BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198766.2.1
(1273 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BH242934.1|BH242934 AUITH94TF AUIT Arabidopsis thaliana ... 58 4e-006
emb|BX944901.1| Arabidopsis thaliana T-DNA flanking sequenc... 58 4e-006
gb|AV541937.1|AV541937 AV541937 Arabidopsis thaliana roots ... 58 4e-006
gb|CK120741.1|CK120741 206d06.p1 AtM1 Arabidopsis thaliana ... 58 4e-006
gb|BT004191.1| Arabidopsis thaliana clone RAFL15-38-P13 (R5... 58 4e-006
gb|AY084341.1| Arabidopsis thaliana clone 104915 mRNA, comp... 58 4e-006
gb|AC008261.5|ATAC008261 Arabidopsis thaliana chromosome II... 58 4e-006
gb|AC010676.6|ATAC010676 Arabidopsis thaliana chromosome II... 58 4e-006
emb|BX822786.1|CNS0A4UR Arabidopsis thaliana Full-length cD... 58 4e-006
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 58 4e-006
dbj|AK221131.1| Arabidopsis thaliana mRNA for pectate lyase... 58 4e-006
ref|NM_110993.2| Arabidopsis thaliana lyase/ pectate lyase ... 58 4e-006
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 58 4e-006
gb|BP839865.1|BP839865 BP839865 RAFL19 Arabidopsis thaliana... 50 0.001
gb|BP832471.1|BP832471 BP832471 RAFL19 Arabidopsis thaliana... 44 0.059
dbj|AB014459.1| Arabidopsis thaliana mRNA for obtusifoliol ... 44 0.059
gb|AF027174.1|AF027174 Arabidopsis thaliana cellulose synth... 42 0.23
gb|AF043351.1|AF043351 Arabidopsis thaliana adenosine-5'-ph... 42 0.23
gb|AF029262.1|AF029262 Arabidopsis thaliana putative cdc20 ... 42 0.23
gb|AF029263.1|AF029263 Arabidopsis thaliana putative cdc20 ... 42 0.23
dbj|BD022678.1| Manipulation of cellulose and/or beta-1,4-g... 42 0.23
emb|AX030946.1| Sequence 9 from Patent WO9800549 42 0.23
>gb|BH242934.1|BH242934 AUITH94TF AUIT Arabidopsis thaliana genomic clone AUITH94, DNA
sequence
Length = 705
Score = 58.0 bits (29), Expect = 4e-006
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 691 caaccacttcggcagaggcctcgtgcagaggatgccaaggtgccgctggggcttcttcca 750
|||||| ||||| | ||| || |||||||||||||| ||| ||| ||||| ||| ||||
Sbjct: 544 caaccatttcggaaaaggacttgtgcagaggatgcctagggtccgatggggtttcgtcca 485
Query: 751 cgtggtcaacaacgactacac 771
||| |||||||| ||||||||
Sbjct: 484 cgttgtcaacaatgactacac 464
>emb|BX944901.1| Arabidopsis thaliana T-DNA flanking sequence GK-703E09-025105,
genomic survey sequence
Length = 454
Score = 58.0 bits (29), Expect = 4e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 691 caaccacttcggcagaggcctcgtgcagaggatgccaaggtgccgctggggcttcttcca 750
|||||| ||||| | ||| || |||||||||||||| ||| ||| ||||| ||| ||||
Sbjct: 223 caaccatttcggaaaaggacttgtgcagaggatgcctagggtccgatggggtttcgtcca 282
Query: 751 cgtggtcaacaacgactacac 771
||| |||||||| ||||||||
Sbjct: 283 cgttgtcaacaatgactacac 303
>gb|AV541937.1|AV541937 AV541937 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ174b03F 3', mRNA sequence
Length = 569
Score = 58.0 bits (29), Expect = 4e-006
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 691 caaccacttcggcagaggcctcgtgcagaggatgccaaggtgccgctggggcttcttcca 750
|||||| ||||| | ||| || |||||||||||||| ||| ||| ||||| ||| ||||
Sbjct: 503 caaccatttcggaaaaggacttgtgcagaggatgcctagggtccgatggggtttcgtcca 444
Query: 751 cgtggtcaacaacgactacac 771
||| |||||||| ||||||||
Sbjct: 443 cgttgtcaacaatgactacac 423
>gb|CK120741.1|CK120741 206d06.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011D06206
5-PRIME, mRNA sequence
Length = 798
Score = 58.0 bits (29), Expect = 4e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 691 caaccacttcggcagaggcctcgtgcagaggatgccaaggtgccgctggggcttcttcca 750
|||||| ||||| | ||| || |||||||||||||| ||| ||| ||||| ||| ||||
Sbjct: 260 caaccatttcggaaaaggacttgtgcagaggatgcctagggtccgatggggtttcgtcca 319
Query: 751 cgtggtcaacaacgactacac 771
||| |||||||| ||||||||
Sbjct: 320 cgttgtcaacaatgactacac 340
>gb|BT004191.1| Arabidopsis thaliana clone RAFL15-38-P13 (R50134) At3g01270 mRNA,
complete sequence
Length = 1719
Score = 58.0 bits (29), Expect = 4e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 691 caaccacttcggcagaggcctcgtgcagaggatgccaaggtgccgctggggcttcttcca 750
