BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204472.2.1
(757 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|T76279.1|T76279 11057 Lambda-PRL2 Arabidopsis thaliana c... 68 2e-009
gb|AA042665.1|AA042665 24881 CD4-13 Arabidopsis thaliana cD... 66 9e-009
gb|BE038162.1|BE038162 AA09F10 AA Arabidopsis thaliana cDNA... 66 9e-009
gb|AV831850.1|AV831850 AV831850 RAFL9 Arabidopsis thaliana ... 66 9e-009
gb|CB259169.1|CB259169 71-E9601-013-003-M18-t7r MPIZ-ADIS-0... 66 9e-009
gb|CB259752.1|CB259752 26-E011178-013-009-D07-T7R MPIZ-ADIS... 66 9e-009
gb|CB264218.1|CB264218 79-E014661-035-002-N20-T7R MPIZ-ADIS... 66 9e-009
gb|CB264561.1|CB264561 53-E013840-035-001-I13-T7R MPIZ-ADIS... 66 9e-009
gb|AV440692.1|AV440692 AV440692 Arabidopsis thaliana above-... 66 9e-009
gb|AV520277.1|AV520277 AV520277 Arabidopsis thaliana aboveg... 66 9e-009
gb|AV536731.1|AV536731 AV536731 Arabidopsis thaliana liquid... 66 9e-009
gb|BP562918.2|BP562918 BP562918 RAFL16 Arabidopsis thaliana... 66 9e-009
gb|CB252648.1|CB252648 20-E018427-019-008-G05-T7R MPIZ-ADIS... 66 9e-009
gb|CB252771.1|CB252771 17-E018440-019-009-B06-T7R MPIZ-ADIS... 66 9e-009
gb|CB252941.1|CB252941 13-E018440-019-009-J04-T7R MPIZ-ADIS... 66 9e-009
gb|CB252973.1|CB252973 12-E018439-019-009-H03-T7R MPIZ-ADIS... 66 9e-009
gb|CB253132.1|CB253132 09-E012997-019-004-A03-T7R MPIZ-ADIS... 66 9e-009
gb|CB254136.1|CB254136 78-E012992-019-004-K19-SP6r MPIZ-ADI... 66 9e-009
gb|CB254140.1|CB254140 78-E012997-019-004-K19-T7R MPIZ-ADIS... 66 9e-009
gb|CB254280.1|CB254280 74-E015392-019-006-C20-T7R MPIZ-ADIS... 66 9e-009
gb|CB254808.1|CB254808 58-E018440-019-009-D16-T7R MPIZ-ADIS... 66 9e-009
gb|M63166.1|ATHMERI5G Arabidopsis thaliana meri-5 gene, com... 66 9e-009
gb|AY035156.1| Arabidopsis thaliana putative xyloglucan end... 66 9e-009
gb|AY063027.1| Arabidopsis thaliana putative xyloglucan end... 66 9e-009
emb|AX507134.1| Sequence 1829 from Patent WO0216655 66 9e-009
emb|AX651600.1| Sequence 413 from Patent WO03000898 66 9e-009
gb|AY085867.1| Arabidopsis thaliana clone 19156 mRNA, compl... 66 9e-009
emb|BX841567.1|CNS09YH8 Arabidopsis thaliana Full-length cD... 66 9e-009
emb|BX827776.1|CNS0A2EQ Arabidopsis thaliana Full-length cD... 66 9e-009
emb|BX827180.1|CNS0A3QG Arabidopsis thaliana Full-length cD... 66 9e-009
emb|BX827295.1|CNS0A3PE Arabidopsis thaliana Full-length cD... 66 9e-009
emb|BX828132.1|CNS0A3RV Arabidopsis thaliana Full-length cD... 66 9e-009
emb|BX828320.1|CNS0A3UT Arabidopsis thaliana Full-length cD... 66 9e-009
emb|BX828349.1|CNS0A3XB Arabidopsis thaliana Full-length cD... 66 9e-009
emb|BX828351.1|CNS0A3Y7 Arabidopsis thaliana Full-length cD... 66 9e-009
emb|BX827292.1|CNS0A484 Arabidopsis thaliana Full-length cD... 66 9e-009
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 66 9e-009
dbj|D63508.1|ATHMERI5B Arabidopsis thaliana mRNA for endo x... 66 9e-009
emb|CQ803676.1| Sequence 87 from Patent WO2004035798 66 9e-009
emb|AL109796.1|ATF9N11 Arabidopsis thaliana DNA chromosome ... 66 9e-009
emb|AL161576.2|ATCHRIV72 Arabidopsis thaliana DNA chromosom... 66 9e-009
emb|X82683.1|ATMERI5DA A.thaliana meri5da gene 66 9e-009
ref|NM_119173.2| Arabidopsis thaliana MERI5B; hydrolase, ac... 66 9e-009
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 66 9e-009
gb|Z47598.1|Z47598 ATTS4454 Strasbourg-A Arabidopsis thalia... 64 4e-008
gb|AV828419.1|AV828419 AV828419 RAFL9 Arabidopsis thaliana ... 62 1e-007
gb|AF093672.1|AF093672 Arabidopsis thaliana xyloglucan endo... 62 1e-007
gb|AY093183.1| Arabidopsis thaliana putative xyloglucan end... 62 1e-007
gb|BT003385.1| Arabidopsis thaliana putative xyloglucan end... 62 1e-007
emb|AL049480.1|ATF14M19 Arabidopsis thaliana DNA chromosome... 62 1e-007
emb|AL161564.2|ATCHRIV64 Arabidopsis thaliana DNA chromosom... 62 1e-007
ref|NM_118714.3| Arabidopsis thaliana XTR9 (XYLOGLUCAN ENDO... 62 1e-007
gb|CB257543.1|CB257543 60-E011081-014-003-G16-T7R MPIZ-ADIS... 58 2e-006
gb|AI994459.1|AI994459 701498367 A. thaliana, Ohio State cl... 52 1e-004
