BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 33531.2.1
(724 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU231094.1|AU231094 AU231094 RAFL21 Arabidopsis thaliana... 42 0.13
gb|CB257636.1|CB257636 54-E012732-014-002-K13-T7R MPIZ-ADIS... 42 0.13
gb|CD529200.1|CD529200 02B06 Arabidopsis Leaf Senescence Li... 42 0.13
gb|CD529400.1|CD529400 02M04 Arabidopsis Leaf Senescence Li... 42 0.13
gb|CD529682.1|CD529682 03L15 Arabidopsis Leaf Senescence Li... 42 0.13
gb|CD529761.1|CD529761 03P22 Arabidopsis Leaf Senescence Li... 42 0.13
gb|CD531541.1|CD531541 11C22 Arabidopsis Leaf Senescence Li... 42 0.13
gb|CD531865.1|CD531865 12F14 Arabidopsis Leaf Senescence Li... 42 0.13
gb|CD533531.1|CD533531 32G15 Arabidopsis Leaf Senescence Li... 42 0.13
emb|AX507379.1| Sequence 2074 from Patent WO0216655 42 0.13
emb|AX546171.1| Sequence 2 from Patent EP1243654 42 0.13
gb|BT004954.1| Arabidopsis thaliana clone U51050 unknown pr... 42 0.13
dbj|BD174505.1| Phytosulfokine precursor polypeptide of Ara... 42 0.13
emb|AX651572.1| Sequence 383 from Patent WO03000898 42 0.13
emb|AX642357.1| Sequence 13 from Patent WO02083901 42 0.13
emb|AX642358.1| Sequence 14 from Patent WO02083901 42 0.13
gb|AC004786.3| Arabidopsis thaliana chromosome 2 clone T20K... 42 0.13
tpg|BK000108.1| TPA: Arabidopsis thaliana putative phytosul... 42 0.13
dbj|AB029344.1| Arabidopsis thaliana AtPSK mRNA for phytosu... 42 0.13
dbj|AB052752.1| Arabidopsis thaliana AtPSK2 gene for prepro... 42 0.13
dbj|AK118870.1| Arabidopsis thaliana At2g22860 mRNA for unk... 42 0.13
ref|NM_127851.3| Arabidopsis thaliana ATPSK2 (PHYTOSULFOKIN... 42 0.13
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 42 0.13
>gb|AU231094.1|AU231094 AU231094 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-20-A04 3',
mRNA sequence
Length = 397
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 284 atgaggaggactttggtcgctcatactgattacatctatacccag 240
>gb|CB257636.1|CB257636 54-E012732-014-002-K13-T7R MPIZ-ADIS-014 Arabidopsis thaliana cDNA
clone MPIZp771K132Q 5-PRIME, mRNA sequence
Length = 599
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 245 atgaggaggactttggtcgctcatactgattacatctatacccag 289
>gb|CD529200.1|CD529200 02B06 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 417
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 243 atgaggaggactttggtcgctcatactgattacatctatacccag 287
>gb|CD529400.1|CD529400 02M04 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 420
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 218 atgaggaggactttggtcgctcatactgattacatctatacccag 262
>gb|CD529682.1|CD529682 03L15 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 290
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 7 atgaggaggactttggtcgctcatactgattacatctatacccag 51
>gb|CD529761.1|CD529761 03P22 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 452
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 217 atgaggaggactttggtcgctcatactgattacatctatacccag 261
>gb|CD531541.1|CD531541 11C22 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 397
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 218 atgaggaggactttggtcgctcatactgattacatctatacccag 262
>gb|CD531865.1|CD531865 12F14 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 519
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 236 atgaggaggactttggtcgctcatactgattacatctatacccag 280
>gb|CD533531.1|CD533531 32G15 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 360
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 79 atgaggaggactttggtcgctcatactgattacatctatacccag 123
>emb|AX507379.1| Sequence 2074 from Patent WO0216655
Length = 264
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 202 atgaggaggactttggtcgctcatactgattacatctatacccag 246
>emb|AX546171.1| Sequence 2 from Patent EP1243654
Length = 545
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 241 atgaggaggactttggtcgctcatactgattacatctatacccag 285
>gb|BT004954.1| Arabidopsis thaliana clone U51050 unknown protein (At2g22860) mRNA,
complete cds
Length = 295
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 202 atgaggaggactttggtcgctcatactgattacatctatacccag 246
>dbj|BD174505.1| Phytosulfokine precursor polypeptide of Arabidopsis, and gene
encoding the polypeptide
Length = 545
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 241 atgaggaggactttggtcgctcatactgattacatctatacccag 285
>emb|AX651572.1| Sequence 383 from Patent WO03000898
Length = 264
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 202 atgaggaggactttggtcgctcatactgattacatctatacccag 246
>emb|AX642357.1| Sequence 13 from Patent WO02083901
Length = 412
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 350 atgaggaggactttggtcgctcatactgattacatctatacccag 394
>emb|AX642358.1| Sequence 14 from Patent WO02083901
Length = 264
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 202 atgaggaggactttggtcgctcatactgattacatctatacccag 246
>gb|AC004786.3| Arabidopsis thaliana chromosome 2 clone T20K9 map CIC06C07, complete
sequence
Length = 86686
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 33718 atgaggaggactttggtcgctcatactgattacatctatacccag 33762
>tpg|BK000108.1| TPA: Arabidopsis thaliana putative phytosulfokine peptide precursor
(PSK2) mRNA, complete cds
Length = 310
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 248 atgaggaggactttggtcgctcatactgattacatctatacccag 292
>dbj|AB029344.1| Arabidopsis thaliana AtPSK mRNA for phytosulfokine precursor 2,
complete cds
Length = 545
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 241 atgaggaggactttggtcgctcatactgattacatctatacccag 285
>dbj|AB052752.1| Arabidopsis thaliana AtPSK2 gene for preprophytosulfokine 2
precursor, complete cds
Length = 4754
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 4471 atgaggaggactttggtcgctcatactgattacatctatacccag 4515
>dbj|AK118870.1| Arabidopsis thaliana At2g22860 mRNA for unknown protein, complete
cds, clone: RAFL21-20-A04
Length = 538
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 255 atgaggaggactttggtcgctcatactgattacatctatacccag 299
>ref|NM_127851.3| Arabidopsis thaliana ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR) AT2G22860
(ATPSK2) mRNA, complete cds
Length = 538
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 255 atgaggaggactttggtcgctcatactgattacatctatacccag 299
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 42.1 bits (21), Expect = 0.13
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 299 atgaggaggacgttgctcgctcacaccgactacatctacacccag 343
||||||||||| ||| ||||||| || || |||||||| ||||||
Sbjct: 9745095 atgaggaggactttggtcgctcatactgattacatctatacccag 9745139
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 357,527
Number of Sequences: 1013581
Number of extensions: 357527
Number of successful extensions: 29218
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28981
Number of HSP's gapped (non-prelim): 237
length of query: 724
length of database: 908,940,872
effective HSP length: 20
effective length of query: 704
effective length of database: 888,669,252
effective search space: 625623153408
effective search space used: 625623153408
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)