BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191506.2.1
(1208 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV551519.1|AV551519 AV551519 Arabidopsis thaliana roots ... 131 3e-028
gb|AY039515.1| Arabidopsis thaliana AT3g61130/T20K12_30 mRN... 131 3e-028
gb|BT000630.1| Arabidopsis thaliana unknown protein (At3g6... 131 3e-028
emb|BX824243.1|CNS0A7GQ Arabidopsis thaliana Full-length cD... 131 3e-028
ref|NM_115977.2| Arabidopsis thaliana transferase, transfer... 131 3e-028
emb|AJ243015.1|ATH243015 Arabidopsis thaliana LGT1 gene, an... 113 7e-023
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 113 7e-023
emb|AL137898.1|ATT20K12 Arabidopsis thaliana DNA chromosome... 113 7e-023
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 113 7e-023
gb|BE529190.1|BE529190 M73F07STM Arabidopsis developing see... 105 2e-020
gb|AV552226.1|AV552226 AV552226 Arabidopsis thaliana roots ... 96 2e-017
ref|NM_130212.2| Arabidopsis thaliana transferase, transfer... 60 9e-007
gb|AC006418.4| Arabidopsis thaliana chromosome 2 clone F13A... 52 2e-004
gb|AC006526.8| Arabidopsis thaliana chromosome 2 clone F11C... 52 2e-004
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 52 2e-004
gb|BH213084.1|BH213084 SALK_008642 Arabidopsis thaliana TDN... 50 0.001
dbj|AB022214.1| Arabidopsis thaliana genomic DNA, chromosom... 50 0.001
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 50 0.001
gb|BT023729.1| Arabidopsis thaliana At5g54690 gene, complet... 50 0.001
ref|NM_124850.2| Arabidopsis thaliana transferase, transfer... 50 0.001
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 50 0.001
gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone poo... 48 0.004
emb|BX831422.1|CNS09ZHW Arabidopsis thaliana Full-length cD... 48 0.004
gb|R29906.1|R29906 12511 Lambda-PRL2 Arabidopsis thaliana c... 46 0.014
gb|AI994533.1|AI994533 701498530 A. thaliana, Ohio State cl... 46 0.014
gb|AY056202.1| Arabidopsis thaliana unknown protein (At5g47... 46 0.014
gb|AY091394.1| Arabidopsis thaliana unknown protein (At5g47... 46 0.014
emb|AX506425.1| Sequence 1120 from Patent WO0216655 46 0.014
emb|BX832170.1|CNS09ZMF Arabidopsis thaliana Full-length cD... 46 0.014
emb|BX826841.1|CNS0A2D1 Arabidopsis thaliana Full-length cD... 46 0.014
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 46 0.014
dbj|AB016886.1| Arabidopsis thaliana genomic DNA, chromosom... 46 0.014
emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome... 46 0.014
emb|AL035539.1|ATF22I13 Arabidopsis thaliana DNA chromosome... 46 0.014
emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosom... 46 0.014
ref|NM_124152.2| Arabidopsis thaliana transferase, transfer... 46 0.014
ref|NM_119989.3| Arabidopsis thaliana transferase, transfer... 46 0.014
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 46 0.014
gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseud... 42 0.22
>gb|AV551519.1|AV551519 AV551519 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ127g10R 5', mRNA sequence
Length = 520
Score = 131 bits (66), Expect = 3e-028
Identities = 366/466 (78%)
Strand = Plus / Plus
Query: 442 tgagagcaatgcttcagtcagcagatgagcaggtccggagcttgaagaagcagagcacct 501
||||||||||||||||| | || || || || || ||||||| ||||||||||| || |
Sbjct: 2 tgagagcaatgcttcagactgccgacgaacaagtgaggagcttaaagaagcagagtactt 61
Query: 502 tccttagccagctagcagctaagacaatcccaaatggcatccattgtctttccatgcgct 561
| || ||| ||||||| || || || |||||| |||||||| || || |||||||
Sbjct: 62 ttctggctcagttagcagcaaaaaccattccaaatcctatccattgcctatcaatgcgct 121
Query: 562 taacgattgattattatcttctctctccagagaaaagaaagttcccaaatagtgagaacc 621
| || || ||||| |||||||| ||||| ||||||||||| ||||| ||||| ||||
Sbjct: 122 tgactatcgattactatcttctgtctccggagaaaagaaaattccctcggagtgaaaacc 181
Query: 622 tggaaaatcctgatctttaccattatgctcttttctcggacaatgttttggcagcatcag 681
| ||||| ||| ||||||| |||||||| || || || |||||||| || || |||||||
Sbjct: 182 tagaaaaccctaatctttatcattatgccctcttttccgacaatgtattagctgcatcag 241
Query: 682 ttgtggtcaactcaaccatcatgaatgctaaggagcctgaaaaacatgtatttcatcttg 741
| || || |||||||||||||||||||| ||||| ||| || ||||| ||||| ||||
Sbjct: 242 tagttgttaactcaaccatcatgaatgccaaggatccttctaagcatgtttttcaccttg 301
Query: 742 ttactgacaaactgaactttggggccatgaacatgtggtttttgctgaatccacctgggg 801
