BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115208.2.3
(672 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AL084275.1|CNS00PAT Arabidopsis thaliana genome survey ... 44 0.031
gb|BT003958.1| Arabidopsis thaliana clone RAFL15-11-H21 (R2... 44 0.031
gb|BT005058.1| Arabidopsis thaliana clone U20780 putative p... 44 0.031
emb|BX000300.1| Arabidopsis thaliana transposon insertion S... 44 0.031
emb|BX295228.1| Arabidopsis thaliana transposon insertion S... 44 0.031
dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosom... 44 0.031
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 44 0.031
ref|NM_112184.2| Arabidopsis thaliana SKS11; copper ion bin... 44 0.031
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 44 0.031
gb|AI995603.1|AI995603 701675059 A. thaliana, Columbia Col-... 40 0.48
gb|BP640292.1|BP640292 BP640292 RAFL19 Arabidopsis thaliana... 40 0.48
gb|AY056409.1| Arabidopsis thaliana AT3g13400/MRP15_3 mRNA,... 40 0.48
gb|AY072225.1| Arabidopsis thaliana putative pollen specifi... 40 0.48
gb|AY096473.1| Arabidopsis thaliana putative pollen-specifi... 40 0.48
dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosom... 40 0.48
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 40 0.48
emb|AL391710.1|ATT6I14 Arabidopsis thaliana DNA chromosome ... 40 0.48
ref|NM_112185.2| Arabidopsis thaliana SKS13; copper ion bin... 40 0.48
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 40 0.48
>emb|AL084275.1|CNS00PAT Arabidopsis thaliana genome survey sequence T7 end of BAC F8I10 of
IGF library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 248
Score = 44.1 bits (22), Expect = 0.031
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 61 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagag 102
|||||||||||||||| | || || ||||||| |||||||||
Sbjct: 120 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 79
>gb|BT003958.1| Arabidopsis thaliana clone RAFL15-11-H21 (R20780) putative
pectinesterase (pectin methylesterase) family protein
(At3g13390) mRNA, complete cds
Length = 2083
Score = 44.1 bits (22), Expect = 0.031
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 61 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagag 102
|||||||||||||||| | || || ||||||| |||||||||
Sbjct: 1321 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 1362
>gb|BT005058.1| Arabidopsis thaliana clone U20780 putative pectinesterase (pectin
methylesterase) family protein (At3g13390) mRNA, complete
cds
Length = 1696
Score = 44.1 bits (22), Expect = 0.031
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 61 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagag 102
|||||||||||||||| | || || ||||||| |||||||||
Sbjct: 1275 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 1316
>emb|BX000300.1| Arabidopsis thaliana transposon insertion STS SM_3.21771, sequence
tagged site
Length = 360
Score = 44.1 bits (22), Expect = 0.031
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 61 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagag 102
|||||||||||||||| | || || ||||||| |||||||||
Sbjct: 197 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 238
>emb|BX295228.1| Arabidopsis thaliana transposon insertion STS SM_3.2507, sequence
tagged site
Length = 300
Score = 44.1 bits (22), Expect = 0.031
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 61 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagag 102
|||||||||||||||| | || || ||||||| |||||||||
Sbjct: 195 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 236
>dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRP15
Length = 83287
Score = 44.1 bits (22), Expect = 0.031
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 61 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagag 102
|||||||||||||||| | || || ||||||| |||||||||
Sbjct: 5857 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 5816
Score = 40.1 bits (20), Expect = 0.48
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 78 tcgtcttcgagaaccccgagaagagcat 105
||||||||||||||| |||||| |||||
Sbjct: 10754 tcgtcttcgagaaccacgagaaaagcat 10781
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 44.1 bits (22), Expect = 0.031
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 61 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagag 102
|||||||||||||||| | || || ||||||| |||||||||
Sbjct: 4345233 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 4345192
Score = 40.1 bits (20), Expect = 0.48
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 78 tcgtcttcgagaaccccgagaagagcat 105
