34711 ATTS3471 Strasbourg-A Arabidopsis thaliana cDNA clone FAFJ92 3',
mRNA sequence
Length = 364
Score = 119 bits (60), Expect = 8e-025
Identities = 159/192 (82%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| || ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 173 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggaggagtt 232
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || |||||||| ||||| || ||||| || || || |||||||||
Sbjct: 233 ttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggttaggttt 292
Query: 274 ctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctcgacattctt 333
||||| || || |||||||| ||||||||||||||||| || || || || || |||||
Sbjct: 293 ctcacaaagatataccatcctaacattgacaagcttggaagaatctgtcttgatattctc 352
Query: 334 aaggacaaatgg 345
|||| |||||||
Sbjct: 353 aagggcaaatgg 364
>gb|BE523894.1|BE523894 M43C2STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M43C2 5', mRNA sequence
Length = 396
Score = 117 bits (59), Expect = 3e-024
Identities = 203/251 (80%)
Strand = Plus / Plus
Query: 79 cgaatcatcaaggagacgcagcggctcctcagcgaaccagcgccggggattagcgcgtcg 138
|||||||||||||| || || || || || || ||||| || || ||||| || |||||
Sbjct: 98 cgaatcatcaaggaaactcaacgtctgcttagtgaacctgctcctgggataagtgcgtct 157
Query: 139 ccgtcggaagagaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccc 198
|| || || || || ||| | || |||||||| ||||| ||||| || | || || ||
Sbjct: 158 ccatcagaggaaaatatgagatatttcaatgttatgattcttggtcctactcaatctcct 217
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| |||||||||||| | ||||| || |||||||| |||||||| ||||| ||
Sbjct: 218 tatgaaggaggagttttcaagttggagctctttttgcctgaagaatatcctatggcagct 277
Query: 259 ccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggata 318
|| || ||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||
Sbjct: 278 cccaaggttaggtttctcaccaagatttaccatcctaacatcgacaagcttggaagaatc 337
Query: 319 tgcctcgacat 329
||||| |||||
Sbjct: 338 tgccttgacat 348
>gb|BP854585.1|BP854585 BP854585 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-23-M09 5',
mRNA sequence
Length = 373
Score = 117 bits (59), Expect = 3e-024
Identities = 113/131 (86%)
Strand = Plus / Plus
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| |||||||||||| | ||||| || |||||||| |||||||| ||||| ||
Sbjct: 241 tatgaaggaggagttttcaagttggagctctttttgcctgaagaatatcctatggcagct 300
Query: 259 ccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggata 318
|| || ||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||
Sbjct: 301 cccaaggttaggtttctcaccaagatttaccatcctaacatcgacaagcttggaagaatc 360
Query: 319 tgcctcgacat 329
||||| |||||
Sbjct: 361 tgccttgacat 371
>gb|AA040983.1|AA040983 24249 CD4-13 Arabidopsis thaliana cDNA clone E10E9T7, mRNA sequence
Length = 606
Score = 115 bits (58), Expect = 1e-023
Identities = 133/158 (84%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| || ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 145 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggaggagtt 204
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || |||||||| ||||| || ||||| || || || |||||||||
Sbjct: 205 ttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggttaggttt 264
Query: 274 ctcaccaaaatttaccatccgaacattgacaagcttgg 311
||||| || || |||||||| |||||||||||||||||
Sbjct: 265 ctcacaaagatataccatcctaacattgacaagcttgg 302
>gb|BP819994.1|BP819994 BP819994 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-53-B19 5',
mRNA sequence
Length = 398
Score = 107 bits (54), Expect = 3e-021
