BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198841.2.3
(792 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY070720.1| Arabidopsis thaliana AT5g25560/T14C9_100 mRN... 66 1e-008
ref|NM_122467.2| Arabidopsis thaliana protein binding / ubi... 66 1e-008
emb|BX831389.1|CNS0A1NP Arabidopsis thaliana Full-length cD... 58 2e-006
gb|BP847984.1|BP847984 BP847984 RAFL21 Arabidopsis thaliana... 54 4e-005
gb|BP853639.1|BP853639 BP853639 RAFL21 Arabidopsis thaliana... 54 4e-005
gb|AV560651.1|AV560651 AV560651 Arabidopsis thaliana green ... 52 1e-004
emb|AJ596108.1| Arabidopsis thaliana T-DNA flanking sequenc... 48 0.002
gb|AC006601.1|AC006601 Arabidopsis thaliana chromosome V ma... 48 0.002
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 48 0.002
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 48 0.002
gb|AV826141.1|AV826141 AV826141 RAFL8 Arabidopsis thaliana ... 46 0.009
gb|CB259861.1|CB259861 18-E011177-013-009-C06-T7R MPIZ-ADIS... 46 0.009
gb|CF774264.1|CF774264 AG_FSL_30B06 Arabidopsis ag-1 35S:AG... 46 0.009
gb|BP849322.1|BP849322 BP849322 RAFL21 Arabidopsis thaliana... 46 0.009
gb|BP852216.1|BP852216 BP852216 RAFL21 Arabidopsis thaliana... 46 0.009
gb|BP860241.1|BP860241 BP860241 RAFL21 Arabidopsis thaliana... 46 0.009
gb|BP861089.1|BP861089 BP861089 RAFL21 Arabidopsis thaliana... 46 0.009
gb|BP861307.1|BP861307 BP861307 RAFL21 Arabidopsis thaliana... 46 0.009
gb|BP866007.1|BP866007 BP866007 RAFL21 Arabidopsis thaliana... 46 0.009
gb|BP868217.1|BP868217 BP868217 RAFL21 Arabidopsis thaliana... 46 0.009
gb|AY052362.1| Arabidopsis thaliana AT5g22920/MRN17_15 mRNA... 46 0.009
gb|BT002635.1| Arabidopsis thaliana At5g22920/MRN17_15 gene... 46 0.009
gb|AY088138.1| Arabidopsis thaliana clone 41666 mRNA, compl... 46 0.009
gb|DQ059131.1| Arabidopsis thaliana RING finger family prot... 46 0.009
ref|NM_122198.2| Arabidopsis thaliana ubiquitin-protein lig... 46 0.009
gb|F14116.1|F14116 ATTS5038 Versailles-VB Arabidopsis thali... 44 0.036
gb|BP829596.1|BP829596 BP829596 RAFL19 Arabidopsis thaliana... 44 0.036
gb|BP841725.1|BP841725 BP841725 RAFL21 Arabidopsis thaliana... 44 0.036
gb|BP849385.1|BP849385 BP849385 RAFL21 Arabidopsis thaliana... 44 0.036
gb|BP849698.1|BP849698 BP849698 RAFL21 Arabidopsis thaliana... 44 0.036
gb|BP854359.1|BP854359 BP854359 RAFL21 Arabidopsis thaliana... 44 0.036
gb|BP860319.1|BP860319 BP860319 RAFL21 Arabidopsis thaliana... 44 0.036
gb|BP865031.1|BP865031 BP865031 RAFL21 Arabidopsis thaliana... 44 0.036
gb|BP869042.1|BP869042 BP869042 RAFL21 Arabidopsis thaliana... 44 0.036
dbj|AB005243.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.14
>gb|AY070720.1| Arabidopsis thaliana AT5g25560/T14C9_100 mRNA sequence
Length = 2903
Score = 65.9 bits (33), Expect = 1e-008
Identities = 156/197 (79%)
Strand = Plus / Plus
Query: 528 tgtggcactgaacaggaggtgcgacaagtatgtatcaattgcggtgtttgcatggggaaa 587
||||| |||||||| |||||| | ||| | |||||| | || || || |||||||||||
Sbjct: 2012 tgtggtactgaacaagaggtgggccaaatttgtatccactgtggagtgtgcatggggaag 2071
Query: 588 tacttctgtggtttgtgcaaactcttcgacgatgatgtctctaaacagcagtatcactgc 647
||||||||| | ||||| |||| ||| |||||| |||||| | ||||| ||||||
Sbjct: 2072 tacttctgtaaagtctgcaagctctacgatgatgatacgtctaaaaaacagtaccactgc 2131
Query: 648 aacggatgtggaatatgtagaatcggagggagggagaatttcttccactgttcaaaatgt 707
| || |||||||| || ||||||||||| | || |||||||| ||||||| || |||
Sbjct: 2132 gatgggtgtggaatttgcagaatcggaggacgtgaaaatttctttcactgttacaagtgt 2191
Query: 708 ggatgttgctattcaat 724
|| ||||| ||||||||
Sbjct: 2192 ggctgttgttattcaat 2208
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 366 tgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgat 425
||||||||||| ||||| || || |||| |||||||||||||| ||||| || |||| |
Sbjct: 1850 tgtccacattacagaagaaggtgttgcattagagctccttgctgtaatgagatctttggt 1909
Query: 426 tgcc 429
||||
