BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067267.2.1
(893 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|BX820132.1|CNS0A8FZ Arabidopsis thaliana Full-length cD... 98 3e-018
gb|AV557699.1|AV557699 AV557699 Arabidopsis thaliana green ... 90 8e-016
gb|AY084858.1| Arabidopsis thaliana clone 119620 mRNA, comp... 90 8e-016
emb|BX819956.1|CNS0A8JM Arabidopsis thaliana Full-length cD... 90 8e-016
emb|BX820944.1|CNS0A8M5 Arabidopsis thaliana Full-length cD... 90 8e-016
emb|BX818964.1|CNS0A8TR Arabidopsis thaliana Full-length cD... 90 8e-016
ref|NM_129009.2| Arabidopsis thaliana ATP binding / ATPase/... 90 8e-016
ref|NM_201871.1| Arabidopsis thaliana ATP binding / ATPase/... 90 8e-016
gb|CK121475.1|CK121475 203a04.p1 AtM1 Arabidopsis thaliana ... 78 3e-012
emb|BX819896.1|CNS0A8GP Arabidopsis thaliana Full-length cD... 76 1e-011
emb|BX821969.1|CNS0A8BH Arabidopsis thaliana Full-length cD... 74 5e-011
gb|AV542767.1|AV542767 AV542767 Arabidopsis thaliana roots ... 64 4e-008
gb|AC004077.3| Arabidopsis thaliana chromosome 2 clone T31E... 56 1e-005
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 56 1e-005
gb|AY056097.1| Arabidopsis thaliana At1g64110/F22C12_22 mRN... 46 0.010
gb|AY062592.1| Arabidopsis thaliana similar to homeobox pro... 46 0.010
gb|BT006360.1| Arabidopsis thaliana At1g64110/F22C12_22 gen... 46 0.010
gb|AC007764.2|AC007764 Genomic sequence for Arabidopsis tha... 46 0.010
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 46 0.010
ref|NM_105085.2| Arabidopsis thaliana ATP binding / ATPase/... 46 0.010
ref|NM_179511.1| Arabidopsis thaliana ATP binding / ATPase/... 46 0.010
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 46 0.010
>emb|BX820132.1|CNS0A8FZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS78ZF05 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1315
Score = 97.6 bits (49), Expect = 3e-018
Identities = 300/383 (78%), Gaps = 3/383 (0%)
Strand = Plus / Plus
Query: 45 tttggtccacctggaacaggaaagacaatgctagctaaagctgtggctactgagtgcaaa 104
|||||||| ||||| || |||||||| ||||| || || ||||| ||||| ||||||||
Sbjct: 490 tttggtcctcctggtaccggaaagactatgcttgcgaaggctgttgctacagagtgcaat 549
Query: 105 acaacttttttcaatatttctgcctcgtcgattgtaagcaagtggcgcggtgactcggag 164
||||| || ||||| || || ||||| || |||| ||||||||| | ||||| || |||
Sbjct: 550 acaacattcttcaacatctcagcctcatctgttgttagcaagtggagaggtgattctgag 609
Query: 165 aaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatctactattttcctt 224
|| | | | ||| | ||||| || || |||||||||||||| || || || || |||
Sbjct: 610 aagttgataagagttctgttcgatctagctaggcatcatgcaccttcgacaatatttctt 669
Query: 225 gatgagattgatgctatcattagtcaacgtggtg---aagctcgtagtgaacatgaagct 281
|||||||| || || ||||| || |||||||||| ||| || |||||||||||||||
Sbjct: 670 gatgagatcgacgcgatcataagccaacgtggtggtgaaggccgcagtgaacatgaagct 729
