BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3345642.2.1
(600 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 74 3e-011
gb|AY062444.1| Arabidopsis thaliana Unknown protein (At1g18... 74 3e-011
gb|AY050967.1| Arabidopsis thaliana unknown protein (At1g18... 74 3e-011
gb|AC026238.2| Arabidopsis thaliana chromosome I BAC F25I16... 74 3e-011
emb|BX816997.1|CNS0AE1I Arabidopsis thaliana Full-length cD... 74 3e-011
ref|NM_101716.2| Arabidopsis thaliana unknown protein AT1G1... 74 3e-011
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 74 3e-011
gb|CC886587.1|CC886587 SALK_148781.48.20.x Arabidopsis thal... 68 2e-009
gb|CD532223.1|CD532223 26C7 Arabidopsis Leaf Senescence Lib... 60 5e-007
gb|CD534094.1|CD534094 35J17 Arabidopsis Leaf Senescence Li... 60 5e-007
gb|BP606087.1|BP606087 BP606087 RAFL16 Arabidopsis thaliana... 60 5e-007
gb|AV792420.1|AV792420 AV792420 RAFL7 Arabidopsis thaliana ... 52 1e-004
gb|BP664447.1|BP664447 BP664447 RAFL21 Arabidopsis thaliana... 52 1e-004
gb|BP794018.1|BP794018 BP794018 RAFL7 Arabidopsis thaliana ... 52 1e-004
gb|AY039515.1| Arabidopsis thaliana AT3g61130/T20K12_30 mRN... 50 4e-004
gb|BT000630.1| Arabidopsis thaliana unknown protein (At3g6... 50 4e-004
emb|AJ243015.1|ATH243015 Arabidopsis thaliana LGT1 gene, an... 50 4e-004
emb|BX824243.1|CNS0A7GQ Arabidopsis thaliana Full-length cD... 50 4e-004
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 50 4e-004
emb|AL137898.1|ATT20K12 Arabidopsis thaliana DNA chromosome... 50 4e-004
ref|NM_115977.2| Arabidopsis thaliana transferase, transfer... 50 4e-004
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 50 4e-004
gb|AV791274.1|AV791274 AV791274 RAFL7 Arabidopsis thaliana ... 48 0.002
gb|BP599973.1|BP599973 BP599973 RAFL16 Arabidopsis thaliana... 46 0.007
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 73.8 bits (37), Expect = 3e-011
Identities = 132/161 (81%), Gaps = 2/161 (1%)
Strand = Plus / Plus
Query: 13 gtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatctaaat 72
|||| |||||| |||||||| ||| | || | ||||| || ||| ||||||||||||||
Sbjct: 6397357 gtcaatggagctgtggaaacatgtcttgaagcctttcaccgatattacaagtatctaaat 6397416
Query: 73 ttttcgcatcctact-atcagctccaagattgatccacatacttgtggatgggcttttgg 131
|| ||| | || ||| |||||||| ||| | || ||||| | |||||||||||||||||
Sbjct: 6397417 ttctcgaaccc-actcatcagctcaaagttcgacccacaagcatgtggatgggcttttgg 6397475
Query: 132 aatgaacatttttgacttgatagcttggaggaaggcaaacg 172
|||||| ||||||| |||| ||||||||||| |||||||
Sbjct: 6397476 tatgaacgtttttgatctgatcgcttggaggaatgcaaacg 6397516
Score = 60.0 bits (30), Expect = 5e-007
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 289 agatggcatgtcttgggtctcgggtatgatgtagacatagatgatcgtctgattgagagt 348
|||||||||||||||||| | || || ||||| |||| ||| | |||||||| || |
Sbjct: 6397633 agatggcatgtcttgggtttaggttacgatgtgaacatcgataaccgtctgatcgaaaca 6397692
Query: 349 gctgctgttgtgcactataatggaaacatgaaaccctggctgaagctggctatt 402
|| ||||| | ||||||||||| |||||||| || ||||| ||||||||||||