Identities = 132/158 (83%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| || ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 234 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggaggagtt 293
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || |||||||| ||||| || ||||| || || || |||||||||
Sbjct: 294 ttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggttaggttt 353
Query: 274 ctcaccaaaatttaccatccgaacattgacaagcttgg 311
||||| || || |||||||| |||||||| ||||||||
Sbjct: 354 ctcacaaagatataccatcctaacattgataagcttgg 391
>gb|T46680.1|T46680 9943 Lambda-PRL2 Arabidopsis thaliana cDNA clone 139O4T7, mRNA
sequence
Length = 453
Score = 103 bits (52), Expect = 5e-020
Identities = 102/119 (85%)
Strand = Plus / Plus
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| |||||||||||| | ||||| || |||||||| |||||||| ||||| ||
Sbjct: 206 tatgaaggaggagttttcaagttggagctctttttgcctgangaatatcctatggcagct 265
Query: 259 ccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggat 317
|| || ||||||||||| ||||| ||||||||||| ||||| | ||||||||| |||||
Sbjct: 266 cccaaggttaggtttctaaccaagatttaccatcctaacatcggcaagcttggaaggat 324
>gb|H37659.1|H37659 15788 Lambda-PRL2 Arabidopsis thaliana cDNA clone 184O11T7, mRNA
sequence
Length = 509
Score = 99.6 bits (50), Expect = 7e-019
Identities = 189/234 (80%), Gaps = 1/234 (0%)
Strand = Plus / Plus
Query: 79 cgaatcatcaaggagacgcagcggctcctcagcgaaccagcgccggggattagcgcgtcg 138
|||||||||||||| || || || || || || ||||| || || ||||| || |||||
Sbjct: 109 cgaatcatcaaggaaactcaacgtctgcttagtgaacctgctcctgggataagtgcgtct 168
Query: 139 ccgtcggaagagaacatgcggtacttcaatgtcatgatccttggccccgcacagtcaccc 198
|| || || || || ||| | || |||||||| ||||| ||||| || | || || ||
Sbjct: 169 ccatcagaggaaaatatgagatatttcaatgttatgattcttggtcctactcaatctcct 228
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| |||||||||||| | ||||| || |||||||| |||||||| ||||| ||
Sbjct: 229 tatgaaggaggagttttcaagttggagctctttttgcctgaagaatatcctatggcagct 288
Query: 259 ccgaaagttaggtttctcaccaaaattta-ccatccgaacattgacaagcttgg 311
|| || ||||||||||||||||| ||||| |||||| ||||| |||||||||||
Sbjct: 289 cccaaggttaggtttctcaccaagatttacccatcctaacatcgacaagcttgg 342
>gb|AV553815.1|AV553815 AV553815 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ73a08R 5', mRNA sequence
Length = 388
Score = 99.6 bits (50), Expect = 7e-019
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| |||||||||||| | ||||| || |||||||| |||||||| ||||| ||
Sbjct: 283 tatgaaggaggagttttcaagttggagctctttttgcctgaagaatatcctatggcagct 342
Query: 259 ccgaaagttaggtttctcaccaaaatttaccatccgaacattgaca 304
|| || ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 343 cccaaggttaggtttctcaccaagatttaccatcctaacatcgaca 388
>gb|BP851319.1|BP851319 BP851319 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-16-A08 5',
mRNA sequence
Length = 397
Score = 99.6 bits (50), Expect = 7e-019
Identities = 132/158 (83%), Gaps = 1/158 (0%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| || ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 234 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggaggagtt 293
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || |||||||| ||||| || ||||| || || || |||||||||
Sbjct: 294 ttcaagttggagctctttttgcctgaagaataccctatggcagctcccaaggttaggttt 353
Query: 274 ctcaccaaaatttaccatccgaacattgacaagcttgg 311
|||| || || |||||||| |||||||||||||||||
Sbjct: 354 -tcacaaagatataccatcctaacattgacaagcttgg 390
>gb|BP857352.1|BP857352 BP857352 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-33-E14 5',
mRNA sequence