gb|AV550921.1|AV550921 AV550921 Arabidopsis thaliana roots ... 52 1e-004
gb|BP803969.1|BP803969 BP803969 RAFL14 Arabidopsis thaliana... 52 1e-004
gb|R64778.1|R64778 13282 Lambda-PRL2 Arabidopsis thaliana c... 48 0.002
emb|BX828009.1|CNS0A3YN Arabidopsis thaliana Full-length cD... 48 0.002
gb|B23441.1|B23441 F17N9TFB IGF Arabidopsis thaliana genomi... 46 0.009
gb|BE520406.1|BE520406 M12C4STM Arabidopsis developing seed... 46 0.009
gb|BE526501.1|BE526501 M65B18STM Arabidopsis developing see... 46 0.009
gb|AV827119.1|AV827119 AV827119 RAFL9 Arabidopsis thaliana ... 46 0.009
gb|BP813272.1|BP813272 BP813272 RAFL19 Arabidopsis thaliana... 46 0.009
gb|BP813809.1|BP813809 BP813809 RAFL19 Arabidopsis thaliana... 46 0.009
gb|BP817545.1|BP817545 BP817545 RAFL19 Arabidopsis thaliana... 46 0.009
gb|BP820758.1|BP820758 BP820758 RAFL19 Arabidopsis thaliana... 46 0.009
gb|BP841854.1|BP841854 BP841854 RAFL21 Arabidopsis thaliana... 46 0.009
gb|BP853445.1|BP853445 BP853445 RAFL21 Arabidopsis thaliana... 46 0.009
gb|BP862064.1|BP862064 BP862064 RAFL21 Arabidopsis thaliana... 46 0.009
gb|BP866683.1|BP866683 BP866683 RAFL21 Arabidopsis thaliana... 46 0.009
gb|U43485.1|ATU43485 Arabidopsis thaliana xyloglucan endotr... 46 0.009
gb|AF163823.1|AF163823 Arabidopsis thaliana endoxyloglucan ... 46 0.009
emb|AX412411.1| Sequence 175 from Patent WO0222675 46 0.009
emb|AX412412.1| Sequence 176 from Patent WO0222675 46 0.009
gb|AY125495.1| Arabidopsis thaliana AT5g57550/MUA2_12 mRNA,... 46 0.009
gb|AY143939.1| Arabidopsis thaliana At5g57550/MUA2_12 mRNA,... 46 0.009
emb|BX833748.1|CNS0A0FK Arabidopsis thaliana Full-length cD... 46 0.009
dbj|AB011482.1| Arabidopsis thaliana genomic DNA, chromosom... 46 0.009
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 46 0.009
ref|NM_125136.3| Arabidopsis thaliana XTR3 (XYLOGLUCAN ENDO... 46 0.009
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 46 0.009
gb|B22152.1|B22152 T3M4-T7 TAMU Arabidopsis thaliana genomi... 44 0.035
gb|BP815549.1|BP815549 BP815549 RAFL19 Arabidopsis thaliana... 44 0.035
gb|BP839715.1|BP839715 BP839715 RAFL19 Arabidopsis thaliana... 44 0.035
gb|CL502674.1|CL502674 SAIL_714_H08.v2 SAIL Collection Arab... 42 0.14
gb|BE530652.1|BE530652 M78K02STM Arabidopsis developing see... 42 0.14
gb|AV825646.1|AV825646 AV825646 RAFL7 Arabidopsis thaliana ... 42 0.14
gb|AV544169.1|AV544169 AV544169 Arabidopsis thaliana roots ... 42 0.14
gb|AV552644.1|AV552644 AV552644 Arabidopsis thaliana roots ... 42 0.14
gb|AV554665.1|AV554665 AV554665 Arabidopsis thaliana roots ... 42 0.14
gb|CB252139.1|CB252139 34-E015393-019-006-D09-T7R MPIZ-ADIS... 42 0.14
gb|CB252195.1|CB252195 32-E015391-019-006-O07-T7R MPIZ-ADIS... 42 0.14
gb|CB252657.1|CB252657 21-E010007-019-001-I03-T7R MPIZ-ADIS... 42 0.14
gb|CB253128.1|CB253128 09-E012992-019-004-A03-SP6r MPIZ-ADI... 42 0.14
gb|CB253587.1|CB253587 93-E015393-019-006-J23-T7R MPIZ-ADIS... 42 0.14
gb|CB253619.1|CB253619 94-E010933-019-003-L23-T7R MPIZ-ADIS... 42 0.14
gb|CB254884.1|CB254884 56-E018440-019-009-P14-T7R MPIZ-ADIS... 42 0.14
gb|CB254942.1|CB254942 56-E010742-019-001-P19-T7R MPIZ-ADIS... 42 0.14
gb|CB255202.1|CB255202 48-E010696-019-002-O11-T7R MPIZ-ADIS... 42 0.14
gb|CB255401.1|CB255401 42-E018427-019-008-C11-T7R MPIZ-ADIS... 42 0.14
gb|CB255403.1|CB255403 42-E018429-019-008-D11-T7R MPIZ-ADIS... 42 0.14
gb|U43488.1|ATU43488 Arabidopsis thaliana xyloglucan endotr... 42 0.14
gb|AY062472.1| Arabidopsis thaliana xyloglucan endo-1, 4-be... 42 0.14
gb|AY093252.1| Arabidopsis thaliana xyloglucan endo-1, 4-be... 42 0.14
emb|AX506832.1| Sequence 1527 from Patent WO0216655 42 0.14
emb|AX651785.1| Sequence 637 from Patent WO03000898 42 0.14
emb|CQ804820.1| Sequence 1231 from Patent WO2004035798 42 0.14
ref|NM_118713.2| Arabidopsis thaliana XTR6 (XYLOGLUCAN ENDO... 42 0.14
>gb|T76279.1|T76279 11057 Lambda-PRL2 Arabidopsis thaliana cDNA clone 148P24T7, mRNA
sequence
Length = 487
Score = 67.9 bits (34), Expect = 2e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 293 gggttccagaggattgagtaagtgtggaaattggcggtngggtcgaaccagag 241
