BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3128444.2.1
(857 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB016877.1| Arabidopsis thaliana genomic DNA, chromosom... 46 0.010
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 46 0.010
gb|CL506354.1|CL506354 SAIL_765_F11.v1 SAIL Collection Arab... 44 0.039
gb|BP785598.1|BP785598 BP785598 RAFL7 Arabidopsis thaliana ... 44 0.039
gb|BT010611.1| Arabidopsis thaliana At5g36890 gene, complet... 44 0.039
dbj|AK175760.1| Arabidopsis thaliana mRNA for beta-glucosid... 44 0.039
ref|NM_123047.2| Arabidopsis thaliana hydrolase, hydrolyzin... 44 0.039
ref|NM_001036898.1| Arabidopsis thaliana hydrolase, hydroly... 44 0.039
>dbj|AB016877.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLF18
Length = 74842
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 34 attgactttcaacttggatggta 56
|||||||||||||||||||||||
Sbjct: 3522 attgactttcaacttggatggta 3500
Score = 44.1 bits (22), Expect = 0.039
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgggc 572
||||| |||||||| | ||||||||||||||||||||
Sbjct: 2055 tactttgcgtggtcgctgctggacaacttcgagtgggc 2018
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 34 attgactttcaacttggatggta 56
|||||||||||||||||||||||
Sbjct: 14561034 attgactttcaacttggatggta 14561012
Score = 44.1 bits (22), Expect = 0.039
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgggc 572
||||| |||||||| | ||||||||||||||||||||
Sbjct: 14559567 tactttgcgtggtcgctgctggacaacttcgagtgggc 14559530
>gb|CL506354.1|CL506354 SAIL_765_F11.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_765_F11.v1, DNA sequence
Length = 939
Score = 44.1 bits (22), Expect = 0.039
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgggc 572
||||| |||||||| | ||||||||||||||||||||
Sbjct: 453 tactttgcgtggtcgctgctggacaacttcgagtgggc 416
>gb|BP785598.1|BP785598 BP785598 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-95-I24 3',
mRNA sequence
Length = 406
Score = 44.1 bits (22), Expect = 0.039
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgggc 572
||||| |||||||| | ||||||||||||||||||||
Sbjct: 342 tactttgcgtggtcgctgctggacaacttcgagtgggc 305
>gb|BT010611.1| Arabidopsis thaliana At5g36890 gene, complete cds
Length = 1473
Score = 44.1 bits (22), Expect = 0.039
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgggc 572
||||| |||||||| | ||||||||||||||||||||
Sbjct: 1300 tactttgcgtggtcgctgctggacaacttcgagtgggc 1337
Score = 44.1 bits (22), Expect = 0.039
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 34 attgactttcaacttggatggt 55
||||||||||||||||||||||
Sbjct: 793 attgactttcaacttggatggt 814
>dbj|AK175760.1| Arabidopsis thaliana mRNA for beta-glucosidase -like protein,
complete cds, clone: RAFL22-32-D12
Length = 1760
Score = 44.1 bits (22), Expect = 0.039
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgggc 572
||||| |||||||| | ||||||||||||||||||||
Sbjct: 1440 tactttgcgtggtcgctgctggacaacttcgagtgggc 1477
Score = 44.1 bits (22), Expect = 0.039
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 34 attgactttcaacttggatggt 55
||||||||||||||||||||||
Sbjct: 933 attgactttcaacttggatggt 954
>ref|NM_123047.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT5G36890 transcript variant AT5G36890.1 mRNA, complete
cds
Length = 1473
Score = 44.1 bits (22), Expect = 0.039
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgggc 572
||||| |||||||| | ||||||||||||||||||||
Sbjct: 1300 tactttgcgtggtcgctgctggacaacttcgagtgggc 1337
Score = 44.1 bits (22), Expect = 0.039
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 34 attgactttcaacttggatggt 55
||||||||||||||||||||||
Sbjct: 793 attgactttcaacttggatggt 814
>ref|NM_001036898.1| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT5G36890 transcript variant AT5G36890.2 mRNA, complete
cds
Length = 1780
Score = 44.1 bits (22), Expect = 0.039
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 535 tacttcgcgtggtcattcctggacaacttcgagtgggc 572
||||| |||||||| | ||||||||||||||||||||
Sbjct: 1439 tactttgcgtggtcgctgctggacaacttcgagtgggc 1476
Score = 44.1 bits (22), Expect = 0.039
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 34 attgactttcaacttggatggt 55
||||||||||||||||||||||
Sbjct: 932 attgactttcaacttggatggt 953
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 389,410
Number of Sequences: 1013581
Number of extensions: 389410
Number of successful extensions: 30679
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30434
Number of HSP's gapped (non-prelim): 245
length of query: 857
length of database: 908,940,872
effective HSP length: 20
effective length of query: 837
effective length of database: 888,669,252
effective search space: 743816163924
effective search space used: 743816163924
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)