| || || ||||| || || || || |||||||||||||| | || || ||||| ||
Sbjct: 302 tcacggataaactcaatttcggagcaatgaacatgtggttcctcctaaacccacccggaa 361
Query: 802 atgcaacaatccatgtggaaaatgttgatgacttcaaatggttaaactcttcttactgcc 861
| ||||| || ||||||||||| || ||||| || || ||| | || || |||||||| |
Sbjct: 362 aggcaaccatacatgtggaaaacgtcgatgagtttaagtggctcaattcatcttactgtc 421
Query: 862 ctgttctgaagcagcttgagtctgcagccatgaaagaatattattt 907
|||| || |||||||| |||||||| |||| ||| || |||||
Sbjct: 422 ctgtccttcgtcagcttgaatctgcagcaatgagagagtactattt 467
>gb|AY039515.1| Arabidopsis thaliana AT3g61130/T20K12_30 mRNA, complete cds
Length = 2542
Score = 131 bits (66), Expect = 3e-028
Identities = 366/466 (78%)
Strand = Plus / Plus
Query: 442 tgagagcaatgcttcagtcagcagatgagcaggtccggagcttgaagaagcagagcacct 501
||||||||||||||||| | || || || || || ||||||| ||||||||||| || |
Sbjct: 1218 tgagagcaatgcttcagactgccgacgaacaagtgaggagcttaaagaagcagagtactt 1277
Query: 502 tccttagccagctagcagctaagacaatcccaaatggcatccattgtctttccatgcgct 561
| || ||| ||||||| || || || |||||| |||||||| || || |||||||
Sbjct: 1278 ttctggctcagttagcagcaaaaaccattccaaatcctatccattgcctatcaatgcgct 1337
Query: 562 taacgattgattattatcttctctctccagagaaaagaaagttcccaaatagtgagaacc 621
| || || ||||| |||||||| ||||| ||||||||||| ||||| ||||| ||||
Sbjct: 1338 tgactatcgattactatcttctgtctccggagaaaagaaaattccctcggagtgaaaacc 1397
Query: 622 tggaaaatcctgatctttaccattatgctcttttctcggacaatgttttggcagcatcag 681
| ||||| ||| ||||||| |||||||| || || || |||||||| || || |||||||
Sbjct: 1398 tagaaaaccctaatctttatcattatgccctcttttccgacaatgtattagctgcatcag 1457
Query: 682 ttgtggtcaactcaaccatcatgaatgctaaggagcctgaaaaacatgtatttcatcttg 741
| || || |||||||||||||||||||| ||||| ||| || ||||| ||||| ||||
Sbjct: 1458 tagttgttaactcaaccatcatgaatgccaaggatccttctaagcatgtttttcaccttg 1517
Query: 742 ttactgacaaactgaactttggggccatgaacatgtggtttttgctgaatccacctgggg 801
| || || ||||| || || || || |||||||||||||| | || || ||||| ||
Sbjct: 1518 tcacggataaactcaatttcggagcaatgaacatgtggttcctcctaaacccacccggaa 1577
Query: 802 atgcaacaatccatgtggaaaatgttgatgacttcaaatggttaaactcttcttactgcc 861
| ||||| || ||||||||||| || ||||| || || ||| | || || |||||||| |
Sbjct: 1578 aggcaaccatacatgtggaaaacgtcgatgagtttaagtggctcaattcatcttactgtc 1637
Query: 862 ctgttctgaagcagcttgagtctgcagccatgaaagaatattattt 907
|||| || |||||||| |||||||| |||| ||| || |||||
Sbjct: 1638 ctgtccttcgtcagcttgaatctgcagcaatgagagagtactattt 1683
Score = 52.0 bits (26), Expect = 2e-004
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 961 gaaacccaaaatatttgtccatgctcaatcatctaagattttacctcccacaagtctatc 1020
|||||||||| ||| | |||||| | ||||| | ||||| |||||||| | || ||||
Sbjct: 1728 gaaacccaaagtatctatccatgttgaatcacttgagattctacctccctgaggtttatc 1787
Query: 1021 ccaagctgaataaaattcttttcctggatgatga 1054
|||||||||| ||||| || |||||||| |||||
Sbjct: 1788 ccaagctgaacaaaatcctcttcctggacgatga 1821
>gb|BT000630.1| Arabidopsis thaliana unknown protein (At3g61130/T20K12_30) mRNA,
complete cds
Length = 1920
Score = 131 bits (66), Expect = 3e-028
Identities = 366/466 (78%)
Strand = Plus / Plus
Query: 442 tgagagcaatgcttcagtcagcagatgagcaggtccggagcttgaagaagcagagcacct 501
||||||||||||||||| | || || || || || ||||||| ||||||||||| || |
Sbjct: 896 tgagagcaatgcttcagactgccgacgaacaagtgaggagcttaaagaagcagagtactt 955
Query: 502 tccttagccagctagcagctaagacaatcccaaatggcatccattgtctttccatgcgct 561
| || ||| ||||||| || || || |||||| |||||||| || || |||||||
Sbjct: 956 ttctggctcagttagcagcaaaaaccattccaaatcctatccattgcctatcaatgcgct 1015
Query: 562 taacgattgattattatcttctctctccagagaaaagaaagttcccaaatagtgagaacc 621
| || || ||||| |||||||| ||||| ||||||||||| ||||| ||||| ||||
Sbjct: 1016 tgactatcgattactatcttctgtctccggagaaaagaaaattccctcggagtgaaaacc 1075
Query: 622 tggaaaatcctgatctttaccattatgctcttttctcggacaatgttttggcagcatcag 681
| ||||| ||| ||||||| |||||||| || || || |||||||| || || |||||||
Sbjct: 1076 tagaaaaccctaatctttatcattatgccctcttttccgacaatgtattagctgcatcag 1135
Query: 682 ttgtggtcaactcaaccatcatgaatgctaaggagcctgaaaaacatgtatttcatcttg 741
| || || |||||||||||||||||||| ||||| ||| || ||||| ||||| ||||
Sbjct: 1136 tagttgttaactcaaccatcatgaatgccaaggatccttctaagcatgtttttcaccttg 1195
Query: 742 ttactgacaaactgaactttggggccatgaacatgtggtttttgctgaatccacctgggg 801
| || || ||||| || || || || |||||||||||||| | || || ||||| ||