Sbjct: 1910 tgcc 1913
>ref|NM_122467.2| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/
zinc ion binding AT5G25560 mRNA, complete cds
Length = 1034
Score = 65.9 bits (33), Expect = 1e-008
Identities = 156/197 (79%)
Strand = Plus / Plus
Query: 528 tgtggcactgaacaggaggtgcgacaagtatgtatcaattgcggtgtttgcatggggaaa 587
||||| |||||||| |||||| | ||| | |||||| | || || || |||||||||||
Sbjct: 456 tgtggtactgaacaagaggtgggccaaatttgtatccactgtggagtgtgcatggggaag 515
Query: 588 tacttctgtggtttgtgcaaactcttcgacgatgatgtctctaaacagcagtatcactgc 647
||||||||| | ||||| |||| ||| |||||| |||||| | ||||| ||||||
Sbjct: 516 tacttctgtaaagtctgcaagctctacgatgatgatacgtctaaaaaacagtaccactgc 575
Query: 648 aacggatgtggaatatgtagaatcggagggagggagaatttcttccactgttcaaaatgt 707
| || |||||||| || ||||||||||| | || |||||||| ||||||| || |||
Sbjct: 576 gatgggtgtggaatttgcagaatcggaggacgtgaaaatttctttcactgttacaagtgt 635
Query: 708 ggatgttgctattcaat 724
|| ||||| ||||||||
Sbjct: 636 ggctgttgttattcaat 652
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 360 tatgggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatt 419
||||| ||||||||||| ||||| || || |||| |||||||||||||| ||||| ||
Sbjct: 288 tatggatgtccacattacagaagaaggtgttgcattagagctccttgctgtaatgagatc 347
Query: 420 tttgattgcc 429
|||| |||||
Sbjct: 348 tttggttgcc 357
>emb|BX831389.1|CNS0A1NP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS85ZE03 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2640
Score = 58.0 bits (29), Expect = 2e-006
Identities = 155/197 (78%)
Strand = Plus / Plus
Query: 528 tgtggcactgaacaggaggtgcgacaagtatgtatcaattgcggtgtttgcatggggaaa 587
||||| |||||||| |||||| | ||| | |||||| | || || || |||||||||||
Sbjct: 1815 tgtggtactgaacaagaggtgggccaaatttgtatccactgtggagtgtgcatggggaag 1874
Query: 588 tacttctgtggtttgtgcaaactcttcgacgatgatgtctctaaacagcagtatcactgc 647
||||||||| | ||||| |||| ||| |||||| |||||| | ||||| ||||||
Sbjct: 1875 tacttctgtaaagtctgcaagctctacgatgatgatacgtctaaaaaacagtaccactgc 1934
Query: 648 aacggatgtggaatatgtagaatcggagggagggagaatttcttccactgttcaaaatgt 707
| || |||||||| || ||||||||||| | || ||| |||| ||||||| || |||
Sbjct: 1935 gatgggtgtggaatttgcagaatcggaggacgtgaaaatctctttcactgttacaagtgt 1994
Query: 708 ggatgttgctattcaat 724
|| ||||| ||||||||
Sbjct: 1995 ggctgttgttattcaat 2011
>gb|BP847984.1|BP847984 BP847984 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-03-M23 5',
mRNA sequence
Length = 388
Score = 54.0 bits (27), Expect = 4e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 363 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 422
|||||||||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 225 gggtgtccacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 284
Query: 423 gattgccgacactgccacaatgaaactaagaattc 457
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 285 gattgcagacattgccacaacgaagctaaggattc 319
>gb|BP853639.1|BP853639 BP853639 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-58-P07 5',
mRNA sequence
Length = 394
Score = 54.0 bits (27), Expect = 4e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 363 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 422
|||||||||||||||||||| ||||| || ||||| || || || |||| |||||
Sbjct: 221 gggtgtccacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttg 280
Query: 423 gattgccgacactgccacaatgaaactaagaattc 457
||||||||||| |||||||| ||| ||||| ||||
Sbjct: 281 gattgccgacattgccacaacgaagctaaggattc 315
>gb|AV560651.1|AV560651 AV560651 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ138c08F 3', mRNA sequence
Length = 594
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 360 tatgggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatt 419
||||| ||||||||||| ||||| || || |||| |||||||||||||| ||||| ||
Sbjct: 307 tatggatgtccacattacagaagaaggtgttgcattagagctccttgctgtaatgagatc 248
Query: 420 tttgattgcc 429
|||| |||||
Sbjct: 247 tttggttgcc 238
Score = 42.1 bits (21), Expect = 0.14
