BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106160.2.1
(788 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_129708.1| Arabidopsis thaliana N-acetyltransferase A... 98 3e-018
gb|AQ955270.1|AQ955270 LERAB32TR LERA Arabidopsis thaliana ... 94 4e-017
gb|AC004625.3| Arabidopsis thaliana chromosome 2 clone T26J... 94 4e-017
emb|BX842164.1|CNS09YB9 Arabidopsis thaliana Full-length cD... 94 4e-017
emb|BX824982.1|CNS0A5MB Arabidopsis thaliana Full-length cD... 94 4e-017
gb|AF543710.1| Arabidopsis thaliana elongation defective 1 ... 94 4e-017
ref|NM_111689.3| Arabidopsis thaliana KOB1 (KOBITO) AT3G085... 94 4e-017
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 94 4e-017
gb|AY735623.1| Arabidopsis thaliana hypothetical protein AT... 86 1e-014
gb|AY954853.1| Arabidopsis thaliana hypothetical protein (A... 86 1e-014
ref|NM_115580.3| Arabidopsis thaliana unknown protein AT3G5... 86 1e-014
gb|AQ955269.1|AQ955269 LERAB32TF LERA Arabidopsis thaliana ... 84 4e-014
gb|BH633280.1|BH633280 SALK_041130 Arabidopsis thaliana TDN... 74 4e-011
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 74 4e-011
emb|AL137080.2|ATF28O9 Arabidopsis thaliana DNA chromosome ... 74 4e-011
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 74 4e-011
gb|AC012562.5|AC012562 Arabidopsis thaliana chromosome 3 BA... 66 1e-008
emb|AL358732.1|ATT27I15 Arabidopsis thaliana DNA chromosome... 54 4e-005
ref|NM_115959.1| Arabidopsis thaliana unknown protein AT3G6... 54 4e-005
ref|NM_115967.1| Arabidopsis thaliana unknown protein AT3G6... 54 4e-005
>ref|NM_129708.1| Arabidopsis thaliana N-acetyltransferase AT2G41450 mRNA, complete cds
Length = 2976
Score = 97.6 bits (49), Expect = 3e-018
Identities = 100/117 (85%)
Strand = Plus / Plus
Query: 30 aaattttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagat 89
|||||||||||| | || || ||||||||||| ||||| ||||| || |||||| |||||
Sbjct: 2737 aaattttcagatcttacttcaagacgtgatcgatgtggctgcaaaccaacaaaaaaagat 2796
Query: 90 gttaagagatgtttcatgttagattttgacagagcagcttttataattgcatcaact 146
|| ||||||||||||||| |||| ||||||||||| || || || ||||| ||||||
Sbjct: 2797 gtcaagagatgtttcatgctagactttgacagagccgcattcatcattgcttcaact 2853
>gb|AQ955270.1|AQ955270 LERAB32TR LERA Arabidopsis thaliana genomic clone LERAB32, DNA
sequence
Length = 754
Score = 93.7 bits (47), Expect = 4e-017
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 30 aaattttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagat 89
|||||||||||| | || || ||||||||||| ||||| ||||| || |||||| |||||
Sbjct: 371 aaattttcagatcttacttcaagacgtgatcgatgtggctgcaaaccaacaaaaaaagat 430
Query: 90 gttaagagatgtttcatgttagattttgacagagc 124
|| ||||||||||||||| |||| |||||||||||
Sbjct: 431 gtcaagagatgtttcatgctagactttgacagagc 465
>gb|AC004625.3| Arabidopsis thaliana chromosome 2 clone T26J13 map CIC11C08, complete
sequence
Length = 42499
Score = 93.7 bits (47), Expect = 4e-017
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 30 aaattttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagat 89
|||||||||||| | || || ||||||||||| ||||| ||||| || |||||| |||||
Sbjct: 18006 aaattttcagatcttacttcaagacgtgatcgatgtggctgcaaaccaacaaaaaaagat 18065
Query: 90 gttaagagatgtttcatgttagattttgacagagc 124
|| ||||||||||||||| |||| |||||||||||
Sbjct: 18066 gtcaagagatgtttcatgctagactttgacagagc 18100
>emb|BX842164.1|CNS09YB9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH76ZA05 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1983
Score = 93.7 bits (47), Expect = 4e-017