Sbjct: 6397693 gcagctgtgattcactataatggtaacatgaagccttggctaaagctggctatt 6397746
>gb|AY062444.1| Arabidopsis thaliana Unknown protein (At1g18580; F25I16.8) mRNA,
complete cds
Length = 2133
Score = 73.8 bits (37), Expect = 3e-011
Identities = 132/161 (81%), Gaps = 2/161 (1%)
Strand = Plus / Plus
Query: 13 gtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatctaaat 72
|||| |||||| |||||||| ||| | || | ||||| || ||| ||||||||||||||
Sbjct: 1430 gtcaatggagctgtggaaacatgtcttgaagcctttcaccgatattacaagtatctaaat 1489
Query: 73 ttttcgcatcctact-atcagctccaagattgatccacatacttgtggatgggcttttgg 131
|| ||| | || ||| |||||||| ||| | || ||||| | |||||||||||||||||
Sbjct: 1490 ttctcgaaccc-actcatcagctcaaagttcgacccacaagcatgtggatgggcttttgg 1548
Query: 132 aatgaacatttttgacttgatagcttggaggaaggcaaacg 172
|||||| ||||||| |||| ||||||||||| |||||||
Sbjct: 1549 tatgaacgtttttgatctgatcgcttggaggaatgcaaacg 1589
Score = 60.0 bits (30), Expect = 5e-007
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 289 agatggcatgtcttgggtctcgggtatgatgtagacatagatgatcgtctgattgagagt 348
|||||||||||||||||| | || || ||||| |||| ||| | |||||||| || |
Sbjct: 1706 agatggcatgtcttgggtttaggttacgatgtgaacatcgataaccgtctgatcgaaaca 1765
Query: 349 gctgctgttgtgcactataatggaaacatgaaaccctggctgaagctggctatt 402
|| ||||| | ||||||||||| |||||||| || ||||| ||||||||||||
Sbjct: 1766 gcagctgtgattcactataatggtaacatgaagccttggctaaagctggctatt 1819
>gb|AY050967.1| Arabidopsis thaliana unknown protein (At1g18580) mRNA, complete cds
Length = 2044
Score = 73.8 bits (37), Expect = 3e-011
Identities = 132/161 (81%), Gaps = 2/161 (1%)
Strand = Plus / Plus
Query: 13 gtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatctaaat 72
|||| |||||| |||||||| ||| | || | ||||| || ||| ||||||||||||||
Sbjct: 1366 gtcaatggagctgtggaaacatgtcttgaagcctttcaccgatattacaagtatctaaat 1425
Query: 73 ttttcgcatcctact-atcagctccaagattgatccacatacttgtggatgggcttttgg 131
|| ||| | || ||| |||||||| ||| | || ||||| | |||||||||||||||||
Sbjct: 1426 ttctcgaaccc-actcatcagctcaaagttcgacccacaagcatgtggatgggcttttgg 1484
Query: 132 aatgaacatttttgacttgatagcttggaggaaggcaaacg 172
|||||| ||||||| |||| ||||||||||| |||||||
Sbjct: 1485 tatgaacgtttttgatctgatcgcttggaggaatgcaaacg 1525
Score = 60.0 bits (30), Expect = 5e-007
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 289 agatggcatgtcttgggtctcgggtatgatgtagacatagatgatcgtctgattgagagt 348
|||||||||||||||||| | || || ||||| |||| ||| | |||||||| || |
Sbjct: 1642 agatggcatgtcttgggtttaggttacgatgtgaacatcgataaccgtctgatcgaaaca 1701
Query: 349 gctgctgttgtgcactataatggaaacatgaaaccctggctgaagctggctatt 402
|| ||||| | ||||||||||| |||||||| || ||||| ||||||||||||
Sbjct: 1702 gcagctgtgattcactataatggtaacatgaagccttggctaaagctggctatt 1755
>gb|AC026238.2| Arabidopsis thaliana chromosome I BAC F25I16 genomic sequence, complete
sequence
Length = 44879
Score = 73.8 bits (37), Expect = 3e-011
Identities = 132/161 (81%), Gaps = 2/161 (1%)
Strand = Plus / Minus
Query: 13 gtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatctaaat 72