||||||||||||||| |||||| |||||
Sbjct: 4350130 tcgtcttcgagaaccacgagaaaagcat 4350157
>ref|NM_112184.2| Arabidopsis thaliana SKS11; copper ion binding AT3G13390 (SKS11)
mRNA, complete cds
Length = 2067
Score = 44.1 bits (22), Expect = 0.031
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 61 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagag 102
|||||||||||||||| | || || ||||||| |||||||||
Sbjct: 1321 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 1362
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 44.1 bits (22), Expect = 0.031
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 61 ccgcaccttcatcgagatcgtcttcgagaaccccgagaagag 102
|||||||||||||||| | || || ||||||| |||||||||
Sbjct: 4351934 ccgcaccttcatcgaggtggtgtttgagaaccacgagaagag 4351893
Score = 40.1 bits (20), Expect = 0.48
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 78 tcgtcttcgagaaccccgagaagagcat 105
||||||||||||||| |||||| |||||
Sbjct: 4356831 tcgtcttcgagaaccacgagaaaagcat 4356858
>gb|AI995603.1|AI995603 701675059 A. thaliana, Columbia Col-0, inflorescence-1 Arabidopsis
thaliana cDNA clone 701675059, mRNA sequence
Length = 562
Score = 40.1 bits (20), Expect = 0.48
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 78 tcgtcttcgagaaccccgagaagagcat 105
||||||||||||||| |||||| |||||
Sbjct: 473 tcgtcttcgagaaccacgagaaaagcat 446
>gb|BP640292.1|BP640292 BP640292 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-51-D08 3',
mRNA sequence
Length = 460
Score = 40.1 bits (20), Expect = 0.48
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 78 tcgtcttcgagaaccccgagaagagcat 105
||||||||||||||| |||||| |||||
Sbjct: 440 tcgtcttcgagaaccacgagaaaagcat 413
>gb|AY056409.1| Arabidopsis thaliana AT3g13400/MRP15_3 mRNA, complete cds
Length = 1879
Score = 40.1 bits (20), Expect = 0.48
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 78 tcgtcttcgagaaccccgagaagagcat 105
||||||||||||||| |||||| |||||
Sbjct: 1405 tcgtcttcgagaaccacgagaaaagcat 1432
>gb|AY072225.1| Arabidopsis thaliana putative pollen specific protein (At3g13400)
mRNA, complete cds
Length = 1895
Score = 40.1 bits (20), Expect = 0.48
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 78 tcgtcttcgagaaccccgagaagagcat 105
||||||||||||||| |||||| |||||
Sbjct: 1405 tcgtcttcgagaaccacgagaaaagcat 1432
>gb|AY096473.1| Arabidopsis thaliana putative pollen-specific protein (At3g13400)
mRNA, complete cds
Length = 1687
Score = 40.1 bits (20), Expect = 0.48
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 78 tcgtcttcgagaaccccgagaagagcat 105
||||||||||||||| |||||| |||||
Sbjct: 1286 tcgtcttcgagaaccacgagaaaagcat 1313
>dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSH12
Length = 79259
Score = 40.1 bits (20), Expect = 0.48
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 496 aatccaaactcaaaagaacaaata 519
|||| |||||||||||||||||||
Sbjct: 6704 aatcaaaactcaaaagaacaaata 6727
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 40.1 bits (20), Expect = 0.48
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 496 aatccaaactcaaaagaacaaata 519
|||| |||||||||||||||||||
Sbjct: 4176474 aatcaaaactcaaaagaacaaata 4176497
>emb|AL391710.1|ATT6I14 Arabidopsis thaliana DNA chromosome 5, BAC clone T6I14 (ESSA project)
Length = 90472
Score = 40.1 bits (20), Expect = 0.48
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 496 aatccaaactcaaaagaacaaata 519
|||| |||||||||||||||||||
Sbjct: 45962 aatcaaaactcaaaagaacaaata 45985
>ref|NM_112185.2| Arabidopsis thaliana SKS13; copper ion binding AT3G13400 (SKS13)
mRNA, complete cds
Length = 1898
Score = 40.1 bits (20), Expect = 0.48
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 78 tcgtcttcgagaaccccgagaagagcat 105
||||||||||||||| |||||| |||||
Sbjct: 1405 tcgtcttcgagaaccacgagaaaagcat 1432
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 40.1 bits (20), Expect = 0.48
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 496 aatccaaactcaaaagaacaaata 519
|||| |||||||||||||||||||
Sbjct: 4363501 aatcaaaactcaaaagaacaaata 4363524
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 284,808
Number of Sequences: 1013581
Number of extensions: 284808
Number of successful extensions: 22617
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22141
Number of HSP's gapped (non-prelim): 476
length of query: 672
length of database: 908,940,872
effective HSP length: 20
effective length of query: 652
effective length of database: 888,669,252
effective search space: 579412352304
effective search space used: 579412352304
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)