Identities = 122/147 (82%)
Strand = Plus / Plus
Query: 30 aaattttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagat 89
|||||||| || || ||||| || |||||||| ||||| || |||||||||||||||||
Sbjct: 1221 aaattttctgacttaacatccaggcgtgatcgatgtggctgtaagcctacaaaagaagac 1280
Query: 90 gttaagagatgtttcatgttagattttgacagagcagcttttataattgcatcaactgct 149
|| || ||||| || ||||| || ||||||||| | || ||||||||||| ||||| ||
Sbjct: 1281 gtgaaaagatgctttatgttggactttgacagatctgcatttataattgcgtcaacagca 1340
Query: 150 agtgaagaagaaatgcttcgctggtac 176
| ||| ||||||||||| ||||||||
Sbjct: 1341 actgacgaagaaatgctaagctggtac 1367
>emb|BX824982.1|CNS0A5MB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH87ZB12 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1752
Score = 93.7 bits (47), Expect = 4e-017
Identities = 122/147 (82%)
Strand = Plus / Plus
Query: 30 aaattttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagat 89
|||||||| || || ||||| || |||||||| ||||| || |||||||||||||||||
Sbjct: 1074 aaattttctgacttaacatccaggcgtgatcgatgtggctgtaagcctacaaaagaagac 1133
Query: 90 gttaagagatgtttcatgttagattttgacagagcagcttttataattgcatcaactgct 149
|| || ||||| || ||||| || ||||||||| | || ||||||||||| ||||| ||
Sbjct: 1134 gtgaaaagatgctttatgttggactttgacagatctgcatttataattgcgtcaacagca 1193
Query: 150 agtgaagaagaaatgcttcgctggtac 176
| ||| ||||||||||| ||||||||
Sbjct: 1194 actgacgaagaaatgctaagctggtac 1220
>gb|AF543710.1| Arabidopsis thaliana elongation defective 1 (ELD1) mRNA, complete cds
Length = 1626
Score = 93.7 bits (47), Expect = 4e-017
Identities = 122/147 (82%)
Strand = Plus / Plus
Query: 30 aaattttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagat 89
|||||||| || || ||||| || |||||||| ||||| || |||||||||||||||||
Sbjct: 1126 aaattttctgacttaacatccaggcgtgatcgatgtggctgtaagcctacaaaagaagac 1185
Query: 90 gttaagagatgtttcatgttagattttgacagagcagcttttataattgcatcaactgct 149
|| || ||||| || ||||| || ||||||||| | || ||||||||||| ||||| ||
Sbjct: 1186 gtgaaaagatgctttatgttggactttgacagatctgcatttataattgcgtcaacagca 1245
Query: 150 agtgaagaagaaatgcttcgctggtac 176
| ||| ||||||||||| ||||||||
Sbjct: 1246 actgacgaagaaatgctaagctggtac 1272
>ref|NM_111689.3| Arabidopsis thaliana KOB1 (KOBITO) AT3G08550 (KOB1) mRNA, complete
cds
Length = 1991
Score = 93.7 bits (47), Expect = 4e-017
Identities = 122/147 (82%)
Strand = Plus / Plus
Query: 30 aaattttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagat 89
|||||||| || || ||||| || |||||||| ||||| || |||||||||||||||||
Sbjct: 1199 aaattttctgacttaacatccaggcgtgatcgatgtggctgtaagcctacaaaagaagac 1258
Query: 90 gttaagagatgtttcatgttagattttgacagagcagcttttataattgcatcaactgct 149
|| || ||||| || ||||| || ||||||||| | || ||||||||||| ||||| ||
Sbjct: 1259 gtgaaaagatgctttatgttggactttgacagatctgcatttataattgcgtcaacagca 1318
Query: 150 agtgaagaagaaatgcttcgctggtac 176
| ||| ||||||||||| ||||||||
Sbjct: 1319 actgacgaagaaatgctaagctggtac 1345
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 93.7 bits (47), Expect = 4e-017
Identities = 83/95 (87%)
Strand = Plus / Plus
Query: 30 aaattttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagat 89
|||||||||||| | || || ||||||||||| ||||| ||||| || |||||| |||||
Sbjct: 17291847 aaattttcagatcttacttcaagacgtgatcgatgtggctgcaaaccaacaaaaaaagat 17291906
Query: 90 gttaagagatgtttcatgttagattttgacagagc 124
|| ||||||||||||||| |||| |||||||||||
Sbjct: 17291907 gtcaagagatgtttcatgctagactttgacagagc 17291941
>gb|AY735623.1| Arabidopsis thaliana hypothetical protein AT3G57200 mRNA, complete
cds
Length = 1939
Score = 85.7 bits (43), Expect = 1e-014