Identities = 57/69 (82%)
Strand = Plus / Minus
Query: 528 tgtggcactgaacaggaggtgcgacaagtatgtatcaattgcggtgtttgcatggggaaa 587
||||| |||||||| |||||| | ||| | |||||| | || || || |||||||||||
Sbjct: 139 tgtggtactgaacaagaggtgggccaaatttgtatccactgtggagtgtgcatggggaag 80
Query: 588 tacttctgt 596
|||||||||
Sbjct: 79 tacttctgt 71
>emb|AJ596108.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
429B01, genomic survey sequence
Length = 876
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 366 tgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgat 425
||||||||||| ||||| || || |||| |||||||||||||| ||||| || |||| |
Sbjct: 413 tgtccacattacagaagaaggtgttgcattagagctccttgctgtaatgagatctttggt 354
Query: 426 tgcc 429
||||
Sbjct: 353 tgcc 350
>gb|AC006601.1|AC006601 Arabidopsis thaliana chromosome V map near 60.5 cM, complete sequence
Length = 110684
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 366 tgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgat 425
||||||||||| ||||| || || |||| |||||||||||||| ||||| || |||| |
Sbjct: 57537 tgtccacattacagaagaaggtgttgcattagagctccttgctgtaatgagatctttggt 57596
Query: 426 tgcc 429
||||
Sbjct: 57597 tgcc 57600
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 366 tgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgat 425
||||||||||| ||||| || || |||| |||||||||||||| ||||| || |||| |
Sbjct: 8390120 tgtccacattacagaagaaggtgttgcattagagctccttgctgtaatgagatctttggt 8390179
Query: 426 tgcc 429
||||
Sbjct: 8390180 tgcc 8390183
Score = 42.1 bits (21), Expect = 0.14
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 364 ggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttg 423
||||| ||||||||||||| ||||| || ||||| || || || |||| |||||||
Sbjct: 7305686 ggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagatttttg 7305745
Query: 424 attgccgacactgccacaatgaaactaag 452
||||| |||| |||||||| ||| |||||
Sbjct: 7305746 attgcagacattgccacaacgaagctaag 7305774
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 48.1 bits (24), Expect = 0.002
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 366 tgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttgat 425
||||||||||| ||||| || || |||| |||||||||||||| ||||| || |||| |
Sbjct: 8899750 tgtccacattacagaagaaggtgttgcattagagctccttgctgtaatgagatctttggt 8899809
Query: 426 tgcc 429
||||
Sbjct: 8899810 tgcc 8899813
Score = 42.1 bits (21), Expect = 0.14
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 364 ggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttg 423
||||| ||||||||||||| ||||| || ||||| || || || |||| |||||||
Sbjct: 7665318 ggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagatttttg 7665377
Query: 424 attgccgacactgccacaatgaaactaag 452
||||| |||| |||||||| ||| |||||
Sbjct: 7665378 attgcagacattgccacaacgaagctaag 7665406
>gb|AV826141.1|AV826141 AV826141 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-09-P06 5',
mRNA sequence
Length = 632
Score = 46.1 bits (23), Expect = 0.009
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 363 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 422
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 229 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 288
Query: 423 gattgccgacactgccacaatgaaactaagaattc 457
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 289 gattgcagacattgccacaacgaagctaaggattc 323
>gb|CB259861.1|CB259861 18-E011177-013-009-C06-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770C069Q 5-PRIME, mRNA sequence
Length = 473
Score = 46.1 bits (23), Expect = 0.009
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 363 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 422
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 187 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 246
Query: 423 gattgccgacactgccacaatgaaactaagaattc 457