Query: 282 agccggcgattgaaaactgagctattaatacagatggatgggttgactaagacagatgag 341
||| |||| | ||||| ||||| | || |||||||||||||| || || |||||
Sbjct: 730 agcaggcgtctcaaaaccgagctgctcattcagatggatgggttacagaaaacgaatgag 789
Query: 342 cttgtttttgttctagcagcaacaaatttaccatgggagttggatgcagcaatgctgcgt 401
|| || |||||| |||||||||||||| | || ||||| | |||||||| ||||| ||
Sbjct: 790 ctcgtatttgttttagcagcaacaaatctcccctgggaactagatgcagctatgctccgg 849
Query: 402 cggctggagaagcgtattcttgt 424
|| || ||||| || ||||||||
Sbjct: 850 cgtctagagaaacgaattcttgt 872
>gb|AV557699.1|AV557699 AV557699 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ076b01F 3', mRNA sequence
Length = 493
Score = 89.7 bits (45), Expect = 8e-016
Identities = 278/355 (78%), Gaps = 3/355 (0%)
Strand = Plus / Plus
Query: 45 tttggtccacctggaacaggaaagacaatgctagctaaagctgtggctactgagtgcaaa 104
|||||||| ||||| || |||||||| ||||| || || ||||| ||||| ||||||||
Sbjct: 139 tttggtcctcctggtaccggaaagactatgcttgcaaaggctgttgctacagagtgcaat 198
Query: 105 acaacttttttcaatatttctgcctcgtcgattgtaagcaagtggcgcggtgactcggag 164
||||| || ||||| || || ||||| || ||||| ||||| ||| | ||||| || |||
Sbjct: 199 acaacattcttcaacatctcagcctcatctattgttagcaaatggagaggtgattctgag 258
Query: 165 aaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatctactattttcctt 224
|| | | | ||| | ||||| || || |||||||||||||| || || || || |||
Sbjct: 259 aagttgataagagttctgttcgatctagctaggcatcatgcaccttcgacaatatttctt 318
Query: 225 gatgagattgatgctatcattagtcaac---gtggtgaagctcgtagtgaacatgaagct 281
|||||||| || || ||||| || |||| ||||||||| || |||||||||||||||
Sbjct: 319 gatgagatcgacgcgatcataagccaacgtggtggtgaaggccgcagtgaacatgaagct 378
Query: 282 agccggcgattgaaaactgagctattaatacagatggatgggttgactaagacagatgag 341
||| ||| | ||||| ||||| | || |||||||||||||| || || |||||
Sbjct: 379 agcacgcgtctcaaaaccgagctgctcattcagatggatgggttacagaaaacgaatgag 438
Query: 342 cttgtttttgttctagcagcaacaaatttaccatgggagttggatgcagcaatgc 396
|| || |||||| |||||||||||||| |||| ||||| | |||||||| ||||
Sbjct: 439 ctcgtatttgttttagcagcaacaaatctaccctgggaactagatgcagctatgc 493
>gb|AY084858.1| Arabidopsis thaliana clone 119620 mRNA, complete sequence
Length = 1361
Score = 89.7 bits (45), Expect = 8e-016
Identities = 299/383 (78%), Gaps = 3/383 (0%)
Strand = Plus / Plus
Query: 45 tttggtccacctggaacaggaaagacaatgctagctaaagctgtggctactgagtgcaaa 104
|||||||| ||||| || |||||||| ||||| || || ||||| ||||| ||||||||
Sbjct: 492 tttggtcctcctggtaccggaaagactatgcttgcaaaggctgttgctacagagtgcaat 551
Query: 105 acaacttttttcaatatttctgcctcgtcgattgtaagcaagtggcgcggtgactcggag 164
||||| || ||||| || || ||||| || |||| ||||| ||| | ||||| || |||
Sbjct: 552 acaacattcttcaacatctcagcctcatctgttgttagcaaatggagaggtgattctgag 611
Query: 165 aaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatctactattttcctt 224
|| | | | ||| | ||||| || || |||||||||||||| || || || || |||
Sbjct: 612 aagttgataagagttctgttcgatctagctaggcatcatgcaccttcgacaatatttctt 671