>gb|AA042665.1|AA042665 24881 CD4-13 Arabidopsis thaliana cDNA clone E12D1T7, mRNA sequence
Length = 604
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 71 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 19
>gb|BE038162.1|BE038162 AA09F10 AA Arabidopsis thaliana cDNA 5' similar to xyloglucan
endo-1:4-beta-d-glucanase precursor, mRNA sequence
Length = 725
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 500 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 448
>gb|AV831850.1|AV831850 AV831850 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-96-H22 5',
mRNA sequence
Length = 597
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 503 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 451
>gb|CB259169.1|CB259169 71-E9601-013-003-M18-t7r MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770M183Q 5-PRIME, mRNA sequence
Length = 609
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 507 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 455
>gb|CB259752.1|CB259752 26-E011178-013-009-D07-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770D079Q 5-PRIME, mRNA sequence
Length = 610
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 508 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 456
>gb|CB264218.1|CB264218 79-E014661-035-002-N20-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA
clone MPIZp2000N202Q 5-PRIME, mRNA sequence
Length = 561
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 488 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 436
>gb|CB264561.1|CB264561 53-E013840-035-001-I13-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA
clone MPIZp2000I131Q 5-PRIME, mRNA sequence
Length = 649
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 243 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 191
>gb|AV440692.1|AV440692 AV440692 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APZ06e12_f 3', mRNA
sequence
Length = 615
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 548 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 600
>gb|AV520277.1|AV520277 AV520277 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ13c01F 3', mRNA
sequence
Length = 606
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 526 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 578
>gb|AV536731.1|AV536731 AV536731 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII0476R 5', mRNA
sequence
Length = 561
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 121 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 69
>gb|BP562918.2|BP562918 BP562918 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-19-D08 5',
mRNA sequence
Length = 633
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 512 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 460
>gb|CB252648.1|CB252648 20-E018427-019-008-G05-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768G058Q 5-PRIME, mRNA sequence
Length = 659
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 193 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 141
>gb|CB252771.1|CB252771 17-E018440-019-009-B06-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768B069Q 5-PRIME, mRNA sequence
Length = 703
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 488 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 436
>gb|CB252941.1|CB252941 13-E018440-019-009-J04-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768J049Q 5-PRIME, mRNA sequence
Length = 560
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 488 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 436
>gb|CB252973.1|CB252973 12-E018439-019-009-H03-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768H039Q 5-PRIME, mRNA sequence
Length = 678
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 95 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 43
>gb|CB253132.1|CB253132 09-E012997-019-004-A03-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768A034Q 5-PRIME, mRNA sequence
Length = 557