|||||| ||||| | ||| || |||||||||||||| ||| ||| ||||| ||| ||||
Sbjct: 1194 caaccatttcggaaaaggacttgtgcagaggatgcctagggtccgatggggtttcgtcca 1253
Query: 751 cgtggtcaacaacgactacac 771
||| |||||||| ||||||||
Sbjct: 1254 cgttgtcaacaatgactacac 1274
>gb|AY084341.1| Arabidopsis thaliana clone 104915 mRNA, complete sequence
Length = 1812
Score = 58.0 bits (29), Expect = 4e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 691 caaccacttcggcagaggcctcgtgcagaggatgccaaggtgccgctggggcttcttcca 750
|||||| ||||| | ||| || |||||||||||||| ||| ||| ||||| ||| ||||
Sbjct: 1202 caaccatttcggaaaaggacttgtgcagaggatgcctagggtccgatggggtttcgtcca 1261
Query: 751 cgtggtcaacaacgactacac 771
||| |||||||| ||||||||
Sbjct: 1262 cgttgtcaacaatgactacac 1282
>gb|AC008261.5|ATAC008261 Arabidopsis thaliana chromosome III BAC T4P13 genomic sequence,
complete sequence
Length = 93735
Score = 58.0 bits (29), Expect = 4e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 691 caaccacttcggcagaggcctcgtgcagaggatgccaaggtgccgctggggcttcttcca 750
|||||| ||||| | ||| || |||||||||||||| ||| ||| ||||| ||| ||||
Sbjct: 13791 caaccatttcggaaaaggacttgtgcagaggatgcctagggtccgatggggtttcgtcca 13850
Query: 751 cgtggtcaacaacgactacac 771
||| |||||||| ||||||||
Sbjct: 13851 cgttgtcaacaatgactacac 13871
>gb|AC010676.6|ATAC010676 Arabidopsis thaliana chromosome III BAC T22N4 genomic sequence,
complete sequence
Length = 58448
Score = 58.0 bits (29), Expect = 4e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 691 caaccacttcggcagaggcctcgtgcagaggatgccaaggtgccgctggggcttcttcca 750
|||||| ||||| | ||| || |||||||||||||| ||| ||| ||||| ||| ||||
Sbjct: 55437 caaccatttcggaaaaggacttgtgcagaggatgcctagggtccgatggggtttcgtcca 55496
Query: 751 cgtggtcaacaacgactacac 771
||| |||||||| ||||||||
Sbjct: 55497 cgttgtcaacaatgactacac 55517
>emb|BX822786.1|CNS0A4UR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB64ZA09 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 879
Score = 58.0 bits (29), Expect = 4e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 691 caaccacttcggcagaggcctcgtgcagaggatgccaaggtgccgctggggcttcttcca 750
|||||| ||||| | ||| || |||||||||||||| ||| ||| ||||| ||| ||||
Sbjct: 279 caaccatttcggaaaaggacttgtgcagaggatgcctagggtccgatggggtttcgtcca 338
Query: 751 cgtggtcaacaacgactacac 771
||| |||||||| ||||||||
Sbjct: 339 cgttgtcaacaatgactacac 359
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 58.0 bits (29), Expect = 4e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 691 caaccacttcggcagaggcctcgtgcagaggatgccaaggtgccgctggggcttcttcca 750
|||||| ||||| | ||| || |||||||||||||| ||| ||| ||||| ||| ||||
Sbjct: 135806 caaccatttcggaaaaggacttgtgcagaggatgcctagggtccgatggggtttcgtcca 135865
Query: 751 cgtggtcaacaacgactacac 771
||| |||||||| ||||||||
Sbjct: 135866 cgttgtcaacaatgactacac 135886
Score = 58.0 bits (29), Expect = 4e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 691 caaccacttcggcagaggcctcgtgcagaggatgccaaggtgccgctggggcttcttcca 750
|||||| ||||| | ||| || |||||||||||||| ||| ||| ||||| ||| ||||
Sbjct: 17227 caaccatttcggaaaaggacttgtgcagaggatgcctagggtccgatggggtttcgtcca 17286
Query: 751 cgtggtcaacaacgactacac 771
||| |||||||| ||||||||
Sbjct: 17287 cgttgtcaacaatgactacac 17307
>dbj|AK221131.1| Arabidopsis thaliana mRNA for pectate lyase like protein, complete
cds, clone: RAFL22-92-L09
Length = 667
Score = 58.0 bits (29), Expect = 4e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 691 caaccacttcggcagaggcctcgtgcagaggatgccaaggtgccgctggggcttcttcca 750
|||||| ||||| | ||| || |||||||||||||| ||| ||| ||||| ||| ||||
Sbjct: 155 caaccatttcggaaaaggacttgtgcagaggatgcctagggtccgatggggtttcgtcca 214
Query: 751 cgtggtcaacaacgactacac 771
||| |||||||| ||||||||
Sbjct: 215 cgttgtcaacaatgactacac 235
>ref|NM_110993.2| Arabidopsis thaliana lyase/ pectate lyase AT3G01270 mRNA, complete
cds
Length = 1809
Score = 58.0 bits (29), Expect = 4e-006
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 691 caaccacttcggcagaggcctcgtgcagaggatgccaaggtgccgctggggcttcttcca 750