Query: 225 gatgagattgatgctatcattagtcaacgtggtg---aagctcgtagtgaacatgaagct 281
|||||||| || || ||||| || |||||||||| ||| || |||||||||||||||
Sbjct: 672 gatgagatcgacgcgatcataagccaacgtggtggtgaaggccgcagtgaacatgaagct 731
Query: 282 agccggcgattgaaaactgagctattaatacagatggatgggttgactaagacagatgag 341
||| |||| | ||||| ||||| | || |||||||||||||| || || |||||
Sbjct: 732 agcaggcgtctcaaaaccgagctgctcattcagatggatgggttacagaaaacgaatgag 791
Query: 342 cttgtttttgttctagcagcaacaaatttaccatgggagttggatgcagcaatgctgcgt 401
|| || |||||| |||||||||||||| | || ||||| | |||||||| ||||| ||
Sbjct: 792 ctcgtatttgttttagcagcaacaaatctcccctgggaactagatgcagctatgctccgg 851
Query: 402 cggctggagaagcgtattcttgt 424
|| || ||||| || ||||||||
Sbjct: 852 cgtctagagaaacgaattcttgt 874
>emb|BX819956.1|CNS0A8JM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS53ZF07 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1380
Score = 89.7 bits (45), Expect = 8e-016
Identities = 299/383 (78%), Gaps = 3/383 (0%)
Strand = Plus / Plus
Query: 45 tttggtccacctggaacaggaaagacaatgctagctaaagctgtggctactgagtgcaaa 104
|||||||| ||||| || |||||||| ||||| || || ||||| ||||| ||||||||
Sbjct: 517 tttggtcctcctggtaccggaaagactatgcttgcaaaggctgttgctacagagtgcaat 576
Query: 105 acaacttttttcaatatttctgcctcgtcgattgtaagcaagtggcgcggtgactcggag 164
||||| || ||||| || || ||||| || |||| ||||| ||| | ||||| || |||
Sbjct: 577 acaacattcttcaacatctcagcctcatctgttgttagcaaatggagaggtgattctgag 636
Query: 165 aaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatctactattttcctt 224
|| | | | ||| | ||||| || || |||||||||||||| || || || || |||
Sbjct: 637 aagttgataagagttctgttcgatctagctaggcatcatgcaccttcgacaatatttctt 696
Query: 225 gatgagattgatgctatcattagtcaacgtggtg---aagctcgtagtgaacatgaagct 281
|||||||| || || ||||| || |||||||||| ||| || |||||||||||||||
Sbjct: 697 gatgagatcgacgcgatcataagccaacgtggtggtgaaggccgcagtgaacatgaagct 756
Query: 282 agccggcgattgaaaactgagctattaatacagatggatgggttgactaagacagatgag 341
||| |||| | ||||| ||||| | || |||||||||||||| || || |||||
Sbjct: 757 agcaggcgtctcaaaaccgagctgctcattcagatggatgggttacagaaaacgaatgag 816
Query: 342 cttgtttttgttctagcagcaacaaatttaccatgggagttggatgcagcaatgctgcgt 401
|| || |||||| |||||||||||||| | || ||||| | |||||||| ||||| ||
Sbjct: 817 ctcgtatttgttttagcagcaacaaatctcccctgggaactagatgcagctatgctccgg 876
Query: 402 cggctggagaagcgtattcttgt 424
|| || ||||| || ||||||||
Sbjct: 877 cgtctagagaaacgaattcttgt 899
>emb|BX820944.1|CNS0A8M5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH83ZG08 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1284
Score = 89.7 bits (45), Expect = 8e-016
Identities = 299/383 (78%), Gaps = 3/383 (0%)
Strand = Plus / Plus
Query: 45 tttggtccacctggaacaggaaagacaatgctagctaaagctgtggctactgagtgcaaa 104
|||||||| ||||| || |||||||| ||||| || || ||||| ||||| ||||||||
Sbjct: 491 tttggtcctcctggtaccggaaagactatgcttgcaaaggctgttgctacagagtgcaat 550