Sbjct: 1196 tcacggataaactcaatttcggagcaatgaacatgtggttcctcctaaacccacccggaa 1255
Query: 802 atgcaacaatccatgtggaaaatgttgatgacttcaaatggttaaactcttcttactgcc 861
| ||||| || ||||||||||| || ||||| || || ||| | || || |||||||| |
Sbjct: 1256 aggcaaccatacatgtggaaaacgtcgatgagtttaagtggctcaattcatcttactgtc 1315
Query: 862 ctgttctgaagcagcttgagtctgcagccatgaaagaatattattt 907
|||| || |||||||| |||||||| |||| ||| || |||||
Sbjct: 1316 ctgtccttcgtcagcttgaatctgcagcaatgagagagtactattt 1361
Score = 52.0 bits (26), Expect = 2e-004
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 961 gaaacccaaaatatttgtccatgctcaatcatctaagattttacctcccacaagtctatc 1020
|||||||||| ||| | |||||| | ||||| | ||||| |||||||| | || ||||
Sbjct: 1406 gaaacccaaagtatctatccatgttgaatcacttgagattctacctccctgaggtttatc 1465
Query: 1021 ccaagctgaataaaattcttttcctggatgatga 1054
|||||||||| ||||| || |||||||| |||||
Sbjct: 1466 ccaagctgaacaaaatcctcttcctggacgatga 1499
>emb|BX824243.1|CNS0A7GQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH32ZE03 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2452
Score = 131 bits (66), Expect = 3e-028
Identities = 366/466 (78%)
Strand = Plus / Plus
Query: 442 tgagagcaatgcttcagtcagcagatgagcaggtccggagcttgaagaagcagagcacct 501
||||||||||||||||| | || || || || || ||||||| ||||||||||| || |
Sbjct: 1169 tgagagcaatgcttcagactgccgacgaacaagtgaggagcttaaagaagcagagtactt 1228
Query: 502 tccttagccagctagcagctaagacaatcccaaatggcatccattgtctttccatgcgct 561
| || ||| ||||||| || || || |||||| |||||||| || || |||||||
Sbjct: 1229 ttctggctcagttagcagcaaaaaccattccaaatcctatccattgcctatcaatgcgct 1288
Query: 562 taacgattgattattatcttctctctccagagaaaagaaagttcccaaatagtgagaacc 621
| || || ||||| |||||||| ||||| ||||||||||| ||||| ||||| ||||
Sbjct: 1289 tgactatcgattactatcttctgtctccggagaaaagaaaattccctcggagtgaaaacc 1348
Query: 622 tggaaaatcctgatctttaccattatgctcttttctcggacaatgttttggcagcatcag 681
| ||||| ||| ||||||| |||||||| || || || |||||||| || || |||||||
Sbjct: 1349 tagaaaaccctaatctttatcattatgccctcttttccgacaatgtattagctgcatcag 1408
Query: 682 ttgtggtcaactcaaccatcatgaatgctaaggagcctgaaaaacatgtatttcatcttg 741
| || || |||||||||||||||||||| ||||| ||| || ||||| ||||| ||||
Sbjct: 1409 tagttgttaactcaaccatcatgaatgccaaggatccttctaagcatgtttttcaccttg 1468
Query: 742 ttactgacaaactgaactttggggccatgaacatgtggtttttgctgaatccacctgggg 801
| || || ||||| || || || || |||||||||||||| | || || ||||| ||
Sbjct: 1469 tcacggataaactcaatttcggagcaatgaacatgtggttcctcctaaacccacccggaa 1528
Query: 802 atgcaacaatccatgtggaaaatgttgatgacttcaaatggttaaactcttcttactgcc 861
| ||||| || ||||||||||| || ||||| || || ||| | || || |||||||| |
Sbjct: 1529 aggcaaccatacatgtggaaaacgtcgatgagtttaagtggctcaattcatcttactgtc 1588
Query: 862 ctgttctgaagcagcttgagtctgcagccatgaaagaatattattt 907
|||| || |||||||| |||||||| |||| ||| || |||||
Sbjct: 1589 ctgtccttcgtcagcttgaatctgcagcaatgagagagtactattt 1634
Score = 52.0 bits (26), Expect = 2e-004
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 961 gaaacccaaaatatttgtccatgctcaatcatctaagattttacctcccacaagtctatc 1020
|||||||||| ||| | |||||| | ||||| | ||||| |||||||| | || ||||
Sbjct: 1679 gaaacccaaagtatctatccatgttgaatcacttgagattctacctccctgaggtttatc 1738
Query: 1021 ccaagctgaataaaattcttttcctggatgatga 1054
|||||||||| ||||| || |||||||| |||||
Sbjct: 1739 ccaagctgaacaaaatcctcttcctggacgatga 1772
>ref|NM_115977.2| Arabidopsis thaliana transferase, transferring glycosyl groups
AT3G61130 mRNA, complete cds
Length = 2546
Score = 131 bits (66), Expect = 3e-028
Identities = 366/466 (78%)
Strand = Plus / Plus
Query: 442 tgagagcaatgcttcagtcagcagatgagcaggtccggagcttgaagaagcagagcacct 501
||||||||||||||||| | || || || || || ||||||| ||||||||||| || |
Sbjct: 1218 tgagagcaatgcttcagactgccgacgaacaagtgaggagcttaaagaagcagagtactt 1277
Query: 502 tccttagccagctagcagctaagacaatcccaaatggcatccattgtctttccatgcgct 561
| || ||| ||||||| || || || |||||| |||||||| || || |||||||
Sbjct: 1278 ttctggctcagttagcagcaaaaaccattccaaatcctatccattgcctatcaatgcgct 1337
Query: 562 taacgattgattattatcttctctctccagagaaaagaaagttcccaaatagtgagaacc 621
| || || ||||| |||||||| ||||| ||||||||||| ||||| ||||| ||||
Sbjct: 1338 tgactatcgattactatcttctgtctccggagaaaagaaaattccctcggagtgaaaacc 1397
Query: 622 tggaaaatcctgatctttaccattatgctcttttctcggacaatgttttggcagcatcag 681
| ||||| ||| ||||||| |||||||| || || || |||||||| || || |||||||