|||| |||||| |||||||| ||| | || | ||||| || ||| ||||||||||||||
Sbjct: 23762 gtcaatggagctgtggaaacatgtcttgaagcctttcaccgatattacaagtatctaaat 23703
Query: 73 ttttcgcatcctact-atcagctccaagattgatccacatacttgtggatgggcttttgg 131
|| ||| | || ||| |||||||| ||| | || ||||| | |||||||||||||||||
Sbjct: 23702 ttctcgaaccc-actcatcagctcaaagttcgacccacaagcatgtggatgggcttttgg 23644
Query: 132 aatgaacatttttgacttgatagcttggaggaaggcaaacg 172
|||||| ||||||| |||| ||||||||||| |||||||
Sbjct: 23643 tatgaacgtttttgatctgatcgcttggaggaatgcaaacg 23603
Score = 60.0 bits (30), Expect = 5e-007
Identities = 93/114 (81%)
Strand = Plus / Minus
Query: 289 agatggcatgtcttgggtctcgggtatgatgtagacatagatgatcgtctgattgagagt 348
|||||||||||||||||| | || || ||||| |||| ||| | |||||||| || |
Sbjct: 23486 agatggcatgtcttgggtttaggttacgatgtgaacatcgataaccgtctgatcgaaaca 23427
Query: 349 gctgctgttgtgcactataatggaaacatgaaaccctggctgaagctggctatt 402
|| ||||| | ||||||||||| |||||||| || ||||| ||||||||||||
Sbjct: 23426 gcagctgtgattcactataatggtaacatgaagccttggctaaagctggctatt 23373
>emb|BX816997.1|CNS0AE1I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH7ZH04 of Hormone Treated Callus of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 2036
Score = 73.8 bits (37), Expect = 3e-011
Identities = 132/161 (81%), Gaps = 2/161 (1%)
Strand = Plus / Plus
Query: 13 gtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatctaaat 72
|||| |||||| |||||||| ||| | || | ||||| || ||| ||||||||||||||
Sbjct: 1363 gtcaatggagctgtggaaacatgtcttgaagcctttcaccgatattacaagtatctaaat 1422
Query: 73 ttttcgcatcctact-atcagctccaagattgatccacatacttgtggatgggcttttgg 131
|| ||| | || ||| |||||||| ||| | || ||||| | |||||||||||||||||
Sbjct: 1423 ttctcgaaccc-actcatcagctcaaagttcgacccacaagcatgtggatgggcttttgg 1481
Query: 132 aatgaacatttttgacttgatagcttggaggaaggcaaacg 172
|||||| ||||||| |||| ||||||||||| |||||||
Sbjct: 1482 tatgaacgtttttgatctgatcgcttggaggaatgcaaacg 1522
Score = 60.0 bits (30), Expect = 5e-007
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 289 agatggcatgtcttgggtctcgggtatgatgtagacatagatgatcgtctgattgagagt 348
|||||||||||||||||| | || || ||||| |||| ||| | |||||||| || |
Sbjct: 1639 agatggcatgtcttgggtttaggttacgatgtgaacatcgataaccgtctgatcgaaaca 1698
Query: 349 gctgctgttgtgcactataatggaaacatgaaaccctggctgaagctggctatt 402
|| ||||| | ||||||||||| |||||||| || ||||| ||||||||||||
Sbjct: 1699 gcagctgtgattcactataatggtaacatgaagccttggctaaagctggctatt 1752
>ref|NM_101716.2| Arabidopsis thaliana unknown protein AT1G18580 mRNA, complete cds
Length = 2125
Score = 73.8 bits (37), Expect = 3e-011
Identities = 132/161 (81%), Gaps = 2/161 (1%)
Strand = Plus / Plus
Query: 13 gtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatctaaat 72
|||| |||||| |||||||| ||| | || | ||||| || ||| ||||||||||||||
Sbjct: 1429 gtcaatggagctgtggaaacatgtcttgaagcctttcaccgatattacaagtatctaaat 1488
Query: 73 ttttcgcatcctact-atcagctccaagattgatccacatacttgtggatgggcttttgg 131
|| ||| | || ||| |||||||| ||| | || ||||| | |||||||||||||||||
Sbjct: 1489 ttctcgaaccc-actcatcagctcaaagttcgacccacaagcatgtggatgggcttttgg 1547