Query: 105 acaacttttttcaatatttctgcctcgtcgattgtaagcaagtggcgcggtgactcggag 164
||||| || ||||| || || ||||| || |||| ||||| ||| | ||||| || |||
Sbjct: 551 acaacattcttcaacatctcagcctcatctgttgttagcaaatggagaggtgattctgag 610
Query: 165 aaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatctactattttcctt 224
|| | | | ||| | ||||| || || |||||||||||||| || || || || |||
Sbjct: 611 aagttgataagagttctgttcgatctagctaggcatcatgcaccttcgacaatatttctt 670
Query: 225 gatgagattgatgctatcattagtcaacgtggtg---aagctcgtagtgaacatgaagct 281
|||||||| || || ||||| || |||||||||| ||| || |||||||||||||||
Sbjct: 671 gatgagatcgacgcgatcataagccaacgtggtggtgaaggccgcagtgaacatgaagct 730
Query: 282 agccggcgattgaaaactgagctattaatacagatggatgggttgactaagacagatgag 341
||| |||| | ||||| ||||| | || |||||||||||||| || || |||||
Sbjct: 731 agcaggcgtctcaaaaccgagctgctcattcagatggatgggttacagaaaacgaatgag 790
Query: 342 cttgtttttgttctagcagcaacaaatttaccatgggagttggatgcagcaatgctgcgt 401
|| || |||||| |||||||||||||| | || ||||| | |||||||| ||||| ||
Sbjct: 791 ctcgtatttgttttagcagcaacaaatctcccctgggaactagatgcagctatgctccgg 850
Query: 402 cggctggagaagcgtattcttgt 424
|| || ||||| || ||||||||
Sbjct: 851 cgtctagagaaacgaattcttgt 873
>emb|BX818964.1|CNS0A8TR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB31ZF12 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1329
Score = 89.7 bits (45), Expect = 8e-016
Identities = 299/383 (78%), Gaps = 3/383 (0%)
Strand = Plus / Plus
Query: 45 tttggtccacctggaacaggaaagacaatgctagctaaagctgtggctactgagtgcaaa 104
|||||||| ||||| || |||||||| ||||| || || ||||| ||||| ||||||||
Sbjct: 510 tttggtcctcctggtaccggaaagactatgcttgcaaaggctgttgctacagagtgcaat 569
Query: 105 acaacttttttcaatatttctgcctcgtcgattgtaagcaagtggcgcggtgactcggag 164
||||| || ||||| || || ||||| || |||| ||||| ||| | ||||| || |||
Sbjct: 570 acaacattcttcaacatctcagcctcatctgttgttagcaaatggagaggtgattctgag 629
Query: 165 aaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatctactattttcctt 224
|| | | | ||| | ||||| || || |||||||||||||| || || || || |||
Sbjct: 630 aagttgataagagttctgttcgatctagctaggcatcatgcaccttcgacaatatttctt 689
Query: 225 gatgagattgatgctatcattagtcaacgtggtg---aagctcgtagtgaacatgaagct 281
|||||||| || || ||||| || |||||||||| ||| || |||||||||||||||
Sbjct: 690 gatgagatcgacgcgatcataagccaacgtggtggtgaaggccgcagtgaacatgaagct 749
Query: 282 agccggcgattgaaaactgagctattaatacagatggatgggttgactaagacagatgag 341
||| |||| | ||||| ||||| | || |||||||||||||| || || |||||
Sbjct: 750 agcaggcgtctcaaaaccgagctgctcattcagatggatgggttacagaaaacgaatgag 809
Query: 342 cttgtttttgttctagcagcaacaaatttaccatgggagttggatgcagcaatgctgcgt 401
|| || |||||| |||||||||||||| | || ||||| | |||||||| ||||| ||
Sbjct: 810 ctcgtatttgttttagcagcaacaaatctcccctgggaactagatgcagctatgctccgg 869
Query: 402 cggctggagaagcgtattcttgt 424
|| || ||||| || ||||||||
Sbjct: 870 cgtctagagaaacgaattcttgt 892