Sbjct: 1398 tagaaaaccctaatctttatcattatgccctcttttccgacaatgtattagctgcatcag 1457
Query: 682 ttgtggtcaactcaaccatcatgaatgctaaggagcctgaaaaacatgtatttcatcttg 741
| || || |||||||||||||||||||| ||||| ||| || ||||| ||||| ||||
Sbjct: 1458 tagttgttaactcaaccatcatgaatgccaaggatccttctaagcatgtttttcaccttg 1517
Query: 742 ttactgacaaactgaactttggggccatgaacatgtggtttttgctgaatccacctgggg 801
| || || ||||| || || || || |||||||||||||| | || || ||||| ||
Sbjct: 1518 tcacggataaactcaatttcggagcaatgaacatgtggttcctcctaaacccacccggaa 1577
Query: 802 atgcaacaatccatgtggaaaatgttgatgacttcaaatggttaaactcttcttactgcc 861
| ||||| || ||||||||||| || ||||| || || ||| | || || |||||||| |
Sbjct: 1578 aggcaaccatacatgtggaaaacgtcgatgagtttaagtggctcaattcatcttactgtc 1637
Query: 862 ctgttctgaagcagcttgagtctgcagccatgaaagaatattattt 907
|||| || |||||||| |||||||| |||| ||| || |||||
Sbjct: 1638 ctgtccttcgtcagcttgaatctgcagcaatgagagagtactattt 1683
Score = 52.0 bits (26), Expect = 2e-004
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 961 gaaacccaaaatatttgtccatgctcaatcatctaagattttacctcccacaagtctatc 1020
|||||||||| ||| | |||||| | ||||| | ||||| |||||||| | || ||||
Sbjct: 1728 gaaacccaaagtatctatccatgttgaatcacttgagattctacctccctgaggtttatc 1787
Query: 1021 ccaagctgaataaaattcttttcctggatgatga 1054
|||||||||| ||||| || |||||||| |||||
Sbjct: 1788 ccaagctgaacaaaatcctcttcctggacgatga 1821
>emb|AJ243015.1|ATH243015 Arabidopsis thaliana LGT1 gene, and partial FUSCA6 gene
Length = 5000
Score = 113 bits (57), Expect = 7e-023
Identities = 219/273 (80%)
Strand = Plus / Plus
Query: 442 tgagagcaatgcttcagtcagcagatgagcaggtccggagcttgaagaagcagagcacct 501
||||||||||||||||| | || || || || || ||||||| ||||||||||| || |
Sbjct: 2414 tgagagcaatgcttcagactgccgacgaacaagtgaggagcttaaagaagcagagtactt 2473
Query: 502 tccttagccagctagcagctaagacaatcccaaatggcatccattgtctttccatgcgct 561
| || ||| ||||||| || || || |||||| |||||||| || || |||||||
Sbjct: 2474 ttctggctcagttagcagcaaaaaccattccaaatcctatccattgcctatcaatgcgct 2533
Query: 562 taacgattgattattatcttctctctccagagaaaagaaagttcccaaatagtgagaacc 621
| || || ||||| |||||||| ||||| ||||||||||| ||||| ||||| ||||
Sbjct: 2534 tgactatcgattactatcttctgtctccggagaaaagaaaattccctcggagtgaaaacc 2593
Query: 622 tggaaaatcctgatctttaccattatgctcttttctcggacaatgttttggcagcatcag 681
| ||||| ||| ||||||| |||||||| || || || |||||||| || || |||||||
Sbjct: 2594 tagaaaaccctaatctttatcattatgccctcttttccgacaatgtattagctgcatcag 2653
Query: 682 ttgtggtcaactcaaccatcatgaatgctaagg 714
| || || |||||||||||||||||||| ||||
Sbjct: 2654 tagttgttaactcaaccatcatgaatgccaagg 2686
Score = 52.0 bits (26), Expect = 2e-004
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 961 gaaacccaaaatatttgtccatgctcaatcatctaagattttacctcccacaagtctatc 1020
|||||||||| ||| | |||||| | ||||| | ||||| |||||||| | || ||||
Sbjct: 3034 gaaacccaaagtatctatccatgttgaatcacttgagattctacctccctgaggtttatc 3093
Query: 1021 ccaagctgaataaaattcttttcctggatgatga 1054
|||||||||| ||||| || |||||||| |||||
Sbjct: 3094 ccaagctgaacaaaatcctcttcctggacgatga 3127
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 113 bits (57), Expect = 7e-023
Identities = 219/273 (80%)
Strand = Plus / Plus
Query: 442 tgagagcaatgcttcagtcagcagatgagcaggtccggagcttgaagaagcagagcacct 501
||||||||||||||||| | || || || || || ||||||| ||||||||||| || |
Sbjct: 22582458 tgagagcaatgcttcagactgccgacgaacaagtgaggagcttaaagaagcagagtactt 22582517
Query: 502 tccttagccagctagcagctaagacaatcccaaatggcatccattgtctttccatgcgct 561
| || ||| ||||||| || || || |||||| |||||||| || || |||||||
Sbjct: 22582518 ttctggctcagttagcagcaaaaaccattccaaatcctatccattgcctatcaatgcgct 22582577
Query: 562 taacgattgattattatcttctctctccagagaaaagaaagttcccaaatagtgagaacc 621
| || || ||||| |||||||| ||||| ||||||||||| ||||| ||||| ||||
Sbjct: 22582578 tgactatcgattactatcttctgtctccggagaaaagaaaattccctcggagtgaaaacc 22582637
Query: 622 tggaaaatcctgatctttaccattatgctcttttctcggacaatgttttggcagcatcag 681
| ||||| ||| ||||||| |||||||| || || || |||||||| || || |||||||
Sbjct: 22582638 tagaaaaccctaatctttatcattatgccctcttttccgacaatgtattagctgcatcag 22582697
Query: 682 ttgtggtcaactcaaccatcatgaatgctaagg 714
| || || |||||||||||||||||||| ||||
Sbjct: 22582698 tagttgttaactcaaccatcatgaatgccaagg 22582730
Score = 52.0 bits (26), Expect = 2e-004
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 961 gaaacccaaaatatttgtccatgctcaatcatctaagattttacctcccacaagtctatc 1020