Length = 375
Score = 97.6 bits (49), Expect = 3e-018
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| |||||||||||| | ||||| || |||||||| ||||| || ||||| ||
Sbjct: 245 tatgaaggaggagttttcaagttggagctctttttgcctgaagaataccctatggcagct 304
Query: 259 ccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagcttgg 311
|| || |||||||||||||| || || |||||||| |||||||||||||||||
Sbjct: 305 cccaaggttaggtttctcacaaagatataccatcctaacattgacaagcttgg 357
>gb|AV794908.1|AV794908 AV794908 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-15-C17 3',
mRNA sequence
Length = 424
Score = 95.6 bits (48), Expect = 1e-017
Identities = 135/164 (82%)
Strand = Plus / Minus
Query: 286 taccatccgaacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatgg 345
|||||||| ||||||||||||||||| || || || || || ||||| ||||||||||||
Sbjct: 414 taccatcctaacattgacaagcttggaagaatctgtcttgatattctcaaggacaaatgg 355
Query: 346 agtcccgctcttcagatacgtacagttctgctcagcattcaggcacttctgagtgcccca 405
|| || || || || ||||| ||||| || | || ||||| || ||||||||||| |||
Sbjct: 354 agccctgcactacaaatacgaacagtgctcttaagtattcaagctcttctgagtgcacca 295
Query: 406 aatccagatgatcctctctcagacaacattgcgaaacactggaa 449
|| ||||||||||| || || || |||||||| || ||||||||
Sbjct: 294 aacccagatgatccgctttctgagaacattgctaagcactggaa 251
>gb|BP837747.1|BP837747 BP837747 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-21-L19 5',
mRNA sequence
Length = 378
Score = 95.6 bits (48), Expect = 1e-017
Identities = 112/132 (84%), Gaps = 1/132 (0%)
Strand = Plus / Plus
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| ||||||| |||| | ||||| || |||||||| |||||||| ||||| ||
Sbjct: 241 tatgaaggaggagtttccaagttggagctctttttgcctgaagaatatcctatggcagct 300
Query: 259 ccgaaag-ttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggat 317
|| || | |||||||||||||||| ||||||||||| ||||| ||||||||||| || ||
Sbjct: 301 cccaagggttaggtttctcaccaagatttaccatcctaacatcgacaagcttggaagaat 360
Query: 318 atgcctcgacat 329
||||| |||||
Sbjct: 361 ctgccttgacat 372
>gb|CB264254.1|CB264254 77-E014659-035-002-I20-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA
clone MPIZp2000I202Q 5-PRIME, mRNA sequence
Length = 311
Score = 85.7 bits (43), Expect = 1e-014
Identities = 94/110 (85%), Gaps = 1/110 (0%)
Strand = Plus / Plus
Query: 199 tatgaaggtggagttttcaagcttgagctattcttgcctgaggaatatccaatggctgcc 258
|||||||| |||||| ||||| | ||||| || |||||||| || ||||| ||||| ||
Sbjct: 36 tatgaaggaggagttntcaagttggagctctttttgcctgaaga-tatcctatggcagct 94
Query: 259 ccgaaagttaggtttctcaccaaaatttaccatccgaacattgacaagct 308
|| || ||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 95 cccaaggttaggtttctcaccaagatttaccatcctaacatcgacaagct 144
>gb|BP565033.1|BP565033 BP565033 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-10-I23 3',
mRNA sequence
Length = 411
Score = 85.7 bits (43), Expect = 1e-014
Identities = 127/155 (81%)
Strand = Plus / Minus
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
||||||||||||||||| || || || || || ||||| |||||||||||||| || ||
Sbjct: 407 aacattgacaagcttggaagaatctgtcttgatattctcaaggacaaatggagccctgca 348
Query: 355 cttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagat 414
|| || ||||| ||||| || | || ||||| || ||||||||||| ||||| ||||||
Sbjct: 347 ctacaaatacgaacagtgctcttaagtattcaagctcttctgagtgcaccaaacccagat 288
Query: 415 gatcctctctcagacaacattgcgaaacactggaa 449
||||| || || || |||||||| || ||||||||
Sbjct: 287 gatccgctttctgagaacattgctaagcactggaa 253
>gb|AA712478.1|AA712478 32193 Lambda-PRL2 Arabidopsis thaliana cDNA clone 194K16T7, mRNA