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 247 gattgcagacattgccacaacgaagctaaggattc 281
>gb|CF774264.1|CF774264 AG_FSL_30B06 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 30B06, mRNA sequence
Length = 399
Score = 46.1 bits (23), Expect = 0.009
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 654 tgtggaatatgtagaatcggagggagggagaatttcttccactgttcaaaatgtggatgt 713
|||||||| || ||||||||||| | || |||||||| ||||||| || ||||| |||
Sbjct: 15 tgtggaatttgcagaatcggaggacgtgaaaatttctttcactgttacaagtgtggctgt 74
Query: 714 tgctattcaat 724
|| ||||||||
Sbjct: 75 tgttattcaat 85
>gb|BP849322.1|BP849322 BP849322 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-08-L05 5',
mRNA sequence
Length = 385
Score = 46.1 bits (23), Expect = 0.009
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 363 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 422
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 233 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 292
Query: 423 gattgccgacactgccacaatgaaactaagaattc 457
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 293 gattgcagacattgccacaacgaagctaaggattc 327
>gb|BP852216.1|BP852216 BP852216 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-19-C05 5',
mRNA sequence
Length = 376
Score = 46.1 bits (23), Expect = 0.009
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 363 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 422
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 225 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 284
Query: 423 gattgccgacactgccacaatgaaactaagaattc 457
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 285 gattgcagacattgccacaacgaagctaaggattc 319
>gb|BP860241.1|BP860241 BP860241 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-43-H23 5',
mRNA sequence
Length = 352
Score = 46.1 bits (23), Expect = 0.009
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 363 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 422
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 226 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 285
Query: 423 gattgccgacactgccacaatgaaactaagaattc 457
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 286 gattgcagacattgccacaacgaagctaaggattc 320
>gb|BP861089.1|BP861089 BP861089 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-46-F13 5',
mRNA sequence
Length = 366
Score = 46.1 bits (23), Expect = 0.009
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 363 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 422
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 224 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 283
Query: 423 gattgccgacactgccacaatgaaactaagaattc 457
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 284 gattgcagacattgccacaacgaagctaaggattc 318
>gb|BP861307.1|BP861307 BP861307 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-47-D07 5',
mRNA sequence
Length = 390
Score = 46.1 bits (23), Expect = 0.009
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 363 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 422
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 226 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 285
Query: 423 gattgccgacactgccacaatgaaactaagaattc 457
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 286 gattgcagacattgccacaacgaagctaaggattc 320
>gb|BP866007.1|BP866007 BP866007 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-76-D20 5',
mRNA sequence
Length = 391
Score = 46.1 bits (23), Expect = 0.009
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 363 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 422
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 226 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 285
Query: 423 gattgccgacactgccacaatgaaactaagaattc 457
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 286 gattgcagacattgccacaacgaagctaaggattc 320