|||||||||| ||| | |||||| | ||||| | ||||| |||||||| | || ||||
Sbjct: 22583078 gaaacccaaagtatctatccatgttgaatcacttgagattctacctccctgaggtttatc 22583137
Query: 1021 ccaagctgaataaaattcttttcctggatgatga 1054
|||||||||| ||||| || |||||||| |||||
Sbjct: 22583138 ccaagctgaacaaaatcctcttcctggacgatga 22583171
>emb|AL137898.1|ATT20K12 Arabidopsis thaliana DNA chromosome 3, BAC clone T20K12
Length = 109155
Score = 113 bits (57), Expect = 7e-023
Identities = 219/273 (80%)
Strand = Plus / Plus
Query: 442 tgagagcaatgcttcagtcagcagatgagcaggtccggagcttgaagaagcagagcacct 501
||||||||||||||||| | || || || || || ||||||| ||||||||||| || |
Sbjct: 12319 tgagagcaatgcttcagactgccgacgaacaagtgaggagcttaaagaagcagagtactt 12378
Query: 502 tccttagccagctagcagctaagacaatcccaaatggcatccattgtctttccatgcgct 561
| || ||| ||||||| || || || |||||| |||||||| || || |||||||
Sbjct: 12379 ttctggctcagttagcagcaaaaaccattccaaatcctatccattgcctatcaatgcgct 12438
Query: 562 taacgattgattattatcttctctctccagagaaaagaaagttcccaaatagtgagaacc 621
| || || ||||| |||||||| ||||| ||||||||||| ||||| ||||| ||||
Sbjct: 12439 tgactatcgattactatcttctgtctccggagaaaagaaaattccctcggagtgaaaacc 12498
Query: 622 tggaaaatcctgatctttaccattatgctcttttctcggacaatgttttggcagcatcag 681
| ||||| ||| ||||||| |||||||| || || || |||||||| || || |||||||
Sbjct: 12499 tagaaaaccctaatctttatcattatgccctcttttccgacaatgtattagctgcatcag 12558
Query: 682 ttgtggtcaactcaaccatcatgaatgctaagg 714
| || || |||||||||||||||||||| ||||
Sbjct: 12559 tagttgttaactcaaccatcatgaatgccaagg 12591
Score = 52.0 bits (26), Expect = 2e-004
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 961 gaaacccaaaatatttgtccatgctcaatcatctaagattttacctcccacaagtctatc 1020
|||||||||| ||| | |||||| | ||||| | ||||| |||||||| | || ||||
Sbjct: 12939 gaaacccaaagtatctatccatgttgaatcacttgagattctacctccctgaggtttatc 12998
Query: 1021 ccaagctgaataaaattcttttcctggatgatga 1054
|||||||||| ||||| || |||||||| |||||
Sbjct: 12999 ccaagctgaacaaaatcctcttcctggacgatga 13032
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 113 bits (57), Expect = 7e-023
Identities = 219/273 (80%)
Strand = Plus / Plus
Query: 442 tgagagcaatgcttcagtcagcagatgagcaggtccggagcttgaagaagcagagcacct 501
||||||||||||||||| | || || || || || ||||||| ||||||||||| || |
Sbjct: 22635159 tgagagcaatgcttcagactgccgacgaacaagtgaggagcttaaagaagcagagtactt 22635218
Query: 502 tccttagccagctagcagctaagacaatcccaaatggcatccattgtctttccatgcgct 561
| || ||| ||||||| || || || |||||| |||||||| || || |||||||
Sbjct: 22635219 ttctggctcagttagcagcaaaaaccattccaaatcctatccattgcctatcaatgcgct 22635278
Query: 562 taacgattgattattatcttctctctccagagaaaagaaagttcccaaatagtgagaacc 621
| || || ||||| |||||||| ||||| ||||||||||| ||||| ||||| ||||
Sbjct: 22635279 tgactatcgattactatcttctgtctccggagaaaagaaaattccctcggagtgaaaacc 22635338
Query: 622 tggaaaatcctgatctttaccattatgctcttttctcggacaatgttttggcagcatcag 681
| ||||| ||| ||||||| |||||||| || || || |||||||| || || |||||||
Sbjct: 22635339 tagaaaaccctaatctttatcattatgccctcttttccgacaatgtattagctgcatcag 22635398
Query: 682 ttgtggtcaactcaaccatcatgaatgctaagg 714
| || || |||||||||||||||||||| ||||
Sbjct: 22635399 tagttgttaactcaaccatcatgaatgccaagg 22635431
Score = 52.0 bits (26), Expect = 2e-004
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 961 gaaacccaaaatatttgtccatgctcaatcatctaagattttacctcccacaagtctatc 1020
|||||||||| ||| | |||||| | ||||| | ||||| |||||||| | || ||||
Sbjct: 22635779 gaaacccaaagtatctatccatgttgaatcacttgagattctacctccctgaggtttatc 22635838
Query: 1021 ccaagctgaataaaattcttttcctggatgatga 1054
|||||||||| ||||| || |||||||| |||||
Sbjct: 22635839 ccaagctgaacaaaatcctcttcctggacgatga 22635872
>gb|BE529190.1|BE529190 M73F07STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600038427R1 5', mRNA sequence
Length = 262
Score = 105 bits (53), Expect = 2e-020
Identities = 145/176 (82%)
Strand = Plus / Plus
Query: 540 atccattgtctttccatgcgcttaacgattgattattatcttctctctccagagaaaaga 599
|||||||| || || |||||||| || || ||||| |||||||| ||||| |||||||||
Sbjct: 34 atccattgcctatcaatgcgcttgactatcgattactatcttctgtctccggagaaaaga 93
Query: 600 aagttcccaaatagtgagaacctggaaaatcctgatctttaccattatgctcttttctcg 659
| ||||| ||||| ||||| ||||| ||| ||||||| |||||||| || || ||
Sbjct: 94 naattccctcggagtgaaaacctagaaaaccctaatctttatcattatgccctcttttcc 153
