BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071418.2.1
(1432 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BH244364.1|BH244364 ATZEE57TR ATZE Arabidopsis thaliana ... 42 0.26
gb|BH244495.1|BH244495 ATZEE03TR ATZE Arabidopsis thaliana ... 42 0.26
gb|BH244662.1|BH244662 ATZEC36TF ATZE Arabidopsis thaliana ... 42 0.26
>gb|BH244364.1|BH244364 ATZEE57TR ATZE Arabidopsis thaliana genomic clone ATZEE57, DNA
sequence
Length = 588
Score = 42.1 bits (21), Expect = 0.26
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 647 ggcggcggcgatggtggcggcggcg 671
|||||||||||||| ||||||||||
Sbjct: 138 ggcggcggcgatggcggcggcggcg 162
>gb|BH244495.1|BH244495 ATZEE03TR ATZE Arabidopsis thaliana genomic clone ATZEE03, DNA
sequence
Length = 411
Score = 42.1 bits (21), Expect = 0.26
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 647 ggcggcggcgatggtggcggcggcg 671
|||||||||||||| ||||||||||
Sbjct: 191 ggcggcggcgatggcggcggcggcg 167
>gb|BH244662.1|BH244662 ATZEC36TF ATZE Arabidopsis thaliana genomic clone ATZEC36, DNA
sequence
Length = 669
Score = 42.1 bits (21), Expect = 0.26
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 647 ggcggcggcgatggtggcggcggcg 671
|||||||||||||| ||||||||||
Sbjct: 32 ggcggcggcgatggcggcggcggcg 56
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 559,880
Number of Sequences: 1013581
Number of extensions: 559880
Number of successful extensions: 43726
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43723
Number of HSP's gapped (non-prelim): 3
length of query: 1432
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1411
effective length of database: 887,655,671
effective search space: 1252482151781
effective search space used: 1252482151781
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)