>gb|BP868217.1|BP868217 BP868217 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-83-J17 5',
mRNA sequence
Length = 385
Score = 46.1 bits (23), Expect = 0.009
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 363 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 422
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 224 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 283
Query: 423 gattgccgacactgccacaatgaaactaagaattc 457
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 284 gattgcagacattgccacaacgaagctaaggattc 318
>gb|AY052362.1| Arabidopsis thaliana AT5g22920/MRN17_15 mRNA, complete cds
Length = 1183
Score = 46.1 bits (23), Expect = 0.009
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 363 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 422
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 227 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 286
Query: 423 gattgccgacactgccacaatgaaactaagaattc 457
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 287 gattgcagacattgccacaacgaagctaaggattc 321
>gb|BT002635.1| Arabidopsis thaliana At5g22920/MRN17_15 gene, complete cds
Length = 876
Score = 46.1 bits (23), Expect = 0.009
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 363 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 422
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 76 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 135
Query: 423 gattgccgacactgccacaatgaaactaagaattc 457
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 136 gattgcagacattgccacaacgaagctaaggattc 170
>gb|AY088138.1| Arabidopsis thaliana clone 41666 mRNA, complete sequence
Length = 1145
Score = 46.1 bits (23), Expect = 0.009
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 363 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 422
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 227 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 286
Query: 423 gattgccgacactgccacaatgaaactaagaattc 457
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 287 gattgcagacattgccacaacgaagctaaggattc 321
>gb|DQ059131.1| Arabidopsis thaliana RING finger family protein (At5g22920) mRNA,
complete cds
Length = 876
Score = 46.1 bits (23), Expect = 0.009
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 363 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 422
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 76 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 135
Query: 423 gattgccgacactgccacaatgaaactaagaattc 457
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 136 gattgcagacattgccacaacgaagctaaggattc 170
>ref|NM_122198.2| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding
AT5G22920 mRNA, complete cds
Length = 1262
Score = 46.1 bits (23), Expect = 0.009
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 363 gggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaattttt 422
|||||| ||||||||||||| ||||| || ||||| || || || |||| ||||||
Sbjct: 228 gggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagattttt 287
Query: 423 gattgccgacactgccacaatgaaactaagaattc 457
|||||| |||| |||||||| ||| ||||| ||||
Sbjct: 288 gattgcagacattgccacaacgaagctaaggattc 322
>gb|F14116.1|F14116 ATTS5038 Versailles-VB Arabidopsis thaliana cDNA clone VBVXG10,
mRNA sequence
Length = 410
Score = 44.1 bits (22), Expect = 0.036
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 412 atgaaatttttgattgccgacactgccacaatgaaactaagaattc 457
|||| |||||||||||| |||| |||||||| ||| ||||| ||||
Sbjct: 239 atgagatttttgattgcagacattgccacaacgaagctaaggattc 284
>gb|BP829596.1|BP829596 BP829596 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-82-I24 5',
mRNA sequence
Length = 394
Score = 44.1 bits (22), Expect = 0.036
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 412 atgaaatttttgattgccgacactgccacaatgaaactaagaattc 457