Query: 660 gacaatgttttggcagcatcagttgtggtcaactcaaccatcatgaatgctaagga 715
|||||||| || || |||||||| || || |||||||||||||||||||| |||||
Sbjct: 154 gacaatgtattagctgcatcagtagttgttaactcaaccatcatgaatgccaagga 209
>gb|AV552226.1|AV552226 AV552226 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ24c05R 5', mRNA sequence
Length = 566
Score = 95.6 bits (48), Expect = 2e-017
Identities = 234/296 (79%)
Strand = Plus / Plus
Query: 612 agtgagaacctggaaaatcctgatctttaccattatgctcttttctcggacaatgttttg 671
||||| ||||| ||||| ||| ||||||| |||||||| || || || |||||||| ||
Sbjct: 13 agtgaaaacctagaaaaccctaatctttatcattatgccctcttttccgacaatgtatta 72
Query: 672 gcagcatcagttgtggtcaactcaaccatcatgaatgctaaggagcctgaaaaacatgta 731
|| |||||||| || || |||||||||||||||||||| ||||| ||| || |||||
Sbjct: 73 gctgcatcagtagttgttaactcaaccatcatgaatgccaaggatccttctaagcatgtt 132
Query: 732 tttcatcttgttactgacaaactgaactttggggccatgaacatgtggtttttgctgaat 791
||||| ||||| || || ||||| || || || || |||||||||||||| | || ||
Sbjct: 133 tttcaccttgtcacggataaactcaatttcggagcaatgaacatgtggttcctcctaaac 192
Query: 792 ccacctggggatgcaacaatccatgtggaaaatgttgatgacttcaaatggttaaactct 851
||||| || | ||||| || ||||||||||| || ||||| || || ||| | || ||
Sbjct: 193 ccacccggaaaggcaaccatacatgtggaaaacgtcgatgagtttaagtggctcaattca 252
Query: 852 tcttactgccctgttctgaagcagcttgagtctgcagccatgaaagaatattattt 907
|||||||| ||||| || |||||||| |||||||| |||| ||| || |||||
Sbjct: 253 tcttactgtcctgtccttcgtcagcttgaatctgcagcaatgagagagtactattt 308
Score = 52.0 bits (26), Expect = 2e-004
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 961 gaaacccaaaatatttgtccatgctcaatcatctaagattttacctcccacaagtctatc 1020
|||||||||| ||| | |||||| | ||||| | ||||| |||||||| | || ||||
Sbjct: 353 gaaacccaaagtatctatccatgttgaatcacttgagattctacctccctgaggtttatc 412
Query: 1021 ccaagctgaataaaattcttttcctggatgatga 1054
|||||||||| ||||| || |||||||| |||||
Sbjct: 413 ccaagctgaacaaaatcctcttcctggacgatga 446
>ref|NM_130212.2| Arabidopsis thaliana transferase, transferring glycosyl groups
AT2G46480 mRNA, complete cds
Length = 1587
Score = 60.0 bits (30), Expect = 9e-007
Identities = 144/182 (79%)
Strand = Plus / Plus
Query: 636 ctttaccattatgctcttttctcggacaatgttttggcagcatcagttgtggtcaactca 695
|||||||| || ||||| ||||| || ||||| |||| ||||||||||| ||||||||
Sbjct: 721 ctttaccactacgctctcttctctgataatgtactggctgcatcagttgttgtcaactcc 780
Query: 696 accatcatgaatgctaaggagcctgaaaaacatgtatttcatcttgttactgacaaactg 755
|| |||||||||| |||| ||| || ||||| || || ||||| ||||| || ||
Sbjct: 781 acagtcatgaatgcacaggatccttcaaggcatgttttccaccttgtgactgataagctc 840
Query: 756 aactttggggccatgaacatgtggtttttgctgaatccacctggggatgcaacaatccat 815
|||||||| || |||| ||||||||| || |||| || ||||| || || || ||||||
Sbjct: 841 aactttggagcaatgagtatgtggtttctgttgaaccctcctggagaagcgaccatccat 900
Query: 816 gt 817
||
Sbjct: 901 gt 902
>gb|AC006418.4| Arabidopsis thaliana chromosome 2 clone F13A10 map CIC06C03, complete
sequence
Length = 84825
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 636 ctttaccattatgctcttttctcggacaatgttttggcagcatcagttgtggtcaactca 695
|||||||| || ||||| ||||| || ||||| |||| ||||||||||| ||||||||
Sbjct: 2151 ctttaccactacgctctcttctctgataatgtactggctgcatcagttgttgtcaactcc 2092
Query: 696 accatcatgaatgc 709
|| ||||||||||
Sbjct: 2091 acagtcatgaatgc 2078
>gb|AC006526.8| Arabidopsis thaliana chromosome 2 clone F11C10 map CIC02E07, complete
sequence
Length = 95214
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 636 ctttaccattatgctcttttctcggacaatgttttggcagcatcagttgtggtcaactca 695
|||||||| || ||||| ||||| || ||||| |||| ||||||||||| ||||||||
Sbjct: 61213 ctttaccactacgctctcttctctgataatgtactggctgcatcagttgttgtcaactcc 61154
Query: 696 accatcatgaatgc 709
|| ||||||||||
Sbjct: 61153 acagtcatgaatgc 61140
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 636 ctttaccattatgctcttttctcggacaatgttttggcagcatcagttgtggtcaactca 695
|||||||| || ||||| ||||| || ||||| |||| ||||||||||| ||||||||
Sbjct: 19084580 ctttaccactacgctctcttctctgataatgtactggctgcatcagttgttgtcaactcc 19084521
Query: 696 accatcatgaatgc 709
|| ||||||||||
Sbjct: 19084520 acagtcatgaatgc 19084507
>gb|BH213084.1|BH213084 SALK_008642 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_008642, DNA sequence
Length = 435
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1101 aatggaaatgtaaatggagccgtggaaacatgt 1133