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 492 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 440
>gb|CB254136.1|CB254136 78-E012992-019-004-K19-SP6r MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768K194Q 3-PRIME, mRNA sequence
Length = 582
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 413 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 465
>gb|CB254140.1|CB254140 78-E012997-019-004-K19-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768K194Q 5-PRIME, mRNA sequence
Length = 662
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 476 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 424
>gb|CB254280.1|CB254280 74-E015392-019-006-C20-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768C206Q 5-PRIME, mRNA sequence
Length = 677
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 487 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 435
>gb|CB254808.1|CB254808 58-E018440-019-009-D16-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768D169Q 5-PRIME, mRNA sequence
Length = 610
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 492 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 440
>gb|M63166.1|ATHMERI5G Arabidopsis thaliana meri-5 gene, complete cds
Length = 1593
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 872 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 820
>gb|AY035156.1| Arabidopsis thaliana putative xyloglucan endo-1,4-beta-D-glucanase
precursor (At4g30270) mRNA, complete cds
Length = 1115
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 505 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 453
>gb|AY063027.1| Arabidopsis thaliana putative xyloglucan endo-1,4-beta-D-glucanase
precursor (At4g30270) mRNA, complete cds
Length = 841
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 446 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 394
>emb|AX507134.1| Sequence 1829 from Patent WO0216655
Length = 810
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 446 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 394
>emb|AX651600.1| Sequence 413 from Patent WO03000898
Length = 810
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 446 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 394
>gb|AY085867.1| Arabidopsis thaliana clone 19156 mRNA, complete sequence
Length = 1148
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 536 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 484
>emb|BX841567.1|CNS09YH8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH68ZC10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 970
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 479 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 427
>emb|BX827776.1|CNS0A2EQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH20ZB05 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1079
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 494 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 442
>emb|BX827180.1|CNS0A3QG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS1ZE12 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1050
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 488 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 436
>emb|BX827295.1|CNS0A3PE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS35ZE09 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1058
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 473 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 421
>emb|BX828132.1|CNS0A3RV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH56ZB09 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 990
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 488 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 436
>emb|BX828320.1|CNS0A3UT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH76ZC08 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 973
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 439 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 387