|||| |||||||||||| |||| |||||||| ||| ||||| ||||
Sbjct: 285 atgagatttttgattgcagacattgccacaacgaagctaaggattc 330
>gb|BP841725.1|BP841725 BP841725 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-51-O18 5',
mRNA sequence
Length = 392
Score = 44.1 bits (22), Expect = 0.036
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 412 atgaaatttttgattgccgacactgccacaatgaaactaagaattc 457
|||| |||||||||||| |||| |||||||| ||| ||||| ||||
Sbjct: 274 atgagatttttgattgcagacattgccacaacgaagctaaggattc 319
>gb|BP849385.1|BP849385 BP849385 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-08-P11 5',
mRNA sequence
Length = 389
Score = 44.1 bits (22), Expect = 0.036
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 412 atgaaatttttgattgccgacactgccacaatgaaactaagaattc 457
|||| |||||||||||| |||| |||||||| ||| ||||| ||||
Sbjct: 279 atgagatttttgattgcagacattgccacaacgaagctaaggattc 324
>gb|BP849698.1|BP849698 BP849698 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-10-D21 5',
mRNA sequence
Length = 349
Score = 44.1 bits (22), Expect = 0.036
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 412 atgaaatttttgattgccgacactgccacaatgaaactaagaattc 457
|||| |||||||||||| |||| |||||||| ||| ||||| ||||
Sbjct: 274 atgagatttttgattgcagacattgccacaacgaagctaaggattc 319
>gb|BP854359.1|BP854359 BP854359 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-61-G08 5',
mRNA sequence
Length = 369
Score = 44.1 bits (22), Expect = 0.036
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 412 atgaaatttttgattgccgacactgccacaatgaaactaagaattc 457
|||| |||||||||||| |||| |||||||| ||| ||||| ||||
Sbjct: 287 atgagatttttgattgcagacattgccacaacgaagctaaggattc 332
>gb|BP860319.1|BP860319 BP860319 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-43-M01 5',
mRNA sequence
Length = 355
Score = 44.1 bits (22), Expect = 0.036
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 412 atgaaatttttgattgccgacactgccacaatgaaactaagaattc 457
|||| |||||||||||| |||| |||||||| ||| ||||| ||||
Sbjct: 274 atgagatttttgattgcagacattgccacaacgaagctaaggattc 319
>gb|BP865031.1|BP865031 BP865031 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-72-K13 5',
mRNA sequence
Length = 387
Score = 44.1 bits (22), Expect = 0.036
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 412 atgaaatttttgattgccgacactgccacaatgaaactaagaattc 457
|||| |||||||||||| |||| |||||||| ||| ||||| ||||
Sbjct: 276 atgagatttttgattgcagacattgccacaacgaagctaaggattc 321
>gb|BP869042.1|BP869042 BP869042 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-86-I01 5',
mRNA sequence
Length = 350
Score = 44.1 bits (22), Expect = 0.036
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 412 atgaaatttttgattgccgacactgccacaatgaaactaagaattc 457
|||| |||||||||||| |||| |||||||| ||| ||||| ||||
Sbjct: 266 atgagatttttgattgcagacattgccacaacgaagctaaggattc 311
>dbj|AB005243.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17
Length = 86065
Score = 42.1 bits (21), Expect = 0.14
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 364 ggtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttg 423
||||| ||||||||||||| ||||| || ||||| || || || |||| |||||||
Sbjct: 59799 ggtgttcacattatagaagacgatgcaagattagagcaccatgttgtgatgagatttttg 59858
Query: 424 attgccgacactgccacaatgaaactaag 452
||||| |||| |||||||| ||| |||||
Sbjct: 59859 attgcagacattgccacaacgaagctaag 59887
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 385,925
Number of Sequences: 1013581
Number of extensions: 385925
Number of successful extensions: 32870
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32419
Number of HSP's gapped (non-prelim): 432
length of query: 792
length of database: 908,940,872
effective HSP length: 20
effective length of query: 772
effective length of database: 888,669,252
effective search space: 686052662544
effective search space used: 686052662544
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)