>ref|NM_129009.2| Arabidopsis thaliana ATP binding / ATPase/
nucleoside-triphosphatase/ nucleotide binding AT2G34560
transcript variant AT2G34560.1 mRNA, complete cds
Length = 1408
Score = 89.7 bits (45), Expect = 8e-016
Identities = 299/383 (78%), Gaps = 3/383 (0%)
Strand = Plus / Plus
Query: 45 tttggtccacctggaacaggaaagacaatgctagctaaagctgtggctactgagtgcaaa 104
|||||||| ||||| || |||||||| ||||| || || ||||| ||||| ||||||||
Sbjct: 527 tttggtcctcctggtaccggaaagactatgcttgcaaaggctgttgctacagagtgcaat 586
Query: 105 acaacttttttcaatatttctgcctcgtcgattgtaagcaagtggcgcggtgactcggag 164
||||| || ||||| || || ||||| || |||| ||||| ||| | ||||| || |||
Sbjct: 587 acaacattcttcaacatctcagcctcatctgttgttagcaaatggagaggtgattctgag 646
Query: 165 aaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatctactattttcctt 224
|| | | | ||| | ||||| || || |||||||||||||| || || || || |||
Sbjct: 647 aagttgataagagttctgttcgatctagctaggcatcatgcaccttcgacaatatttctt 706
Query: 225 gatgagattgatgctatcattagtcaacgtggtg---aagctcgtagtgaacatgaagct 281
|||||||| || || ||||| || |||||||||| ||| || |||||||||||||||
Sbjct: 707 gatgagatcgacgcgatcataagccaacgtggtggtgaaggccgcagtgaacatgaagct 766
Query: 282 agccggcgattgaaaactgagctattaatacagatggatgggttgactaagacagatgag 341
||| |||| | ||||| ||||| | || |||||||||||||| || || |||||
Sbjct: 767 agcaggcgtctcaaaaccgagctgctcattcagatggatgggttacagaaaacgaatgag 826
Query: 342 cttgtttttgttctagcagcaacaaatttaccatgggagttggatgcagcaatgctgcgt 401
|| || |||||| |||||||||||||| | || ||||| | |||||||| ||||| ||
Sbjct: 827 ctcgtatttgttttagcagcaacaaatctcccctgggaactagatgcagctatgctccgg 886
Query: 402 cggctggagaagcgtattcttgt 424
|| || ||||| || ||||||||
Sbjct: 887 cgtctagagaaacgaattcttgt 909
>ref|NM_201871.1| Arabidopsis thaliana ATP binding / ATPase/
nucleoside-triphosphatase/ nucleotide binding AT2G34560
transcript variant AT2G34560.2 mRNA, complete cds
Length = 1400
Score = 89.7 bits (45), Expect = 8e-016
Identities = 299/383 (78%), Gaps = 3/383 (0%)
Strand = Plus / Plus
Query: 45 tttggtccacctggaacaggaaagacaatgctagctaaagctgtggctactgagtgcaaa 104
|||||||| ||||| || |||||||| ||||| || || ||||| ||||| ||||||||
Sbjct: 519 tttggtcctcctggtaccggaaagactatgcttgcaaaggctgttgctacagagtgcaat 578
Query: 105 acaacttttttcaatatttctgcctcgtcgattgtaagcaagtggcgcggtgactcggag 164
||||| || ||||| || || ||||| || |||| ||||| ||| | ||||| || |||
Sbjct: 579 acaacattcttcaacatctcagcctcatctgttgttagcaaatggagaggtgattctgag 638
Query: 165 aaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatctactattttcctt 224
|| | | | ||| | ||||| || || |||||||||||||| || || || || |||
Sbjct: 639 aagttgataagagttctgttcgatctagctaggcatcatgcaccttcgacaatatttctt 698
Query: 225 gatgagattgatgctatcattagtcaacgtggtg---aagctcgtagtgaacatgaagct 281
|||||||| || || ||||| || |||||||||| ||| || |||||||||||||||
Sbjct: 699 gatgagatcgacgcgatcataagccaacgtggtggtgaaggccgcagtgaacatgaagct 758