>emb|BX828349.1|CNS0A3XB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH79ZE05 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1027
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 486 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 434
>emb|BX828351.1|CNS0A3Y7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH79ZG09 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1022
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 467 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 415
>emb|BX827292.1|CNS0A484 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS35ZA11 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 967
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 462 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 410
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 10732688 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 10732740
Score = 61.9 bits (31), Expect = 1e-007
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaac 241
||||||||| ||| || |||||||||||| || || ||||| ||||||||||| ||||||
Sbjct: 9043712 gggttccagtggacggtgtaggtgtggaaatccgcagtgggatcgaaccagagacggaac 9043653
Query: 242 tgc 244
|||
Sbjct: 9043652 tgc 9043650
Score = 44.1 bits (22), Expect = 0.035
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 364 gtagtaggcggtgacggtgccggcggagtt 393
||||||||||||||||||||| || |||||
Sbjct: 9043405 gtagtaggcggtgacggtgccagcagagtt 9043376
Score = 42.1 bits (21), Expect = 0.14
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| || ||||| |||||||||||
Sbjct: 9042004 gggttccagaggatagagtaagtgtggaaatcactagtgggatcgaaccagag 9041952
>dbj|D63508.1|ATHMERI5B Arabidopsis thaliana mRNA for endo xyloglucan transferase, complete
cds
Length = 1086
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 477 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 425
>emb|CQ803676.1| Sequence 87 from Patent WO2004035798
Length = 810
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 446 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 394
>emb|AL109796.1|ATF9N11 Arabidopsis thaliana DNA chromosome 4, BAC clone F9N11
Length = 87635
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 86541 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 86593
>emb|AL161576.2|ATCHRIV72 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 72
Length = 198924
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 159562 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 159614
>emb|X82683.1|ATMERI5DA A.thaliana meri5da gene
Length = 817
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 138 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 86
>ref|NM_119173.2| Arabidopsis thaliana MERI5B; hydrolase, acting on glycosyl bonds /
hydrolase, hydrolyzing O-glycosyl compounds AT4G30270
(MERI5B) mRNA, complete cds
Length = 1149
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 532 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 480
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| | |||||| ||||||||||||||
Sbjct: 14819917 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccagag 14819969
Score = 61.9 bits (31), Expect = 1e-007
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaac 241
||||||||| ||| || |||||||||||| || || ||||| ||||||||||| ||||||
Sbjct: 13130946 gggttccagtggacggtgtaggtgtggaaatccgcagtgggatcgaaccagagacggaac 13130887
Query: 242 tgc 244
|||
Sbjct: 13130886 tgc 13130884
Score = 44.1 bits (22), Expect = 0.035
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 364 gtagtaggcggtgacggtgccggcggagtt 393
||||||||||||||||||||| || |||||
Sbjct: 13130639 gtagtaggcggtgacggtgccagcagagtt 13130610
Score = 42.1 bits (21), Expect = 0.14
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| || ||||| |||||||||||
Sbjct: 13129238 gggttccagaggatagagtaagtgtggaaatcactagtgggatcgaaccagag 13129186
>gb|Z47598.1|Z47598 ATTS4454 Strasbourg-A Arabidopsis thaliana cDNA clone FAI281 5',
mRNA sequence
Length = 369
Score = 63.9 bits (32), Expect = 4e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccaga 233
|||||||||||||| ||||| |||||||| | |||||| |||||||||||||
