BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3070863.2.1
(992 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV782008.1|AV782008 AV782008 RAFL4 Arabidopsis thaliana ... 50 7e-004
gb|AV821519.1|AV821519 AV821519 RAFL4 Arabidopsis thaliana ... 50 7e-004
gb|CK117872.1|CK117872 209m20.p1 AtM1 Arabidopsis thaliana ... 50 7e-004
gb|CK119562.1|CK119562 201h22.p1 AtM1 Arabidopsis thaliana ... 50 7e-004
gb|CB254882.1|CB254882 56-E018438-019-009-O14-T7R MPIZ-ADIS... 50 7e-004
gb|AY035106.1| Arabidopsis thaliana unknown protein (At4g05... 50 7e-004
gb|AY113900.1| Arabidopsis thaliana unknown protein (At4g05... 50 7e-004
gb|AY087807.1| Arabidopsis thaliana clone 38543 mRNA, compl... 50 7e-004
emb|BX826379.1|CNS0A2B1 Arabidopsis thaliana Full-length cD... 50 7e-004
ref|NM_116791.1| Arabidopsis thaliana oxidoreductase AT4G05... 50 7e-004
>gb|AV782008.1|AV782008 AV782008 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-12-P17 3',
mRNA sequence
Length = 669
Score = 50.1 bits (25), Expect = 7e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||||||||| || |||||||| | || || || ||||| ||||||| |||||||
Sbjct: 550 atgtatggtgtcactaaaactgctcttctcggactaactaaggcgcttgctgctgagatg 491
Query: 583 ggacccgatactcgtgt 599
| |||||||| |||||
Sbjct: 490 gcccccgatacacgtgt 474
>gb|AV821519.1|AV821519 AV821519 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-12-P17 5',
mRNA sequence
Length = 698
Score = 50.1 bits (25), Expect = 7e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||||||||| || |||||||| | || || || ||||| ||||||| |||||||
Sbjct: 523 atgtatggtgtcactaaaactgctcttctcggactaactaaggcgcttgctgctgagatg 582
Query: 583 ggacccgatactcgtgt 599
| |||||||| |||||
Sbjct: 583 gcccccgatacacgtgt 599
>gb|CK117872.1|CK117872 209m20.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011M20209
5-PRIME, mRNA sequence
Length = 759
Score = 50.1 bits (25), Expect = 7e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||||||||| || |||||||| | || || || ||||| ||||||| |||||||
Sbjct: 509 atgtatggtgtcactaaaactgctcttctcggactaactaaggcgcttgctgctgagatg 568
Query: 583 ggacccgatactcgtgt 599
| |||||||| |||||
Sbjct: 569 gcccccgatacacgtgt 585
>gb|CK119562.1|CK119562 201h22.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011H22201
5-PRIME, mRNA sequence
Length = 809
Score = 50.1 bits (25), Expect = 7e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||||||||| || |||||||| | || || || ||||| ||||||| |||||||
Sbjct: 527 atgtatggtgtcactaaaactgctcttctcggactaactaaggcgcttgctgctgagatg 586
Query: 583 ggacccgatactcgtgt 599
| |||||||| |||||
Sbjct: 587 gcccccgatacacgtgt 603
>gb|CB254882.1|CB254882 56-E018438-019-009-O14-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768O149Q 5-PRIME, mRNA sequence
Length = 621
Score = 50.1 bits (25), Expect = 7e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||||||||| || |||||||| | || || || ||||| ||||||| |||||||
Sbjct: 523 atgtatggtgtcactaaaactgctcttctcggactaactaaggcgcttgctgctgagatg 582
Query: 583 ggacccgatactcgtgt 599
| |||||||| |||||
Sbjct: 583 gcccccgatacacgtgt 599
>gb|AY035106.1| Arabidopsis thaliana unknown protein (At4g05530) mRNA, complete cds
Length = 1087
Score = 50.1 bits (25), Expect = 7e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||||||||| || |||||||| | || || || ||||| ||||||| |||||||
Sbjct: 522 atgtatggtgtcactaaaactgctcttctcggactaactaaggcgcttgctgctgagatg 581
Query: 583 ggacccgatactcgtgt 599
| |||||||| |||||
Sbjct: 582 gcccccgatacacgtgt 598
>gb|AY113900.1| Arabidopsis thaliana unknown protein (At4g05530) mRNA, complete cds
Length = 796
Score = 50.1 bits (25), Expect = 7e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||||||||| || |||||||| | || || || ||||| ||||||| |||||||
Sbjct: 472 atgtatggtgtcactaaaactgctcttctcggactaactaaggcgcttgctgctgagatg 531
Query: 583 ggacccgatactcgtgt 599
| |||||||| |||||
Sbjct: 532 gcccccgatacacgtgt 548
>gb|AY087807.1| Arabidopsis thaliana clone 38543 mRNA, complete sequence
Length = 1123
Score = 50.1 bits (25), Expect = 7e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||||||||| || |||||||| | || || || ||||| ||||||| |||||||
Sbjct: 539 atgtatggtgtcactaaaactgctcttctcggactaactaaggcgcttgctgctgagatg 598
Query: 583 ggacccgatactcgtgt 599
| |||||||| |||||
Sbjct: 599 gcccccgatacacgtgt 615
>emb|BX826379.1|CNS0A2B1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB20ZA05 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1101
Score = 50.1 bits (25), Expect = 7e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||||||||| || |||||||| | || || || ||||| ||||||| |||||||
Sbjct: 527 atgtatggtgtcactaaaactgctcttctcggactaactaaggcgcttgctgctgagatg 586
Query: 583 ggacccgatactcgtgt 599
| |||||||| |||||
Sbjct: 587 gcccccgatacacgtgt 603
>ref|NM_116791.1| Arabidopsis thaliana oxidoreductase AT4G05530 mRNA, complete cds
Length = 1123
Score = 50.1 bits (25), Expect = 7e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||||||||| || |||||||| | || || || ||||| ||||||| |||||||
Sbjct: 539 atgtatggtgtcactaaaactgctcttctcggactaactaaggcgcttgctgctgagatg 598
Query: 583 ggacccgatactcgtgt 599
| |||||||| |||||
Sbjct: 599 gcccccgatacacgtgt 615
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 437,325
Number of Sequences: 1013581
Number of extensions: 437325
Number of successful extensions: 31408
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31398
Number of HSP's gapped (non-prelim): 10
length of query: 992
length of database: 908,940,872
effective HSP length: 20
effective length of query: 972
effective length of database: 888,669,252
effective search space: 863786512944
effective search space used: 863786512944
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)