Query: 282 agccggcgattgaaaactgagctattaatacagatggatgggttgactaagacagatgag 341
||| |||| | ||||| ||||| | || |||||||||||||| || || |||||
Sbjct: 759 agcaggcgtctcaaaaccgagctgctcattcagatggatgggttacagaaaacgaatgag 818
Query: 342 cttgtttttgttctagcagcaacaaatttaccatgggagttggatgcagcaatgctgcgt 401
|| || |||||| |||||||||||||| | || ||||| | |||||||| ||||| ||
Sbjct: 819 ctcgtatttgttttagcagcaacaaatctcccctgggaactagatgcagctatgctccgg 878
Query: 402 cggctggagaagcgtattcttgt 424
|| || ||||| || ||||||||
Sbjct: 879 cgtctagagaaacgaattcttgt 901
>gb|CK121475.1|CK121475 203a04.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011A04203
5-PRIME, mRNA sequence
Length = 653
Score = 77.8 bits (39), Expect = 3e-012
Identities = 185/233 (79%), Gaps = 3/233 (1%)
Strand = Plus / Plus
Query: 195 aggcatcatgcaccatctactattttccttgatgagattgatgctatcattagtcaacgt 254
|||||||||||||| || || || || ||||||||||| || || ||||| || ||||||
Sbjct: 96 aggcatcatgcaccttcgacaatatttcttgatgagatcgacgcgatcataagccaacgt 155
Query: 255 ggtg---aagctcgtagtgaacatgaagctagccggcgattgaaaactgagctattaata 311
|||| ||| || |||||||||||||||||| |||| | ||||| ||||| | ||
Sbjct: 156 ggtggtgaaggccgcagtgaacatgaagctagcaggcgtctcaaaaccgagctgctcatt 215
Query: 312 cagatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaattta 371
|||||||||||||| || || ||||||| || |||||| |||||||||||||| |
Sbjct: 216 cagatggatgggttacagaaaacgaatgagctcgtatttgttttagcagcaacaaatctc 275
Query: 372 ccatgggagttggatgcagcaatgctgcgtcggctggagaagcgtattcttgt 424
|| ||||| | |||||||| ||||| || || || ||||| || ||||||||
Sbjct: 276 ccctgggaactagatgcagctatgctccggcgtctagagaaacgaattcttgt 328
>emb|BX819896.1|CNS0A8GP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS44ZF08 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1405
Score = 75.8 bits (38), Expect = 1e-011
Identities = 277/356 (77%), Gaps = 3/356 (0%)
Strand = Plus / Plus
Query: 45 tttggtccacctggaacaggaaagacaatgctagctaaagctgtggctactgagtgcaaa 104
|||||||| ||||| || |||||||| ||||| || || ||||| ||||| ||||||||
Sbjct: 493 tttggtcctcctggtaccggaaagactatgcttgcgaaggctgttgctacagagtgcaat 552
Query: 105 acaacttttttcaatatttctgcctcgtcgattgtaagcaagtggcgcggtgactcggag 164
||||| || ||||| || || ||||| || |||| ||||| ||| | ||||| || |||
Sbjct: 553 acaacattcttcaacatctcagcctcatctgttgttagcaaatggagaggtgattctgag 612
Query: 165 aaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatctactattttcctt 224
|| | | | ||| | ||||| || || |||||||||||||| || || || || |||
Sbjct: 613 aagttgataagagttctgttcgatctagctaggcatcatgcaccttcgacaatatttctt 672
Query: 225 gatgagattgatgctatcattagtcaac---gtggtgaagctcgtagtgaacatgaagct 281
|||||||| || || ||||| || |||| ||||||||| || |||||||||||||||
Sbjct: 673 gatgagatcgacgcgatcataagccaacgtggtggtgaaggccgcagtgaacatgaagct 732
Query: 282 agccggcgattgaaaactgagctattaatacagatggatgggttgactaagacagatgag 341
| | |||| | ||||| ||||| | || |||||||||||||| || || |||||
