BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115190.2.2
(1172 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BH242934.1|BH242934 AUITH94TF AUIT Arabidopsis thaliana ... 54 6e-005
emb|BX944901.1| Arabidopsis thaliana T-DNA flanking sequenc... 54 6e-005
gb|AV541937.1|AV541937 AV541937 Arabidopsis thaliana roots ... 54 6e-005
gb|CK120741.1|CK120741 206d06.p1 AtM1 Arabidopsis thaliana ... 54 6e-005
gb|BT004191.1| Arabidopsis thaliana clone RAFL15-38-P13 (R5... 54 6e-005
gb|AY084341.1| Arabidopsis thaliana clone 104915 mRNA, comp... 54 6e-005
gb|AC008261.5|ATAC008261 Arabidopsis thaliana chromosome II... 54 6e-005
gb|AC010676.6|ATAC010676 Arabidopsis thaliana chromosome II... 54 6e-005
emb|BX822786.1|CNS0A4UR Arabidopsis thaliana Full-length cD... 54 6e-005
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 54 6e-005
dbj|AK221131.1| Arabidopsis thaliana mRNA for pectate lyase... 54 6e-005
ref|NM_110993.2| Arabidopsis thaliana lyase/ pectate lyase ... 54 6e-005
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 54 6e-005
emb|BX003529.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.014
emb|CR396982.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.014
gb|BP839865.1|BP839865 BP839865 RAFL19 Arabidopsis thaliana... 46 0.014
gb|AV797304.1|AV797304 AV797304 RAFL9 Arabidopsis thaliana ... 44 0.054
gb|AV566201.1|AV566201 AV566201 Arabidopsis thaliana green ... 44 0.054
gb|CK120551.1|CK120551 206p18.p1 AtM1 Arabidopsis thaliana ... 44 0.054
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 44 0.054
gb|AY054200.1| Arabidopsis thaliana At1g04680/T1G11_6 mRNA,... 44 0.054
gb|AY066033.1| Arabidopsis thaliana At1g04680/T1G11_6 mRNA,... 44 0.054
gb|AY065034.1| Arabidopsis thaliana At1g04680/T1G11_6 mRNA,... 44 0.054
emb|AX506309.1| Sequence 1004 from Patent WO0216655 44 0.054
gb|AY087724.1| Arabidopsis thaliana clone 37952 mRNA, compl... 44 0.054
gb|AC002376.1|T1G11 Sequence of BAC T1G11 from Arabidopsis ... 44 0.054
emb|BX817792.1|CNS0AAQA Arabidopsis thaliana Full-length cD... 44 0.054
ref|NM_100348.2| Arabidopsis thaliana lyase/ pectate lyase ... 44 0.054
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 44 0.054
>gb|BH242934.1|BH242934 AUITH94TF AUIT Arabidopsis thaliana genomic clone AUITH94, DNA
sequence
Length = 705
Score = 54.0 bits (27), Expect = 6e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacac 521
|||||| ||||||| ||| ||| ||||| ||| |||||||||||||||| ||||||||
Sbjct: 522 gtgcagaggatgcctagggtccgatggggtttcgtccacgttgtcaacaatgactacac 464
>emb|BX944901.1| Arabidopsis thaliana T-DNA flanking sequence GK-703E09-025105,
genomic survey sequence
Length = 454
Score = 54.0 bits (27), Expect = 6e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacac 521
|||||| ||||||| ||| ||| ||||| ||| |||||||||||||||| ||||||||
Sbjct: 245 gtgcagaggatgcctagggtccgatggggtttcgtccacgttgtcaacaatgactacac 303
>gb|AV541937.1|AV541937 AV541937 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ174b03F 3', mRNA sequence
Length = 569
Score = 54.0 bits (27), Expect = 6e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacac 521
|||||| ||||||| ||| ||| ||||| ||| |||||||||||||||| ||||||||
Sbjct: 481 gtgcagaggatgcctagggtccgatggggtttcgtccacgttgtcaacaatgactacac 423
>gb|CK120741.1|CK120741 206d06.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011D06206
5-PRIME, mRNA sequence
Length = 798
Score = 54.0 bits (27), Expect = 6e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacac 521
|||||| ||||||| ||| ||| ||||| ||| |||||||||||||||| ||||||||
Sbjct: 282 gtgcagaggatgcctagggtccgatggggtttcgtccacgttgtcaacaatgactacac 340
>gb|BT004191.1| Arabidopsis thaliana clone RAFL15-38-P13 (R50134) At3g01270 mRNA,
complete sequence
Length = 1719
Score = 54.0 bits (27), Expect = 6e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacac 521
|||||| ||||||| ||| ||| ||||| ||| |||||||||||||||| ||||||||
Sbjct: 1216 gtgcagaggatgcctagggtccgatggggtttcgtccacgttgtcaacaatgactacac 1274
>gb|AY084341.1| Arabidopsis thaliana clone 104915 mRNA, complete sequence
Length = 1812
Score = 54.0 bits (27), Expect = 6e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacac 521
|||||| ||||||| ||| ||| ||||| ||| |||||||||||||||| ||||||||