sequence
Length = 452
Score = 81.8 bits (41), Expect = 2e-013
Identities = 194/246 (78%)
Strand = Plus / Plus
Query: 265 gttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctc 324
||||||||||| ||||| ||||||||||| ||||| ||||||||||| || || | |||
Sbjct: 21 gttaggtttctnaccaagatttaccatcctaacatcgacaagcttggaagaatctncctt 80
Query: 325 gacattcttaaggacaaatggagtcccgctcttcagatacgtacagttctgctcagcatt 384
||||| || || ||||| |||||||| || || || ||||| || || || | || ||
Sbjct: 81 gacatactgaaagacaagtggagtcctgcactacaaatacgaactgtgctcttnagtatc 140
Query: 385 caggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaacac 444
|| || ||| | ||||| ||||| |||||||||||||| || || ||||| || || ||
Sbjct: 141 caagctcttttaagtgcaccaaacccagatgatcctctgtctgagaacatagctaagcat 200
Query: 445 tggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctgtatgca 504
||||| ||||| || |||||| | || ||||| ||||| |||||||| || || |||
Sbjct: 201 tggaagagcaatgaggcagaagctgtggaaacagctaaggaatggactcgtctttacgca 260
Query: 505 agtggg 510
||||||
Sbjct: 261 agtggg 266
>gb|AV820658.1|AV820658 AV820658 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-11-J19 3',
mRNA sequence
Length = 420
Score = 79.8 bits (40), Expect = 7e-013
Identities = 170/212 (80%), Gaps = 1/212 (0%)
Strand = Plus / Minus
Query: 295 aacattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgct 354
||||||||||||||||| || || || || || ||||| |||||||||||||| || ||
Sbjct: 420 aacattgacaagcttgg-agaatctgtcttgatattctcaaggacaaatggagccctgca 362
Query: 355 cttcagatacgtacagttctgctcagcattcaggcacttctgagtgccccaaatccagat 414
|| || ||||| ||||| || | || ||||| || ||||||||||| ||||| ||||||
Sbjct: 361 ctacaaatacgaacagtgctcttaagtattcaagctcttctgagtgcaccaaacccagat 302
Query: 415 gatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgag 474
||||| || || || |||||||| || |||||||| ||||| || |||||| | ||
Sbjct: 301 gatccgctttctgagaacattgctaagcactggaagagtaatgaggcagaagctgtggat 242
Query: 475 acagcgaaggagtggactcgcctgtatgcaag 506
||||| ||||| ||||| || || ||||||||
Sbjct: 241 acagctaaggaatggacccgtctttatgcaag 210
>gb|BP822506.1|BP822506 BP822506 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-61-M20 5',
mRNA sequence
Length = 375
Score = 79.8 bits (40), Expect = 7e-013
Identities = 96/112 (85%), Gaps = 2/112 (1%)
Strand = Plus / Plus
Query: 199 tatgaaggtggagttttcaagcttg-agctattcttgcctgaggaatatccaatggctgc 257
|||||||| |||||||||||||| | |||| || | |||||| |||||||| ||||| ||
Sbjct: 242 tatgaaggaggagttttcaagctgggagctcttttggcctgaagaatatcctatggcagc 301
Query: 258 cccgaaag-ttaggtttctcaccaaaatttaccatccgaacattgacaagct 308
|| || | |||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 302 tcccaaggcttaggtttctcaccaagatttaccatcctaacatcgacaagct 353
>emb|BX813418.1|CNS0ACA7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB16ZE06 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1385
Score = 77.8 bits (39), Expect = 3e-012
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 265 gttaggtttctcaccaaaatttaccatccgaacattgacaagcttggtaggatatgcctc 324
|||||||||||||| || || |||||||| ||||||||||||||||| || || || ||
Sbjct: 877 gttaggtttctcacaaagatataccatcctaacattgacaagcttggaagaatctgtctt 936
Query: 325 gacattcttaaggacaaatggag 347
|| ||||| ||||||||||||||
Sbjct: 937 gatattctcaaggacaaatggag 959
Score = 58.0 bits (29), Expect = 3e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 382 attcaggcacttctgagtgccccaaatccagatgatcctctctcagacaacattgcgaaa 441
||||| || ||||||||||| ||||| ||||||||||| || || || |||||||| ||
Sbjct: 1097 attcaagctcttctgagtgcaccaaacccagatgatccgctttctgagaacattgctaag 1156