|||||||| ||||||||||| ||||||||||||
Sbjct: 291 aatggaaaagtaaatggagcagtggaaacatgt 259
>dbj|AB022214.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K5F14
Length = 31178
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1101 aatggaaatgtaaatggagccgtggaaacatgt 1133
|||||||| ||||||||||| ||||||||||||
Sbjct: 10201 aatggaaaagtaaatggagcagtggaaacatgt 10169
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1101 aatggaaatgtaaatggagccgtggaaacatgt 1133
|||||||| ||||||||||| ||||||||||||
Sbjct: 19861417 aatggaaaagtaaatggagcagtggaaacatgt 19861385
Score = 46.1 bits (23), Expect = 0.014
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1045 tggatgatgatatagttgtccagagggacct 1075
||||||||||||||||||| |||| ||||||
Sbjct: 17490022 tggatgatgatatagttgtgcagaaggacct 17490052
>gb|BT023729.1| Arabidopsis thaliana At5g54690 gene, complete cds
Length = 1856
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1101 aatggaaatgtaaatggagccgtggaaacatgt 1133
|||||||| ||||||||||| ||||||||||||
Sbjct: 1174 aatggaaaagtaaatggagcagtggaaacatgt 1206
>ref|NM_124850.2| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT5G54690 mRNA,
complete cds
Length = 1679
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1101 aatggaaatgtaaatggagccgtggaaacatgt 1133
|||||||| ||||||||||| ||||||||||||
Sbjct: 1179 aatggaaaagtaaatggagcagtggaaacatgt 1211
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1101 aatggaaatgtaaatggagccgtggaaacatgt 1133
|||||||| ||||||||||| ||||||||||||
Sbjct: 22237246 aatggaaaagtaaatggagcagtggaaacatgt 22237214
Score = 46.1 bits (23), Expect = 0.014
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1045 tggatgatgatatagttgtccagagggacct 1075
||||||||||||||||||| |||| ||||||
Sbjct: 19367121 tggatgatgatatagttgtgcagaaggacct 19367151
>gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH10 similar to putative protein, mRNA
sequence
Length = 305
Score = 48.1 bits (24), Expect = 0.004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1185 ccgcgtacctgcccgggcggccgc 1208
||||||||||||||||||||||||
Sbjct: 274 ccgcgtacctgcccgggcggccgc 297
>emb|BX831422.1|CNS09ZHW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS88ZH04 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1933
Score = 48.1 bits (24), Expect = 0.004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 645 tatgctcttttctcggacaatgttttggcagcatcagttgtggtcaactcaaccat 700
||||| |||||||| || |||||||||||| | |||||||| || ||||| |||||
Sbjct: 938 tatgcccttttctctgataatgttttggcaacgtcagttgttgttaactctaccat 993
Score = 42.1 bits (21), Expect = 0.22
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1047 gatgatgatatagttgtccagagggacct 1075
||||||||||||||||| |||| ||||||
Sbjct: 1328 gatgatgatatagttgtgcagaaggacct 1356
>gb|R29906.1|R29906 12511 Lambda-PRL2 Arabidopsis thaliana cDNA clone 162K19T7, mRNA
sequence
Length = 541
Score = 46.1 bits (23), Expect = 0.014
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1045 tggatgatgatatagttgtccagagggacct 1075
||||||||||||||||||| |||| ||||||
Sbjct: 269 tggatgatgatatagttgtgcagaaggacct 299
>gb|AI994533.1|AI994533 701498530 A. thaliana, Ohio State clone set Arabidopsis thaliana cDNA
clone 701498530, mRNA sequence
Length = 545
Score = 46.1 bits (23), Expect = 0.014
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1045 tggatgatgatatagttgtccagagggacct 1075
||||||||||||||||||| |||| ||||||
Sbjct: 269 tggatgatgatatagttgtgcagaaggacct 299
>gb|AY056202.1| Arabidopsis thaliana unknown protein (At5g47780) mRNA, complete cds
Length = 2084
Score = 46.1 bits (23), Expect = 0.014
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1045 tggatgatgatatagttgtccagagggacct 1075
||||||||||||||||||| |||| ||||||
Sbjct: 1384 tggatgatgatatagttgtgcagaaggacct 1414
>gb|AY091394.1| Arabidopsis thaliana unknown protein (At5g47780) mRNA, complete cds
Length = 1882
Score = 46.1 bits (23), Expect = 0.014
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1045 tggatgatgatatagttgtccagagggacct 1075
||||||||||||||||||| |||| ||||||
Sbjct: 1319 tggatgatgatatagttgtgcagaaggacct 1349
>emb|AX506425.1| Sequence 1120 from Patent WO0216655
Length = 1977
Score = 46.1 bits (23), Expect = 0.014
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 744 actgacaaactgaactttggggccatgaacatgtggttt 782
