BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067450.2.1
(724 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|N96295.1|N96295 21895 Lambda-PRL1 Arabidopsis thaliana c... 42 0.13
gb|AY093113.1| Arabidopsis thaliana unknown protein (At4g31... 42 0.13
emb|AX505683.1| Sequence 378 from Patent WO0216655 42 0.13
gb|BT008424.1| Arabidopsis thaliana At4g31390 gene, complet... 42 0.13
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 42 0.13
emb|CQ805176.1| Sequence 1587 from Patent WO2004035798 42 0.13
emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome ... 42 0.13
emb|AL021633.2|ATF8F16 Arabidopsis thaliana DNA chromosome ... 42 0.13
emb|AL161578.2|ATCHRIV74 Arabidopsis thaliana DNA chromosom... 42 0.13
ref|NM_119288.2| Arabidopsis thaliana unknown protein AT4G3... 42 0.13
ref|NM_001036686.1| Arabidopsis thaliana unknown protein AT... 42 0.13
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 42 0.13
>gb|N96295.1|N96295 21895 Lambda-PRL1 Arabidopsis thaliana cDNA clone G8A3T7, mRNA
sequence
Length = 560
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 254 aagatgatgttcctccattcc 274
|||||||||||||||||||||
Sbjct: 246 aagatgatgttcctccattcc 266
>gb|AY093113.1| Arabidopsis thaliana unknown protein (At4g31390) mRNA, complete cds
Length = 2445
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 254 aagatgatgttcctccattcc 274
|||||||||||||||||||||
Sbjct: 671 aagatgatgttcctccattcc 691
>emb|AX505683.1| Sequence 378 from Patent WO0216655
Length = 1791
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 254 aagatgatgttcctccattcc 274
|||||||||||||||||||||
Sbjct: 577 aagatgatgttcctccattcc 597
>gb|BT008424.1| Arabidopsis thaliana At4g31390 gene, complete cds
Length = 2049
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 254 aagatgatgttcctccattcc 274
|||||||||||||||||||||
Sbjct: 620 aagatgatgttcctccattcc 640
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 254 aagatgatgttcctccattcc 274
|||||||||||||||||||||
Sbjct: 11146793 aagatgatgttcctccattcc 11146813
>emb|CQ805176.1| Sequence 1587 from Patent WO2004035798
Length = 2049
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 254 aagatgatgttcctccattcc 274
|||||||||||||||||||||
Sbjct: 620 aagatgatgttcctccattcc 640
>emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BAC clone F3L17 (ESSA project)
Length = 94319
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 254 aagatgatgttcctccattcc 274
|||||||||||||||||||||
Sbjct: 11896 aagatgatgttcctccattcc 11916
>emb|AL021633.2|ATF8F16 Arabidopsis thaliana DNA chromosome 4, BAC clone F8F16 (ESSA project)
Length = 93038
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 254 aagatgatgttcctccattcc 274
|||||||||||||||||||||
Sbjct: 73779 aagatgatgttcctccattcc 73799
>emb|AL161578.2|ATCHRIV74 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 74
Length = 194920
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 254 aagatgatgttcctccattcc 274
|||||||||||||||||||||
Sbjct: 189881 aagatgatgttcctccattcc 189901
>ref|NM_119288.2| Arabidopsis thaliana unknown protein AT4G31390 transcript variant
AT4G31390.1 mRNA, complete cds
Length = 2445
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 254 aagatgatgttcctccattcc 274
|||||||||||||||||||||
Sbjct: 671 aagatgatgttcctccattcc 691
>ref|NM_001036686.1| Arabidopsis thaliana unknown protein AT4G31390 transcript variant
AT4G31390.2 mRNA, complete cds
Length = 2371
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 254 aagatgatgttcctccattcc 274
|||||||||||||||||||||
Sbjct: 672 aagatgatgttcctccattcc 692
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 254 aagatgatgttcctccattcc 274
|||||||||||||||||||||
Sbjct: 15234023 aagatgatgttcctccattcc 15234043
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 303,608
Number of Sequences: 1013581
Number of extensions: 303608
Number of successful extensions: 22823
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22591
Number of HSP's gapped (non-prelim): 232
length of query: 724
length of database: 908,940,872
effective HSP length: 20
effective length of query: 704
effective length of database: 888,669,252
effective search space: 625623153408
effective search space used: 625623153408
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)