Query: 132 aatgaacatttttgacttgatagcttggaggaaggcaaacg 172
|||||| ||||||| |||| ||||||||||| |||||||
Sbjct: 1548 tatgaacgtttttgatctgatcgcttggaggaatgcaaacg 1588
Score = 60.0 bits (30), Expect = 5e-007
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 289 agatggcatgtcttgggtctcgggtatgatgtagacatagatgatcgtctgattgagagt 348
|||||||||||||||||| | || || ||||| |||| ||| | |||||||| || |
Sbjct: 1705 agatggcatgtcttgggtttaggttacgatgtgaacatcgataaccgtctgatcgaaaca 1764
Query: 349 gctgctgttgtgcactataatggaaacatgaaaccctggctgaagctggctatt 402
|| ||||| | ||||||||||| |||||||| || ||||| ||||||||||||
Sbjct: 1765 gcagctgtgattcactataatggtaacatgaagccttggctaaagctggctatt 1818
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 73.8 bits (37), Expect = 3e-011
Identities = 132/161 (81%), Gaps = 2/161 (1%)
Strand = Plus / Plus
Query: 13 gtcattggagcagtggaaacttgtttagagtcgtttcatcggtatcacaagtatctaaat 72
|||| |||||| |||||||| ||| | || | ||||| || ||| ||||||||||||||
Sbjct: 6397533 gtcaatggagctgtggaaacatgtcttgaagcctttcaccgatattacaagtatctaaat 6397592
Query: 73 ttttcgcatcctact-atcagctccaagattgatccacatacttgtggatgggcttttgg 131
|| ||| | || ||| |||||||| ||| | || ||||| | |||||||||||||||||
Sbjct: 6397593 ttctcgaaccc-actcatcagctcaaagttcgacccacaagcatgtggatgggcttttgg 6397651
Query: 132 aatgaacatttttgacttgatagcttggaggaaggcaaacg 172
|||||| ||||||| |||| ||||||||||| |||||||
Sbjct: 6397652 tatgaacgtttttgatctgatcgcttggaggaatgcaaacg 6397692
Score = 60.0 bits (30), Expect = 5e-007
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 289 agatggcatgtcttgggtctcgggtatgatgtagacatagatgatcgtctgattgagagt 348
|||||||||||||||||| | || || ||||| |||| ||| | |||||||| || |
Sbjct: 6397809 agatggcatgtcttgggtttaggttacgatgtgaacatcgataaccgtctgatcgaaaca 6397868
Query: 349 gctgctgttgtgcactataatggaaacatgaaaccctggctgaagctggctatt 402
|| ||||| | ||||||||||| |||||||| || ||||| ||||||||||||
Sbjct: 6397869 gcagctgtgattcactataatggtaacatgaagccttggctaaagctggctatt 6397922
>gb|CC886587.1|CC886587 SALK_148781.48.20.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_148781.48.20.x,
DNA sequence
Length = 462
Score = 67.9 bits (34), Expect = 2e-009
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 115 tgtggatgggcttttggaatgaacatttttgacttgatagcttggaggaaggcaaacg 172
||||||||||||||||| |||||| ||||||| |||| ||||||||||| |||||||
Sbjct: 46 tgtggatgggcttttggtatgaacgtttttgatctgatcgcttggaggaatgcaaacg 103
Score = 44.1 bits (22), Expect = 0.027
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 361 cactataatggaaacatgaaaccctggctgaagctggctatt 402
||||||||||| |||| ||| || ||||| ||||||||||||
Sbjct: 292 cactataatgggaacacgaagccttggctaaagctggctatt 333
>gb|CD532223.1|CD532223 26C7 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 405
Score = 60.0 bits (30), Expect = 5e-007
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 289 agatggcatgtcttgggtctcgggtatgatgtagacatagatgatcgtctgattgagagt 348
|||||||||||||||||| | || || ||||| |||| ||| | |||||||| || |