|||||||||||||| ||||| || ||||| |||||||||
Sbjct: 1144 actgacaaactgaattttggtgcaatgaagatgtggttt 1182
>emb|BX832170.1|CNS09ZMF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH56ZC06 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1922
Score = 46.1 bits (23), Expect = 0.014
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1045 tggatgatgatatagttgtccagagggacct 1075
||||||||||||||||||| |||| ||||||
Sbjct: 1371 tggatgatgatatagttgtgcagaaggacct 1401
>emb|BX826841.1|CNS0A2D1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB68ZF07 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 2208
Score = 46.1 bits (23), Expect = 0.014
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 744 actgacaaactgaactttggggccatgaacatgtggttt 782
|||||||||||||| ||||| || ||||| |||||||||
Sbjct: 1269 actgacaaactgaattttggtgcaatgaagatgtggttt 1307
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 46.1 bits (23), Expect = 0.014
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 744 actgacaaactgaactttggggccatgaacatgtggttt 782
|||||||||||||| ||||| || ||||| |||||||||
Sbjct: 13853279 actgacaaactgaattttggtgcaatgaagatgtggttt 13853317
>dbj|AB016886.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCA23
Length = 82503
Score = 46.1 bits (23), Expect = 0.014
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1045 tggatgatgatatagttgtccagagggacct 1075
||||||||||||||||||| |||| ||||||
Sbjct: 27128 tggatgatgatatagttgtgcagaaggacct 27158
>emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project)
Length = 147215
Score = 46.1 bits (23), Expect = 0.014
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 744 actgacaaactgaactttggggccatgaacatgtggttt 782
|||||||||||||| ||||| || ||||| |||||||||
Sbjct: 128507 actgacaaactgaattttggtgcaatgaagatgtggttt 128545
>emb|AL035539.1|ATF22I13 Arabidopsis thaliana DNA chromosome 4, BAC clone F22I13 (ESSA
project)
Length = 93760
Score = 46.1 bits (23), Expect = 0.014
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 744 actgacaaactgaactttggggccatgaacatgtggttt 782
|||||||||||||| ||||| || ||||| |||||||||
Sbjct: 8473 actgacaaactgaattttggtgcaatgaagatgtggttt 8511
>emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89
Length = 199789
Score = 46.1 bits (23), Expect = 0.014
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 744 actgacaaactgaactttggggccatgaacatgtggttt 782
|||||||||||||| ||||| || ||||| |||||||||
Sbjct: 49430 actgacaaactgaattttggtgcaatgaagatgtggttt 49468
>ref|NM_124152.2| Arabidopsis thaliana transferase, transferring glycosyl groups
AT5G47780 mRNA, complete cds
Length = 2075
Score = 46.1 bits (23), Expect = 0.014
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1045 tggatgatgatatagttgtccagagggacct 1075
||||||||||||||||||| |||| ||||||
Sbjct: 1391 tggatgatgatatagttgtgcagaaggacct 1421
>ref|NM_119989.3| Arabidopsis thaliana transferase, transferring glycosyl groups
AT4G38270 mRNA, complete cds
Length = 2247
Score = 46.1 bits (23), Expect = 0.014
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 744 actgacaaactgaactttggggccatgaacatgtggttt 782
|||||||||||||| ||||| || ||||| |||||||||
Sbjct: 1271 actgacaaactgaattttggtgcaatgaagatgtggttt 1309
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 46.1 bits (23), Expect = 0.014
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 744 actgacaaactgaactttggggccatgaacatgtggttt 782
|||||||||||||| ||||| || ||||| |||||||||
Sbjct: 17940483 actgacaaactgaattttggtgcaatgaagatgtggttt 17940521
>gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone AVR2-A8 similar
to hypothetical protein targeted to chloroplast, mRNA
sequence
Length = 456
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1188 cgtacctgcccgggcggccgc 1208
|||||||||||||||||||||
Sbjct: 435 cgtacctgcccgggcggccgc 455
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 778,756
Number of Sequences: 1013581
Number of extensions: 778756
Number of successful extensions: 58018
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55471
Number of HSP's gapped (non-prelim): 2519
length of query: 1208
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1188
effective length of database: 888,669,252
effective search space: 1055739071376
effective search space used: 1055739071376
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)