|||||| ||||| | ||| || |||||||||||||| ||| ||| ||||| ||| ||||
Sbjct: 1200 caaccatttcggaaaaggacttgtgcagaggatgcctagggtccgatggggtttcgtcca 1259
Query: 751 cgtggtcaacaacgactacac 771
||| |||||||| ||||||||
Sbjct: 1260 cgttgtcaacaatgactacac 1280
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 58.0 bits (29), Expect = 4e-006
Identities = 68/81 (83%)
Strand = Plus / Minus
Query: 691 caaccacttcggcagaggcctcgtgcagaggatgccaaggtgccgctggggcttcttcca 750
|||||| ||||| | ||| || |||||||||||||| ||| ||| ||||| ||| ||||
Sbjct: 83381 caaccatttcggaaaaggacttgtgcagaggatgcctagggtccgatggggtttcgtcca 83322
Query: 751 cgtggtcaacaacgactacac 771
||| |||||||| ||||||||
Sbjct: 83321 cgttgtcaacaatgactacac 83301
>gb|BP839865.1|BP839865 BP839865 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-28-G14 5',
mRNA sequence
Length = 410
Score = 50.1 bits (25), Expect = 0.001
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 691 caaccacttcggcagaggcctcgtgcagaggatgccaaggtgccgctggggcttcttcca 750
|||||| ||||| | ||| || |||||||||||||| ||| ||| ||||| ||| ||||
Sbjct: 154 caaccatttcggaaaaggacttgtgcagaggatgcctagggtccgatggggtttcgtcca 213
Query: 751 cgtggtcaacaacgactacac 771
|| |||||||| ||||||||
Sbjct: 214 ggttgtcaacaatgactacac 234
>gb|BP832471.1|BP832471 BP832471 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-92-L09 5',
mRNA sequence
Length = 359
Score = 44.1 bits (22), Expect = 0.059
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 691 caaccacttcggcagaggcctcgtgcagaggatgccaaggtgccgctggggcttcttcca 750
|||||| ||||| | ||| || |||||||||||||| ||| ||| ||||| ||| ||||
Sbjct: 154 caaccatttcggaaaaggacttgtgcagaggatgcctagggtccgatggggtttcgtcca 213
Query: 751 cgtggtcaac 760
||| ||||||
Sbjct: 214 cgttgtcaac 223
>dbj|AB014459.1| Arabidopsis thaliana mRNA for obtusifoliol 14-demethylase,
complete cds
Length = 1899
Score = 44.1 bits (22), Expect = 0.059
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ccgaattcgcggccgcgtcgac 22
||||||||||||||||||||||
Sbjct: 51 ccgaattcgcggccgcgtcgac 72
>gb|AF027174.1|AF027174 Arabidopsis thaliana cellulose synthase catalytic subunit (Ath-B)
mRNA, complete cds
Length = 3682
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 gaattcgcggccgcgtcgact 23
|||||||||||||||||||||
Sbjct: 40 gaattcgcggccgcgtcgact 60
>gb|AF043351.1|AF043351 Arabidopsis thaliana adenosine-5'-phosphosulfate-kinase (akn2) mRNA,
complete cds
Length = 1311
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 3 gaattcgcggccgcgtcgact 23
|||||||||||||||||||||
Sbjct: 1254 gaattcgcggccgcgtcgact 1234
>gb|AF029262.1|AF029262 Arabidopsis thaliana putative cdc20 protein (CDC20.1) mRNA,
complete cds
Length = 1848
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 gaattcgcggccgcgtcgact 23
|||||||||||||||||||||
Sbjct: 1 gaattcgcggccgcgtcgact 21
>gb|AF029263.1|AF029263 Arabidopsis thaliana putative cdc20 protein (CDC20.2) mRNA,
complete cds
Length = 1790
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 gaattcgcggccgcgtcgact 23
|||||||||||||||||||||
Sbjct: 1 gaattcgcggccgcgtcgact 21
>dbj|BD022678.1| Manipulation of cellulose and/or beta-1,4-glucan
Length = 3614
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 gaattcgcggccgcgtcgact 23
|||||||||||||||||||||
Sbjct: 1 gaattcgcggccgcgtcgact 21
>emb|AX030946.1| Sequence 9 from Patent WO9800549
Length = 3614
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 gaattcgcggccgcgtcgact 23
|||||||||||||||||||||
Sbjct: 1 gaattcgcggccgcgtcgact 21
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 383,608
Number of Sequences: 1013581
Number of extensions: 383608
Number of successful extensions: 27381
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27109
Number of HSP's gapped (non-prelim): 272
length of query: 1273
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1253
effective length of database: 888,669,252
effective search space: 1113502572756
effective search space used: 1113502572756
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)