Query: 442 cactggaaatcaaatgaagctgaagcttttgagacagcgaaggagtggactcgcctgtat 501
|||||||| ||||| || |||||| | || ||||| ||||| ||||| || || |||
Sbjct: 1157 cactggaagagtaatgaggcagaagctgtggatacagctaaggaatggacccgtctttat 1216
Query: 502 gcaag 506
|||||
Sbjct: 1217 gcaag 1221
>gb|AV792906.1|AV792906 AV792906 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-17-D23 3',
mRNA sequence
Length = 417
Score = 73.8 bits (37), Expect = 4e-011
Identities = 134/165 (81%), Gaps = 1/165 (0%)
Strand = Plus / Minus
Query: 286 taccatccgaaca-ttgacaagcttggtaggatatgcctcgacattcttaaggacaaatg 344
|||||||| |||| ||||||||||||| || || || || || ||||| || ||||||||
Sbjct: 415 taccatcctaacagttgacaagcttggaagaatctgtcttgatattctcaaagacaaatg 356
Query: 345 gagtcccgctcttcagatacgtacagttctgctcagcattcaggcacttctgagtgcccc 404
||| || || || || ||||| ||||| || | || ||||| || ||||||||||| ||
Sbjct: 355 gagccctgcactacaaatacgaacagtgctcttaagtattcaagctcttctgagtgcacc 296
Query: 405 aaatccagatgatcctctctcagacaacattgcgaaacactggaa 449
||| ||||||||||| || || || |||||||| || ||||||||
Sbjct: 295 aaacccagatgatcccctttctgagaacattgctaagcactggaa 251
>gb|BP861202.1|BP861202 BP861202 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-46-N07 5',
mRNA sequence
Length = 364
Score = 73.8 bits (37), Expect = 4e-011
Identities = 103/125 (82%)
Strand = Plus / Plus
Query: 154 atgcggtacttcaatgtcatgatccttggccccgcacagtcaccctatgaaggtggagtt 213
|||||||| ||||| || ||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct: 234 atgcggtatttcaacgttatgattcttggtcctacacaatcaccttatgaaggaggagtt 293
Query: 214 ttcaagcttgagctattcttgcctgaggaatatccaatggctgccccgaaagttaggttt 273
|||||| | ||||| || | |||||| ||||| || ||||| || || || |||||||||
Sbjct: 294 ttcaagttggagctcttttggcctgaagaataccctatggcagctcccaaggttaggttt 353
Query: 274 ctcac 278
|||||
Sbjct: 354 ctcac 358
>gb|BP669230.1|BP669230 BP669230 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-30-D01 3',
mRNA sequence
Length = 406
Score = 71.9 bits (36), Expect = 2e-010
Identities = 169/212 (79%), Gaps = 1/212 (0%)
Strand = Plus / Minus
Query: 296 acattgacaagcttggtaggatatgcctcgacattcttaaggacaaatggagtcccgctc 355
|||||||||||||||| || || || || || ||||| |||||||||||||| || || |
Sbjct: 406 acattgacaagcttggaagaatctgtcttgatattctcaaggacaaatggagccctgcac 347
Query: 356 ttcagatacgtacagttctgctcagcattcaggcacttctga-gtgccccaaatccagat 414
| || ||||| ||||| || | || ||||| || ||||||| |||| ||||| ||||||
Sbjct: 346 tacaaatacgaacagtgctcttaagtattcaagctcttctgaggtgcaccaaacccagat 287
Query: 415 gatcctctctcagacaacattgcgaaacactggaaatcaaatgaagctgaagcttttgag 474
||||| || || || |||||||| || |||||||| ||||| || |||||| | ||
Sbjct: 286 gatccgctttctgagaacattgctaagcactggaagagtaatgaggcagaagctgtggat 227
Query: 475 acagcgaaggagtggactcgcctgtatgcaag 506
||||| ||||| ||||| || || ||||||||
Sbjct: 226 acagctaaggaatggacccgtctttatgcaag 195
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 321,746
Number of Sequences: 1013581
Number of extensions: 321746
Number of successful extensions: 22963
Number of sequences better than 0.5: 77
Number of HSP's better than 0.5 without gapping: 73
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 22273
Number of HSP's gapped (non-prelim): 687
length of query: 825
length of database: 908,940,872
effective HSP length: 20
effective length of query: 805
effective length of database: 888,669,252
effective search space: 715378747860
effective search space used: 715378747860
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)