BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3183567.2.1
(681 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|N37676.1|N37676 18903 Lambda-PRL2 Arabidopsis thaliana c... 44 0.031
gb|BE038005.1|BE038005 AA07F03 AA Arabidopsis thaliana cDNA... 44 0.031
gb|AV783775.1|AV783775 AV783775 RAFL5 Arabidopsis thaliana ... 44 0.031
gb|AV560501.1|AV560501 AV560501 Arabidopsis thaliana green ... 44 0.031
gb|AV562373.1|AV562373 AV562373 Arabidopsis thaliana green ... 44 0.031
gb|AF412071.1|AF412071 Arabidopsis thaliana AT3g16920/K14A1... 44 0.031
gb|AY090261.1| Arabidopsis thaliana AT3g16920/K14A17_4 mRNA... 44 0.031
emb|AL954570.1| Arabidopsis thaliana transposon insertion S... 44 0.031
dbj|AB026636.1| Arabidopsis thaliana genomic DNA, chromosom... 44 0.031
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 44 0.031
ref|NM_112568.3| Arabidopsis thaliana chitinase AT3G16920 m... 44 0.031
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 44 0.031
>gb|N37676.1|N37676 18903 Lambda-PRL2 Arabidopsis thaliana cDNA clone 208E21T7 3', mRNA
sequence
Length = 488
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 574 ggcgtcatccaccgccacatcgccgc 599
||||||||||||||||| ||||||||
Sbjct: 80 ggcgtcatccaccgccaaatcgccgc 55
>gb|BE038005.1|BE038005 AA07F03 AA Arabidopsis thaliana cDNA 5' similar to chitinase, mRNA
sequence
Length = 730
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 574 ggcgtcatccaccgccacatcgccgc 599
||||||||||||||||| ||||||||
Sbjct: 485 ggcgtcatccaccgccaaatcgccgc 510
>gb|AV783775.1|AV783775 AV783775 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-13-A08 3',
mRNA sequence
Length = 702
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 574 ggcgtcatccaccgccacatcgccgc 599
||||||||||||||||| ||||||||
Sbjct: 441 ggcgtcatccaccgccaaatcgccgc 466
>gb|AV560501.1|AV560501 AV560501 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ135g02F 3', mRNA sequence
Length = 561
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 574 ggcgtcatccaccgccacatcgccgc 599
||||||||||||||||| ||||||||
Sbjct: 483 ggcgtcatccaccgccaaatcgccgc 508
>gb|AV562373.1|AV562373 AV562373 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ169b01F 3', mRNA sequence
Length = 506
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 574 ggcgtcatccaccgccacatcgccgc 599
||||||||||||||||| ||||||||
Sbjct: 447 ggcgtcatccaccgccaaatcgccgc 472
>gb|AF412071.1|AF412071 Arabidopsis thaliana AT3g16920/K14A17_4 mRNA, complete cds
Length = 1204
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 574 ggcgtcatccaccgccacatcgccgc 599
||||||||||||||||| ||||||||
Sbjct: 722 ggcgtcatccaccgccaaatcgccgc 697
>gb|AY090261.1| Arabidopsis thaliana AT3g16920/K14A17_4 mRNA, complete cds
Length = 1002
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 574 ggcgtcatccaccgccacatcgccgc 599
||||||||||||||||| ||||||||
Sbjct: 692 ggcgtcatccaccgccaaatcgccgc 667
>emb|AL954570.1| Arabidopsis thaliana transposon insertion STS GT_3.655, sequence
tagged site
Length = 338
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 574 ggcgtcatccaccgccacatcgccgc 599
||||||||||||||||| ||||||||
Sbjct: 67 ggcgtcatccaccgccaaatcgccgc 42
>dbj|AB026636.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14A17
Length = 92620
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 574 ggcgtcatccaccgccacatcgccgc 599
||||||||||||||||| ||||||||
Sbjct: 8773 ggcgtcatccaccgccaaatcgccgc 8798
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 574 ggcgtcatccaccgccacatcgccgc 599
||||||||||||||||| ||||||||
Sbjct: 5754223 ggcgtcatccaccgccaaatcgccgc 5754248
>ref|NM_112568.3| Arabidopsis thaliana chitinase AT3G16920 mRNA, complete cds
Length = 1213
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 574 ggcgtcatccaccgccacatcgccgc 599
||||||||||||||||| ||||||||
Sbjct: 726 ggcgtcatccaccgccaaatcgccgc 701
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 574 ggcgtcatccaccgccacatcgccgc 599
||||||||||||||||| ||||||||
Sbjct: 5776979 ggcgtcatccaccgccaaatcgccgc 5777004
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 278,377
Number of Sequences: 1013581
Number of extensions: 278377
Number of successful extensions: 22808
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22533
Number of HSP's gapped (non-prelim): 275
length of query: 681
length of database: 908,940,872
effective HSP length: 20
effective length of query: 661
effective length of database: 888,669,252
effective search space: 587410375572
effective search space used: 587410375572
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)