BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067516.2.1
(605 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX835192.1|BX835192 BX835192 Arabidopsis thaliana Flower... 46 0.007
gb|BX835339.1|BX835339 BX835339 Arabidopsis thaliana Flower... 46 0.007
emb|AX507296.1| Sequence 1991 from Patent WO0216655 46 0.007
emb|AX589885.1| Sequence 67 from Patent WO02081695 46 0.007
emb|AX651293.1| Sequence 78 from Patent WO03000898 46 0.007
gb|AY195743.1| Arabidopsis thaliana xyloglucan galactosyltr... 46 0.007
gb|AC006569.5| Arabidopsis thaliana chromosome 2 clone F11A... 46 0.007
gb|BT023734.1| Arabidopsis thaliana At2g20370 gene, complet... 46 0.007
ref|NM_127596.2| Arabidopsis thaliana MUR3 (MURUS 3); catal... 46 0.007
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 46 0.007
>gb|BX835192.1|BX835192 BX835192 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB31ZG12 3PRIM, mRNA sequence
Length = 1125
Score = 46.1 bits (23), Expect = 0.007
Identities = 80/99 (80%)
Strand = Plus / Plus
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
|||||||||||||||||| |||||||||| ||||| || || || || |||| | ||
Sbjct: 404 acatcaaatgcatctttctgcgtctccagttctgatctcgggtctgcgtagatcagcctt 463
Query: 519 ggtatcagattgatgacctcctctctcatttgcttgacc 557
|| || || |||||||| | |||||||||| |||||||
Sbjct: 464 gggatgaggttgatgacattctctctcattatcttgacc 502
>gb|BX835339.1|BX835339 BX835339 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB85ZE07 3PRIM, mRNA sequence
Length = 613
Score = 46.1 bits (23), Expect = 0.007
Identities = 80/99 (80%)
Strand = Plus / Plus
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
|||||||||||||||||| |||||||||| ||||| || || || || |||| | ||
Sbjct: 417 acatcaaatgcatctttctgcgtctccagttctgatctcgggtctgcgtagatcagcctt 476
Query: 519 ggtatcagattgatgacctcctctctcatttgcttgacc 557
|| || || |||||||| | |||||||||| |||||||
Sbjct: 477 gggatgaggttgatgacattctctctcattatcttgacc 515
>emb|AX507296.1| Sequence 1991 from Patent WO0216655
Length = 1803
Score = 46.1 bits (23), Expect = 0.007
Identities = 80/99 (80%)
Strand = Plus / Minus
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
|||||||||||||||||| |||||||||| ||||| || || || || |||| | ||
Sbjct: 1529 acatcaaatgcatctttctgcgtctccagttctgatctcgggtctgcgtagatcagcctt 1470
Query: 519 ggtatcagattgatgacctcctctctcatttgcttgacc 557
|| || || |||||||| | |||||||||| |||||||
Sbjct: 1469 gggatgaggttgatgacattctctctcattatcttgacc 1431
>emb|AX589885.1| Sequence 67 from Patent WO02081695
Length = 1803
Score = 46.1 bits (23), Expect = 0.007
Identities = 80/99 (80%)
Strand = Plus / Minus
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
|||||||||||||||||| |||||||||| ||||| || || || || |||| | ||
Sbjct: 1529 acatcaaatgcatctttctgcgtctccagttctgatctcgggtctgcgtagatcagcctt 1470
Query: 519 ggtatcagattgatgacctcctctctcatttgcttgacc 557
|| || || |||||||| | |||||||||| |||||||
Sbjct: 1469 gggatgaggttgatgacattctctctcattatcttgacc 1431
>emb|AX651293.1| Sequence 78 from Patent WO03000898
Length = 1803
Score = 46.1 bits (23), Expect = 0.007
Identities = 80/99 (80%)
Strand = Plus / Minus
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
|||||||||||||||||| |||||||||| ||||| || || || || |||| | ||
Sbjct: 1529 acatcaaatgcatctttctgcgtctccagttctgatctcgggtctgcgtagatcagcctt 1470
Query: 519 ggtatcagattgatgacctcctctctcatttgcttgacc 557