Sbjct: 27 agatggcatgtcttgggtttaggttacgatgtgaacatcgataaccgtctgatcgaaaca 86
Query: 349 gctgctgttgtgcactataatggaaacatgaaaccctggctgaagctggctatt 402
|| ||||| | ||||||||||| |||||||| || ||||| ||||||||||||
Sbjct: 87 gcagctgtgattcactataatggtaacatgaagccttggctaaagctggctatt 140
>gb|CD534094.1|CD534094 35J17 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 405
Score = 60.0 bits (30), Expect = 5e-007
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 289 agatggcatgtcttgggtctcgggtatgatgtagacatagatgatcgtctgattgagagt 348
|||||||||||||||||| | || || ||||| |||| ||| | |||||||| || |
Sbjct: 27 agatggcatgtcttgggtttaggttacgatgtgaacatcgataaccgtctgatcgaaaca 86
Query: 349 gctgctgttgtgcactataatggaaacatgaaaccctggctgaagctggctatt 402
|| ||||| | ||||||||||| |||||||| || ||||| ||||||||||||
Sbjct: 87 gcagctgtgattcactataatggtaacatgaagccttggctaaagctggctatt 140
>gb|BP606087.1|BP606087 BP606087 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-69-H24 3',
mRNA sequence
Length = 426
Score = 60.0 bits (30), Expect = 5e-007
Identities = 93/114 (81%)
Strand = Plus / Minus
Query: 289 agatggcatgtcttgggtctcgggtatgatgtagacatagatgatcgtctgattgagagt 348
|||||||||||||||||| | || || ||||| |||| ||| | |||||||| || |
Sbjct: 390 agatggcatgtcttgggtttaggttacgatgtgaacatcgataaccgtctgatcgaaaca 331
Query: 349 gctgctgttgtgcactataatggaaacatgaaaccctggctgaagctggctatt 402
|| ||||| | ||||||||||| |||||||| || ||||| ||||||||||||
Sbjct: 330 gcagctgtgattcactataatggtaacatgaagccttggctaaagctggctatt 277
>gb|AV792420.1|AV792420 AV792420 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-14-P05 3',
mRNA sequence
Length = 432
Score = 52.0 bits (26), Expect = 1e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 361 cactataatggaaacatgaaaccctggctgaagctggctatt 402
||||||||||| |||||||| || ||||| ||||||||||||
Sbjct: 357 cactataatggtaacatgaagccttggctaaagctggctatt 316
>gb|BP664447.1|BP664447 BP664447 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-12-F17 3',
mRNA sequence
Length = 416
Score = 52.0 bits (26), Expect = 1e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 361 cactataatggaaacatgaaaccctggctgaagctggctatt 402
||||||||||| |||||||| || ||||| ||||||||||||
Sbjct: 174 cactataatggtaacatgaagccttggctaaagctggctatt 133
>gb|BP794018.1|BP794018 BP794018 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-58-L08 3',
mRNA sequence
Length = 420
Score = 52.0 bits (26), Expect = 1e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 361 cactataatggaaacatgaaaccctggctgaagctggctatt 402
||||||||||| |||||||| || ||||| ||||||||||||
Sbjct: 297 cactataatggtaacatgaagccttggctaaagctggctatt 256
>gb|AY039515.1| Arabidopsis thaliana AT3g61130/T20K12_30 mRNA, complete cds
Length = 2542
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 104 atccacatacttgtggatgggcttttggaatgaacat 140
||||| || ||||||||||||||| ||||||||||||
Sbjct: 1968 atccaaatgcttgtggatgggcttatggaatgaacat 2004
>gb|BT000630.1| Arabidopsis thaliana unknown protein (At3g61130/T20K12_30) mRNA,
complete cds
Length = 1920