Identities = 112/135 (82%)
Strand = Plus / Plus
Query: 32 attttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagatgt 91
|||||||||| | || || ||||||||||| ||||| || ||||| || |||| |||||
Sbjct: 1221 attttcagatcttacttcaagacgtgatcgttgtggctgtaagcccactaaagtggatgt 1280
Query: 92 taagagatgtttcatgttagattttgacagagcagcttttataattgcatcaactgctag 151
||||||||||||||| |||| ||||||||||| || ||||| ||||| ||||| || ||
Sbjct: 1281 caagagatgtttcatgctagagtttgacagagctgcatttattattgcttcaacagcgag 1340
Query: 152 tgaagaagaaatgct 166
| ||| ||||||||
Sbjct: 1341 ttcagaggaaatgct 1355
>gb|AY954853.1| Arabidopsis thaliana hypothetical protein (At3g57200) mRNA, complete
cds
Length = 1545
Score = 85.7 bits (43), Expect = 1e-014
Identities = 112/135 (82%)
Strand = Plus / Plus
Query: 32 attttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagatgt 91
|||||||||| | || || ||||||||||| ||||| || ||||| || |||| |||||
Sbjct: 1074 attttcagatcttacttcaagacgtgatcgttgtggctgtaagcccactaaagtggatgt 1133
Query: 92 taagagatgtttcatgttagattttgacagagcagcttttataattgcatcaactgctag 151
||||||||||||||| |||| ||||||||||| || ||||| ||||| ||||| || ||
Sbjct: 1134 caagagatgtttcatgctagagtttgacagagctgcatttattattgcttcaacagcgag 1193
Query: 152 tgaagaagaaatgct 166
| ||| ||||||||
Sbjct: 1194 ttcagaggaaatgct 1208
>ref|NM_115580.3| Arabidopsis thaliana unknown protein AT3G57200 mRNA, complete cds
Length = 1905
Score = 85.7 bits (43), Expect = 1e-014
Identities = 112/135 (82%)
Strand = Plus / Plus
Query: 32 attttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagatgt 91
|||||||||| | || || ||||||||||| ||||| || ||||| || |||| |||||
Sbjct: 1221 attttcagatcttacttcaagacgtgatcgttgtggctgtaagcccactaaagtggatgt 1280
Query: 92 taagagatgtttcatgttagattttgacagagcagcttttataattgcatcaactgctag 151
||||||||||||||| |||| ||||||||||| || ||||| ||||| ||||| || ||
Sbjct: 1281 caagagatgtttcatgctagagtttgacagagctgcatttattattgcttcaacagcgag 1340
Query: 152 tgaagaagaaatgct 166
| ||| ||||||||
Sbjct: 1341 ttcagaggaaatgct 1355
>gb|AQ955269.1|AQ955269 LERAB32TF LERA Arabidopsis thaliana genomic clone LERAB32, DNA
sequence
Length = 647
Score = 83.8 bits (42), Expect = 4e-014
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 51 agacgtgatcgctgtggatgcaagcctacaaaagaagatgttaagagatgtttcatgtta 110
||||||||||| ||||| ||||| || |||||| ||||||| ||||||||||||||| ||
Sbjct: 637 agacgtgatcgatgtggctgcaaaccaacaaaaaaagatgtcaagagatgtttcatgcta 578
Query: 111 gattttgacagagc 124
|| |||||||||||
Sbjct: 577 gactttgacagagc 564
>gb|BH633280.1|BH633280 SALK_041130 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_041130, DNA sequence
Length = 447
Score = 73.8 bits (37), Expect = 4e-011
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 32 attttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagatgt 91
|||||||||| | || || ||||||||||| ||||| || ||||| || |||| |||||
Sbjct: 136 attttcagatcttacttcaagacgtgatcgttgtggctgtaagcccactaaagtggatgt 195
Query: 92 taagagatgtttcatgttagattttgacagagc 124
||||||||||||||| |||| |||||||||||
Sbjct: 196 caagagatgtttcatgctagagtttgacagagc 228
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 73.8 bits (37), Expect = 4e-011
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 32 attttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagatgt 91
|||||||||| | || || ||||||||||| ||||| || ||||| || |||| |||||
Sbjct: 21134835 attttcagatcttacttcaagacgtgatcgttgtggctgtaagcccactaaagtggatgt 21134894
Query: 92 taagagatgtttcatgttagattttgacagagc 124
||||||||||||||| |||| |||||||||||