Sbjct: 1224 gtgcagaggatgcctagggtccgatggggtttcgtccacgttgtcaacaatgactacac 1282
>gb|AC008261.5|ATAC008261 Arabidopsis thaliana chromosome III BAC T4P13 genomic sequence,
complete sequence
Length = 93735
Score = 54.0 bits (27), Expect = 6e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacac 521
|||||| ||||||| ||| ||| ||||| ||| |||||||||||||||| ||||||||
Sbjct: 13813 gtgcagaggatgcctagggtccgatggggtttcgtccacgttgtcaacaatgactacac 13871
>gb|AC010676.6|ATAC010676 Arabidopsis thaliana chromosome III BAC T22N4 genomic sequence,
complete sequence
Length = 58448
Score = 54.0 bits (27), Expect = 6e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacac 521
|||||| ||||||| ||| ||| ||||| ||| |||||||||||||||| ||||||||
Sbjct: 55459 gtgcagaggatgcctagggtccgatggggtttcgtccacgttgtcaacaatgactacac 55517
>emb|BX822786.1|CNS0A4UR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB64ZA09 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 879
Score = 54.0 bits (27), Expect = 6e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacac 521
|||||| ||||||| ||| ||| ||||| ||| |||||||||||||||| ||||||||
Sbjct: 301 gtgcagaggatgcctagggtccgatggggtttcgtccacgttgtcaacaatgactacac 359
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 54.0 bits (27), Expect = 6e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacac 521
|||||| ||||||| ||| ||| ||||| ||| |||||||||||||||| ||||||||
Sbjct: 135828 gtgcagaggatgcctagggtccgatggggtttcgtccacgttgtcaacaatgactacac 135886
Score = 54.0 bits (27), Expect = 6e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacac 521
|||||| ||||||| ||| ||| ||||| ||| |||||||||||||||| ||||||||
Sbjct: 17249 gtgcagaggatgcctagggtccgatggggtttcgtccacgttgtcaacaatgactacac 17307
>dbj|AK221131.1| Arabidopsis thaliana mRNA for pectate lyase like protein, complete
cds, clone: RAFL22-92-L09
Length = 667
Score = 54.0 bits (27), Expect = 6e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacac 521
|||||| ||||||| ||| ||| ||||| ||| |||||||||||||||| ||||||||
Sbjct: 177 gtgcagaggatgcctagggtccgatggggtttcgtccacgttgtcaacaatgactacac 235
>ref|NM_110993.2| Arabidopsis thaliana lyase/ pectate lyase AT3G01270 mRNA, complete
cds
Length = 1809
Score = 54.0 bits (27), Expect = 6e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacac 521
|||||| ||||||| ||| ||| ||||| ||| |||||||||||||||| ||||||||
Sbjct: 1222 gtgcagaggatgcctagggtccgatggggtttcgtccacgttgtcaacaatgactacac 1280
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 54.0 bits (27), Expect = 6e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacac 521
|||||| ||||||| ||| ||| ||||| ||| |||||||||||||||| ||||||||
Sbjct: 83359 gtgcagaggatgcctagggtccgatggggtttcgtccacgttgtcaacaatgactacac 83301
>emb|BX003529.1| Arabidopsis thaliana T-DNA flanking sequence GK-372G04-017096,
genomic survey sequence
Length = 214
Score = 46.1 bits (23), Expect = 0.014
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 487 tggggcttcttccacgttgtcaacaacgactacac 521
||||| ||| |||||||||||||||| ||||||||
Sbjct: 182 tggggtttcgtccacgttgtcaacaatgactacac 148
>emb|CR396982.1| Arabidopsis thaliana T-DNA flanking sequence GK-408G04-025985,
genomic survey sequence
Length = 124
Score = 46.1 bits (23), Expect = 0.014
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 487 tggggcttcttccacgttgtcaacaacgactacac 521
||||| ||| |||||||||||||||| ||||||||
Sbjct: 114 tggggtttcgtccacgttgtcaacaatgactacac 80
>gb|BP839865.1|BP839865 BP839865 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-28-G14 5',
mRNA sequence
Length = 410
Score = 46.1 bits (23), Expect = 0.014
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 463 gtgcagcggatgccaaggtgccgctggggcttcttccacgttgtcaacaacgactacac 521
|||||| ||||||| ||| ||| ||||| ||| |||| ||||||||||| ||||||||
Sbjct: 176 gtgcagaggatgcctagggtccgatggggtttcgtccaggttgtcaacaatgactacac 234
>gb|AV797304.1|AV797304 AV797304 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-11-J07 3',
mRNA sequence
Length = 455
Score = 44.1 bits (22), Expect = 0.054
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 495 cttccacgttgtcaacaacgactacacgcactgg 528
|||||| ||||| |||||||||||||| ||||||
Sbjct: 432 cttccatgttgttaacaacgactacactcactgg 399
>gb|AV566201.1|AV566201 AV566201 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ238h04F 3', mRNA sequence