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 104 atccacatacttgtggatgggcttttggaatgaacat 140
||||| || ||||||||||||||| ||||||||||||
Sbjct: 1646 atccaaatgcttgtggatgggcttatggaatgaacat 1682
>emb|AJ243015.1|ATH243015 Arabidopsis thaliana LGT1 gene, and partial FUSCA6 gene
Length = 5000
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 104 atccacatacttgtggatgggcttttggaatgaacat 140
||||| || ||||||||||||||| ||||||||||||
Sbjct: 3274 atccaaatgcttgtggatgggcttatggaatgaacat 3310
>emb|BX824243.1|CNS0A7GQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH32ZE03 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2452
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 104 atccacatacttgtggatgggcttttggaatgaacat 140
||||| || ||||||||||||||| ||||||||||||
Sbjct: 1919 atccaaatgcttgtggatgggcttatggaatgaacat 1955
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 104 atccacatacttgtggatgggcttttggaatgaacat 140
||||| || ||||||||||||||| ||||||||||||
Sbjct: 22583318 atccaaatgcttgtggatgggcttatggaatgaacat 22583354
>emb|AL137898.1|ATT20K12 Arabidopsis thaliana DNA chromosome 3, BAC clone T20K12
Length = 109155
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 104 atccacatacttgtggatgggcttttggaatgaacat 140
||||| || ||||||||||||||| ||||||||||||
Sbjct: 13179 atccaaatgcttgtggatgggcttatggaatgaacat 13215
>ref|NM_115977.2| Arabidopsis thaliana transferase, transferring glycosyl groups
AT3G61130 mRNA, complete cds
Length = 2546
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 104 atccacatacttgtggatgggcttttggaatgaacat 140
||||| || ||||||||||||||| ||||||||||||
Sbjct: 1968 atccaaatgcttgtggatgggcttatggaatgaacat 2004
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 104 atccacatacttgtggatgggcttttggaatgaacat 140
||||| || ||||||||||||||| ||||||||||||
Sbjct: 22636019 atccaaatgcttgtggatgggcttatggaatgaacat 22636055
>gb|AV791274.1|AV791274 AV791274 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-09-M14 3',
mRNA sequence
Length = 451
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 361 cactataatggaaacatgaaaccctggctgaagctggcta 400
||||||||||| |||||||| || ||||| ||||||||||
Sbjct: 311 cactataatggtaacatgaagccttggctaaagctggcta 272
>gb|BP599973.1|BP599973 BP599973 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-44-C09 3',
mRNA sequence
Length = 436
Score = 46.1 bits (23), Expect = 0.007
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 367 aatggaaacatgaaaccctggct 389
|||||||||||||||||||||||
Sbjct: 388 aatggaaacatgaaaccctggct 366
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 296,707
Number of Sequences: 1013581
Number of extensions: 296707
Number of successful extensions: 19930
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19417
Number of HSP's gapped (non-prelim): 496
length of query: 600
length of database: 908,940,872
effective HSP length: 20
effective length of query: 580
effective length of database: 888,669,252
effective search space: 515428166160
effective search space used: 515428166160
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)