|| || || |||||||| | |||||||||| |||||||
Sbjct: 1469 gggatgaggttgatgacattctctctcattatcttgacc 1431
>gb|AY195743.1| Arabidopsis thaliana xyloglucan galactosyltransferase (MUR3) gene,
complete cds
Length = 1860
Score = 46.1 bits (23), Expect = 0.007
Identities = 80/99 (80%)
Strand = Plus / Minus
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
|||||||||||||||||| |||||||||| ||||| || || || || |||| | ||
Sbjct: 1586 acatcaaatgcatctttctgcgtctccagttctgatctcgggtctgcgtagatcagcctt 1527
Query: 519 ggtatcagattgatgacctcctctctcatttgcttgacc 557
|| || || |||||||| | |||||||||| |||||||
Sbjct: 1526 gggatgaggttgatgacattctctctcattatcttgacc 1488
>gb|AC006569.5| Arabidopsis thaliana chromosome 2 clone F11A3 map mi148, complete
sequence
Length = 93868
Score = 46.1 bits (23), Expect = 0.007
Identities = 80/99 (80%)
Strand = Plus / Plus
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
|||||||||||||||||| |||||||||| ||||| || || || || |||| | ||
Sbjct: 17823 acatcaaatgcatctttctgcgtctccagttctgatctcgggtctgcgtagatcagcctt 17882
Query: 519 ggtatcagattgatgacctcctctctcatttgcttgacc 557
|| || || |||||||| | |||||||||| |||||||
Sbjct: 17883 gggatgaggttgatgacattctctctcattatcttgacc 17921
>gb|BT023734.1| Arabidopsis thaliana At2g20370 gene, complete cds
Length = 2069
Score = 46.1 bits (23), Expect = 0.007
Identities = 80/99 (80%)
Strand = Plus / Minus
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
|||||||||||||||||| |||||||||| ||||| || || || || |||| | ||
Sbjct: 1762 acatcaaatgcatctttctgcgtctccagttctgatctcgggtctgcgtagatcagcctt 1703
Query: 519 ggtatcagattgatgacctcctctctcatttgcttgacc 557
|| || || |||||||| | |||||||||| |||||||
Sbjct: 1702 gggatgaggttgatgacattctctctcattatcttgacc 1664
>ref|NM_127596.2| Arabidopsis thaliana MUR3 (MURUS 3); catalytic AT2G20370 (MUR3) mRNA,
complete cds
Length = 2416
Score = 46.1 bits (23), Expect = 0.007
Identities = 80/99 (80%)
Strand = Plus / Minus
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
|||||||||||||||||| |||||||||| ||||| || || || || |||| | ||
Sbjct: 1955 acatcaaatgcatctttctgcgtctccagttctgatctcgggtctgcgtagatcagcctt 1896
Query: 519 ggtatcagattgatgacctcctctctcatttgcttgacc 557
|| || || |||||||| | |||||||||| |||||||
Sbjct: 1895 gggatgaggttgatgacattctctctcattatcttgacc 1857
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 46.1 bits (23), Expect = 0.007
Identities = 80/99 (80%)
Strand = Plus / Minus
Query: 459 acatcaaatgcatctttcaatgtctccagtttcgatcttggatcggcatatatcaccttt 518
|||||||||||||||||| |||||||||| ||||| || || || || |||| | ||
Sbjct: 8801021 acatcaaatgcatctttctgcgtctccagttctgatctcgggtctgcgtagatcagcctt 8800962
Query: 519 ggtatcagattgatgacctcctctctcatttgcttgacc 557
|| || || |||||||| | |||||||||| |||||||
Sbjct: 8800961 gggatgaggttgatgacattctctctcattatcttgacc 8800923
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 391,692
Number of Sequences: 1013581
Number of extensions: 391692
Number of successful extensions: 31090
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30906
Number of HSP's gapped (non-prelim): 184
length of query: 605
length of database: 908,940,872
effective HSP length: 20
effective length of query: 585
effective length of database: 888,669,252
effective search space: 519871512420
effective search space used: 519871512420
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)