Sbjct: 21134895 caagagatgtttcatgctagagtttgacagagc 21134927
Score = 65.9 bits (33), Expect = 1e-008
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 30 aaattttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagat 89
|||||||| || || ||||| || |||||||| ||||| || |||||||||||||||||
Sbjct: 2594661 aaattttctgacttaacatccaggcgtgatcgatgtggctgtaagcctacaaaagaagac 2594720
Query: 90 gttaagagatgtttcatgttagattttgacaga 122
|| || ||||| || ||||| || |||||||||
Sbjct: 2594721 gtgaaaagatgctttatgttggactttgacaga 2594753
Score = 54.0 bits (27), Expect = 4e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 30 aaattttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagat 89
|||||||||||| | || | ||||||||||| ||| | ||||| || | | |||| |||
Sbjct: 22547127 aaattttcagatcttactgcaagacgtgatcgatgttgctgcaaaccaaaagaagaggat 22547186
Query: 90 gttaagagatgtttcatgttagattttgacagagc 124
|| |||| |||||||||| |||| |||||||||||
Sbjct: 22547187 gtcaagatatgtttcatgctagactttgacagagc 22547221
Score = 54.0 bits (27), Expect = 4e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 30 aaattttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagat 89
|||||||||||| | || | ||||||||||| ||| | ||||| || | | |||| |||
Sbjct: 22485946 aaattttcagatcttactgcaagacgtgatcgatgttgctgcaaaccaaaagaagaggat 22486005
Query: 90 gttaagagatgtttcatgttagattttgacagagc 124
|| |||| |||||||||| |||| |||||||||||
Sbjct: 22486006 gtcaagatatgtttcatgctagactttgacagagc 22486040
>emb|AL137080.2|ATF28O9 Arabidopsis thaliana DNA chromosome 3, BAC clone F28O9
Length = 85710
Score = 73.8 bits (37), Expect = 4e-011
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 32 attttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagatgt 91
|||||||||| | || || ||||||||||| ||||| || ||||| || |||| |||||
Sbjct: 10836 attttcagatcttacttcaagacgtgatcgttgtggctgtaagcccactaaagtggatgt 10895
Query: 92 taagagatgtttcatgttagattttgacagagc 124
||||||||||||||| |||| |||||||||||
Sbjct: 10896 caagagatgtttcatgctagagtttgacagagc 10928
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 73.8 bits (37), Expect = 4e-011
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 32 attttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagatgt 91
|||||||||| | || || ||||||||||| ||||| || ||||| || |||| |||||
Sbjct: 21182359 attttcagatcttacttcaagacgtgatcgttgtggctgtaagcccactaaagtggatgt 21182418
Query: 92 taagagatgtttcatgttagattttgacagagc 124
||||||||||||||| |||| |||||||||||
Sbjct: 21182419 caagagatgtttcatgctagagtttgacagagc 21182451
Score = 65.9 bits (33), Expect = 1e-008
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 30 aaattttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagat 89
|||||||| || || ||||| || |||||||| ||||| || |||||||||||||||||
Sbjct: 2598686 aaattttctgacttaacatccaggcgtgatcgatgtggctgtaagcctacaaaagaagac 2598745
Query: 90 gttaagagatgtttcatgttagattttgacaga 122
|| || ||||| || ||||| || |||||||||
Sbjct: 2598746 gtgaaaagatgctttatgttggactttgacaga 2598778
Score = 54.0 bits (27), Expect = 4e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 30 aaattttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagat 89
|||||||||||| | || | ||||||||||| ||| | ||||| || | | |||| |||
Sbjct: 22599828 aaattttcagatcttactgcaagacgtgatcgatgttgctgcaaaccaaaagaagaggat 22599887
Query: 90 gttaagagatgtttcatgttagattttgacagagc 124
|| |||| |||||||||| |||| |||||||||||
Sbjct: 22599888 gtcaagatatgtttcatgctagactttgacagagc 22599922
Score = 54.0 bits (27), Expect = 4e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 30 aaattttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagat 89