Length = 601
Score = 44.1 bits (22), Expect = 0.054
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 495 cttccacgttgtcaacaacgactacacgcactgg 528
|||||| ||||| |||||||||||||| ||||||
Sbjct: 569 cttccatgttgttaacaacgactacactcactgg 536
>gb|CK120551.1|CK120551 206p18.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011P18206
5-PRIME, mRNA sequence
Length = 757
Score = 44.1 bits (22), Expect = 0.054
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 495 cttccacgttgtcaacaacgactacacgcactgg 528
|||||| ||||| |||||||||||||| ||||||
Sbjct: 191 cttccatgttgttaacaacgactacactcactgg 224
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 44.1 bits (22), Expect = 0.054
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 495 cttccacgttgtcaacaacgactacacgcactgg 528
|||||| ||||| |||||||||||||| ||||||
Sbjct: 1304571 cttccatgttgttaacaacgactacactcactgg 1304538
>gb|AY054200.1| Arabidopsis thaliana At1g04680/T1G11_6 mRNA, complete cds
Length = 1788
Score = 44.1 bits (22), Expect = 0.054
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 495 cttccacgttgtcaacaacgactacacgcactgg 528
|||||| ||||| |||||||||||||| ||||||
Sbjct: 1047 cttccatgttgttaacaacgactacactcactgg 1080
>gb|AY066033.1| Arabidopsis thaliana At1g04680/T1G11_6 mRNA, complete cds
Length = 1065
Score = 44.1 bits (22), Expect = 0.054
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 495 cttccacgttgtcaacaacgactacacgcactgg 528
|||||| ||||| |||||||||||||| ||||||
Sbjct: 945 cttccatgttgttaacaacgactacactcactgg 978
>gb|AY065034.1| Arabidopsis thaliana At1g04680/T1G11_6 mRNA, complete cds
Length = 1459
Score = 44.1 bits (22), Expect = 0.054
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 495 cttccacgttgtcaacaacgactacacgcactgg 528
|||||| ||||| |||||||||||||| ||||||
Sbjct: 1028 cttccatgttgttaacaacgactacactcactgg 1061
>emb|AX506309.1| Sequence 1004 from Patent WO0216655
Length = 1116
Score = 44.1 bits (22), Expect = 0.054
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 495 cttccacgttgtcaacaacgactacacgcactgg 528
|||||| ||||| |||||||||||||| ||||||
Sbjct: 765 cttccatgttgttaacaacgactacactcactgg 798
>gb|AY087724.1| Arabidopsis thaliana clone 37952 mRNA, complete sequence
Length = 1782
Score = 44.1 bits (22), Expect = 0.054
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 495 cttccacgttgtcaacaacgactacacgcactgg 528
|||||| ||||| |||||||||||||| ||||||
Sbjct: 1047 cttccatgttgttaacaacgactacactcactgg 1080
>gb|AC002376.1|T1G11 Sequence of BAC T1G11 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 100079
Score = 44.1 bits (22), Expect = 0.054
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 495 cttccacgttgtcaacaacgactacacgcactgg 528
|||||| ||||| |||||||||||||| ||||||
Sbjct: 28586 cttccatgttgttaacaacgactacactcactgg 28619
>emb|BX817792.1|CNS0AAQA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL42ZA03 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1706
Score = 44.1 bits (22), Expect = 0.054
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 495 cttccacgttgtcaacaacgactacacgcactgg 528
|||||| ||||| |||||||||||||| ||||||
Sbjct: 1017 cttccatgttgttaacaacgactacactcactgg 1050
>ref|NM_100348.2| Arabidopsis thaliana lyase/ pectate lyase AT1G04680 mRNA, complete
cds
Length = 1921
Score = 44.1 bits (22), Expect = 0.054
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 495 cttccacgttgtcaacaacgactacacgcactgg 528
|||||| ||||| |||||||||||||| ||||||
Sbjct: 1047 cttccatgttgttaacaacgactacactcactgg 1080
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 44.1 bits (22), Expect = 0.054
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 495 cttccacgttgtcaacaacgactacacgcactgg 528
|||||| ||||| |||||||||||||| ||||||
Sbjct: 1304495 cttccatgttgttaacaacgactacactcactgg 1304462
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 414,167
Number of Sequences: 1013581
Number of extensions: 414167
Number of successful extensions: 31028
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30403
Number of HSP's gapped (non-prelim): 625
length of query: 1172
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1152
effective length of database: 888,669,252
effective search space: 1023746978304
effective search space used: 1023746978304
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)