Sbjct: 733 aacaggcgtctcaaaaccgagctgctcattcagatggatgggttacagaaaacgaatgag 792
Query: 342 cttgtttttgttctagcagcaacaaatttaccatgggagttggatgcagcaatgct 397
|| || |||||| |||||||||||||| | || ||||| | |||||||| |||||
Sbjct: 793 ctcgtatttgttttagcagcaacaaatctcccctgggaactagatgcagctatgct 848
>emb|BX821969.1|CNS0A8BH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL89ZC06 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1269
Score = 73.8 bits (37), Expect = 5e-011
Identities = 255/327 (77%), Gaps = 3/327 (0%)
Strand = Plus / Plus
Query: 45 tttggtccacctggaacaggaaagacaatgctagctaaagctgtggctactgagtgcaaa 104
|||||||| ||||| || |||||||| ||||| || || ||||| ||||| ||||||||
Sbjct: 485 tttggtcctcctggtaccggaaagactatgcttgcaaaggctgttgctacagagtgcaat 544
Query: 105 acaacttttttcaatatttctgcctcgtcgattgtaagcaagtggcgcggtgactcggag 164
||||| || ||||| || || ||||| || |||| ||||| ||| | ||||| || |||
Sbjct: 545 acaacattcttcaacatctcagcctcatctgttgttagcaaatggagaggtgattctgag 604
Query: 165 aaactagtgaaagtgttattcgaacttgcaaggcatcatgcaccatctactattttcctt 224
|| | | | ||| | ||||| || || |||||||||||||| || || || || |||
Sbjct: 605 aagttgataagagttctgttcgatctagctaggcatcatgcaccttcgacaatatttctt 664
Query: 225 gatgagattgatgctatcattagtcaacgtggtg---aagctcgtagtgaacatgaagct 281
|||||||| || || ||||| || |||||||||| ||| || |||||||||||||||
Sbjct: 665 gatgagatcgacgcgatcataagccaacgtggtggtgaaggccgcagtgaacatgaagct 724
Query: 282 agccggcgattgaaaactgagctattaatacagatggatgggttgactaagacagatgag 341
||| |||| | ||||| ||||| | || ||||||||||||| || || |||||
Sbjct: 725 agcaggcgtctcaaaaccgagctgctcattaagatggatgggttacagaaaacgaatgag 784
Query: 342 cttgtttttgttctagcagcaacaaat 368
|| || |||||| ||||||||||||||
Sbjct: 785 ctcgtatttgttttagcagcaacaaat 811
>gb|AV542767.1|AV542767 AV542767 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ19a04F 3', mRNA sequence
Length = 625
Score = 63.9 bits (32), Expect = 4e-008
Identities = 137/172 (79%)
Strand = Plus / Minus
Query: 253 gtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaactgagctattaatac 312
||||||||| || |||||||||||||||||| |||| | ||||| ||||| | || |
Sbjct: 597 gtggtgaaggccgcagtgaacatgaagctagcaggcgtctcaaaaccgagctgctcattc 538
Query: 313 agatggatgggttgactaagacagatgagcttgtttttgttctagcagcaacaaatttac 372
||||||||||||| || || ||||||| || |||||| |||||||||||||| | |
Sbjct: 537 agatggatgggttacagaaaacgaatgagctcgtatttgttttagcagcaacaaatctcc 478
Query: 373 catgggagttggatgcagcaatgctgcgtcggctggagaagcgtattcttgt 424
| ||||| | |||||||| ||||| || || || ||||| || ||||||||
Sbjct: 477 cctgggaactagatgcagctatgctccggcgtctagagaaacgaattcttgt 426
>gb|AC004077.3| Arabidopsis thaliana chromosome 2 clone T31E10 map ve016, complete
sequence
Length = 93060
Score = 56.0 bits (28), Expect = 1e-005
Identities = 81/98 (82%), Gaps = 3/98 (3%)
Strand = Plus / Minus
Query: 195 aggcatcatgcaccatctactattttccttgatgagattgatgctatcattagtcaac-- 252
