BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071743.2.1
(586 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY030192.1| Arabidopsis thaliana clone A1-2 KANADI prote... 42 0.11
gb|AY048688.1| Arabidopsis thaliana GARP-like putative tran... 42 0.11
emb|BX830211.1|CNS0A1IH Arabidopsis thaliana Full-length cD... 42 0.11
ref|NM_121662.2| Arabidopsis thaliana KAN (KANADI); transcr... 42 0.11
gb|AY060559.1| Arabidopsis thaliana At2g03500/T4M8.7 mRNA, ... 40 0.42
gb|AY133630.1| Arabidopsis thaliana At2g03500/T4M8.7 mRNA, ... 40 0.42
emb|BX819077.1|CNS0A8Y5 Arabidopsis thaliana Full-length cD... 40 0.42
dbj|AK221662.1| Arabidopsis thaliana mRNA for hypothetical ... 40 0.42
ref|NM_126400.2| Arabidopsis thaliana DNA binding / transcr... 40 0.42
>gb|AY030192.1| Arabidopsis thaliana clone A1-2 KANADI protein (KAN) mRNA, complete
cds
Length = 1645
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 547 catgtgaagagccatctgcagaagtatcg 575
||||||||||||||| |||||| ||||||
Sbjct: 1119 catgtgaagagccatttgcagatgtatcg 1147
>gb|AY048688.1| Arabidopsis thaliana GARP-like putative transcription factor
KANADI1 (KAN1) mRNA, complete cds
Length = 1236
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 547 catgtgaagagccatctgcagaagtatcg 575
||||||||||||||| |||||| ||||||
Sbjct: 796 catgtgaagagccatttgcagatgtatcg 824
>emb|BX830211.1|CNS0A1IH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB66ZC07 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1589
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 547 catgtgaagagccatctgcagaagtatcg 575
||||||||||||||| |||||| ||||||
Sbjct: 1062 catgtgaagagccatttgcagatgtatcg 1090
>ref|NM_121662.2| Arabidopsis thaliana KAN (KANADI); transcription factor AT5G16560
(KAN) mRNA, complete cds
Length = 2046
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 547 catgtgaagagccatctgcagaagtatcg 575
||||||||||||||| |||||| ||||||
Sbjct: 1119 catgtgaagagccatttgcagatgtatcg 1147
>gb|AY060559.1| Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds
Length = 1636
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 556 agccatctgcagaagtatcggctt 579
|||||||| |||||||||||||||
Sbjct: 1025 agccatctccagaagtatcggctt 1048
>gb|AY133630.1| Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds
Length = 1299
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 556 agccatctgcagaagtatcggctt 579
|||||||| |||||||||||||||
Sbjct: 838 agccatctccagaagtatcggctt 861
>emb|BX819077.1|CNS0A8Y5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB43ZG06 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1285
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 556 agccatctgcagaagtatcggctt 579
|||||||| |||||||||||||||
Sbjct: 1054 agccatctccagaagtatcggctt 1077
>dbj|AK221662.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
clone: RAFL09-70-E23
Length = 1647
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 556 agccatctgcagaagtatcggctt 579
|||||||| |||||||||||||||
Sbjct: 1025 agccatctccagaagtatcggctt 1048
>ref|NM_126400.2| Arabidopsis thaliana DNA binding / transcription factor AT2G03500
mRNA, complete cds
Length = 1666
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 556 agccatctgcagaagtatcggctt 579
|||||||| |||||||||||||||
Sbjct: 1054 agccatctccagaagtatcggctt 1077
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 300,357
Number of Sequences: 1013581
Number of extensions: 300357
Number of successful extensions: 25511
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25502
Number of HSP's gapped (non-prelim): 9
length of query: 586
length of database: 908,940,872
effective HSP length: 20
effective length of query: 566
effective length of database: 888,669,252
effective search space: 502986796632
effective search space used: 502986796632
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)