|||||||||||| | || | ||||||||||| ||| | ||||| || | | |||| |||
Sbjct: 22538647 aaattttcagatcttactgcaagacgtgatcgatgttgctgcaaaccaaaagaagaggat 22538706
Query: 90 gttaagagatgtttcatgttagattttgacagagc 124
|| |||| |||||||||| |||| |||||||||||
Sbjct: 22538707 gtcaagatatgtttcatgctagactttgacagagc 22538741
>gb|AC012562.5|AC012562 Arabidopsis thaliana chromosome 3 BAC F17O14 genomic sequence,
complete sequence
Length = 90721
Score = 65.9 bits (33), Expect = 1e-008
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 30 aaattttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagat 89
|||||||| || || ||||| || |||||||| ||||| || |||||||||||||||||
Sbjct: 9603 aaattttctgacttaacatccaggcgtgatcgatgtggctgtaagcctacaaaagaagac 9662
Query: 90 gttaagagatgtttcatgttagattttgacaga 122
|| || ||||| || ||||| || |||||||||
Sbjct: 9663 gtgaaaagatgctttatgttggactttgacaga 9695
>emb|AL358732.1|ATT27I15 Arabidopsis thaliana DNA chromosome 3, BAC clone T27I15
Length = 112584
Score = 54.0 bits (27), Expect = 4e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 30 aaattttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagat 89
|||||||||||| | || | ||||||||||| ||| | ||||| || | | |||| |||
Sbjct: 86649 aaattttcagatcttactgcaagacgtgatcgatgttgctgcaaaccaaaagaagaggat 86708
Query: 90 gttaagagatgtttcatgttagattttgacagagc 124
|| |||| |||||||||| |||| |||||||||||
Sbjct: 86709 gtcaagatatgtttcatgctagactttgacagagc 86743
Score = 54.0 bits (27), Expect = 4e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 30 aaattttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagat 89
|||||||||||| | || | ||||||||||| ||| | ||||| || | | |||| |||
Sbjct: 25468 aaattttcagatcttactgcaagacgtgatcgatgttgctgcaaaccaaaagaagaggat 25527
Query: 90 gttaagagatgtttcatgttagattttgacagagc 124
|| |||| |||||||||| |||| |||||||||||
Sbjct: 25528 gtcaagatatgtttcatgctagactttgacagagc 25562
>ref|NM_115959.1| Arabidopsis thaliana unknown protein AT3G60950 mRNA, complete cds
Length = 1779
Score = 54.0 bits (27), Expect = 4e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 30 aaattttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagat 89
|||||||||||| | || | ||||||||||| ||| | ||||| || | | |||| |||
Sbjct: 961 aaattttcagatcttactgcaagacgtgatcgatgttgctgcaaaccaaaagaagaggat 1020
Query: 90 gttaagagatgtttcatgttagattttgacagagc 124
|| |||| |||||||||| |||| |||||||||||
Sbjct: 1021 gtcaagatatgtttcatgctagactttgacagagc 1055
>ref|NM_115967.1| Arabidopsis thaliana unknown protein AT3G61030 mRNA, complete cds
Length = 1779
Score = 54.0 bits (27), Expect = 4e-005
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 30 aaattttcagatttgacatctagacgtgatcgctgtggatgcaagcctacaaaagaagat 89
|||||||||||| | || | ||||||||||| ||| | ||||| || | | |||| |||
Sbjct: 961 aaattttcagatcttactgcaagacgtgatcgatgttgctgcaaaccaaaagaagaggat 1020
Query: 90 gttaagagatgtttcatgttagattttgacagagc 124
|| |||| |||||||||| |||| |||||||||||
Sbjct: 1021 gtcaagatatgtttcatgctagactttgacagagc 1055
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 550,635
Number of Sequences: 1013581
Number of extensions: 550635
Number of successful extensions: 50856
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49424
Number of HSP's gapped (non-prelim): 1430
length of query: 788
length of database: 908,940,872
effective HSP length: 20
effective length of query: 768
effective length of database: 888,669,252
effective search space: 682497985536
effective search space used: 682497985536
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)