Sbjct: 165 gggttccagaggattgagtaagtgtggaaattggcggttgggtcgaaccaga 114
>gb|AV828419.1|AV828419 AV828419 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-27-M15 5',
mRNA sequence
Length = 599
Score = 61.9 bits (31), Expect = 1e-007
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaac 241
||||||||| ||| || |||||||||||| || || ||||| ||||||||||| ||||||
Sbjct: 517 gggttccagtggacggtgtaggtgtggaaatccgcagtgggatcgaaccagagacggaac 458
Query: 242 tgc 244
|||
Sbjct: 457 tgc 455
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 356 gacgacaggtagtaggcggtgacggtgccggcggagtt 393
||||| ||||||||||||||||||||||| || |||||
Sbjct: 343 gacgataggtagtaggcggtgacggtgccagcagagtt 306
>gb|AF093672.1|AF093672 Arabidopsis thaliana xyloglucan endotransglycosylase (XTR9) mRNA,
complete cds
Length = 1100
Score = 61.9 bits (31), Expect = 1e-007
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaac 241
||||||||| ||| || |||||||||||| || || ||||| ||||||||||| ||||||
Sbjct: 505 gggttccagtggacggtgtaggtgtggaaatccgcagtgggatcgaaccagagacggaac 446
Query: 242 tgc 244
|||
Sbjct: 445 tgc 443
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 356 gacgacaggtagtaggcggtgacggtgccggcggagtt 393
||||| ||||||||||||||||||||||| || |||||
Sbjct: 331 gacgataggtagtaggcggtgacggtgccagcagagtt 294
>gb|AY093183.1| Arabidopsis thaliana putative xyloglucan endo-1, 4-beta-D-glucanase
(At4g25820) mRNA, complete cds
Length = 1068
Score = 61.9 bits (31), Expect = 1e-007
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaac 241
||||||||| ||| || |||||||||||| || || ||||| ||||||||||| ||||||
Sbjct: 516 gggttccagtggacggtgtaggtgtggaaatccgcagtgggatcgaaccagagacggaac 457
Query: 242 tgc 244
|||
Sbjct: 456 tgc 454
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 356 gacgacaggtagtaggcggtgacggtgccggcggagtt 393
||||| ||||||||||||||||||||||| || |||||
Sbjct: 342 gacgataggtagtaggcggtgacggtgccagcagagtt 305
>gb|BT003385.1| Arabidopsis thaliana putative xyloglucan endo-1, 4-beta-D-glucanase
(At4g25820) mRNA, complete cds
Length = 901
Score = 61.9 bits (31), Expect = 1e-007
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaac 241
||||||||| ||| || |||||||||||| || || ||||| ||||||||||| ||||||
Sbjct: 464 gggttccagtggacggtgtaggtgtggaaatccgcagtgggatcgaaccagagacggaac 405
Query: 242 tgc 244
|||
Sbjct: 404 tgc 402
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 356 gacgacaggtagtaggcggtgacggtgccggcggagtt 393
||||| ||||||||||||||||||||||| || |||||
Sbjct: 290 gacgataggtagtaggcggtgacggtgccagcagagtt 253
>emb|AL049480.1|ATF14M19 Arabidopsis thaliana DNA chromosome 4, BAC clone F14M19 (ESSA project)
Length = 91228
Score = 61.9 bits (31), Expect = 1e-007
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagaggcggaac 241
||||||||| ||| || |||||||||||| || || ||||| ||||||||||| ||||||
Sbjct: 28320 gggttccagtggacggtgtaggtgtggaaatccgcagtgggatcgaaccagagacggaac 28261
Query: 242 tgc 244
|||
Sbjct: 28260 tgc 28258
Score = 44.1 bits (22), Expect = 0.035
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 364 gtagtaggcggtgacggtgccggcggagtt 393
||||||||||||||||||||| || |||||
Sbjct: 28013 gtagtaggcggtgacggtgccagcagagtt 27984
Score = 42.1 bits (21), Expect = 0.14
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 182 gggttccagaggatggagtaggtgtggaagtcggcggtggggtcgaaccagag 234
|||||||||||||| ||||| |||||||| || ||||| |||||||||||
Sbjct: 26612 gggttccagaggatagagtaagtgtggaaatcactagtgggatcgaaccagag 26560
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 171,039
Number of Sequences: 1013581
Number of extensions: 171039
Number of successful extensions: 12027
Number of sequences better than 0.5: 108
Number of HSP's better than 0.5 without gapping: 108
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11577
Number of HSP's gapped (non-prelim): 450
length of query: 757
length of database: 908,940,872
effective HSP length: 20
effective length of query: 737
effective length of database: 888,669,252
effective search space: 654949238724
effective search space used: 654949238724
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)