|||||||||||||| || || || || ||||||||||| || || ||||| || ||||
Sbjct: 41859 aggcatcatgcaccttcgacaatatttcttgatgagatcgacgcgatcataagccaacgt 41800
Query: 253 -gtggtgaagctcgtagtgaacatgaagctagccggcg 289
||||||||| || |||||||||||||||||| ||||
Sbjct: 41799 ggtggtgaaggccgcagtgaacatgaagctagcaggcg 41762
Score = 42.1 bits (21), Expect = 0.16
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 337 atgagcttgtttttgttctagcagcaacaaatttaccatgggagttggatgcagcaatgc 396
||||||| || |||||| |||||||||||||| | || ||||| | |||||||| ||||
Sbjct: 41629 atgagctcgtatttgttttagcagcaacaaatctcccctgggaactagatgcagctatgc 41570
Query: 397 t 397
|
Sbjct: 41569 t 41569
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 56.0 bits (28), Expect = 1e-005
Identities = 81/98 (82%), Gaps = 3/98 (3%)
Strand = Plus / Plus
Query: 195 aggcatcatgcaccatctactattttccttgatgagattgatgctatcattagtcaac-- 252
|||||||||||||| || || || || ||||||||||| || || ||||| || ||||
Sbjct: 14568935 aggcatcatgcaccttcgacaatatttcttgatgagatcgacgcgatcataagccaacgt 14568994
Query: 253 -gtggtgaagctcgtagtgaacatgaagctagccggcg 289
||||||||| || |||||||||||||||||| ||||
Sbjct: 14568995 ggtggtgaaggccgcagtgaacatgaagctagcaggcg 14569032
Score = 42.1 bits (21), Expect = 0.16
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 337 atgagcttgtttttgttctagcagcaacaaatttaccatgggagttggatgcagcaatgc 396
||||||| || |||||| |||||||||||||| | || ||||| | |||||||| ||||
Sbjct: 14569165 atgagctcgtatttgttttagcagcaacaaatctcccctgggaactagatgcagctatgc 14569224
Query: 397 t 397
|
Sbjct: 14569225 t 14569225
>gb|AY056097.1| Arabidopsis thaliana At1g64110/F22C12_22 mRNA, complete cds
Length = 2828
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 39 ttactgtttggtccacctggaacaggaaagacaatgctagctaaagc 85
||||| || |||||||| || ||||| || |||||||||||||||||
Sbjct: 1885 ttactcttcggtccaccgggtacaggtaaaacaatgctagctaaagc 1931
>gb|AY062592.1| Arabidopsis thaliana similar to homeobox protein (At1g64110;
F22C12.12) mRNA, partial cds
Length = 2484
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 39 ttactgtttggtccacctggaacaggaaagacaatgctagctaaagc 85
||||| || |||||||| || ||||| || |||||||||||||||||
Sbjct: 1903 ttactcttcggtccaccgggtacaggtaaaacaatgctagctaaagc 1949
>gb|BT006360.1| Arabidopsis thaliana At1g64110/F22C12_22 gene, complete cds
Length = 2475
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 39 ttactgtttggtccacctggaacaggaaagacaatgctagctaaagc 85
||||| || |||||||| || ||||| || |||||||||||||||||
Sbjct: 1660 ttactcttcggtccaccgggtacaggtaaaacaatgctagctaaagc 1706
>gb|AC007764.2|AC007764 Genomic sequence for Arabidopsis thaliana BAC F22C12 from chromosome I,
complete sequence
Length = 111222
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 39 ttactgtttggtccacctggaacaggaaagacaatgctagctaaagc 85
||||| || |||||||| || ||||| || |||||||||||||||||
Sbjct: 52780 ttactcttcggtccaccgggtacaggtaaaacaatgctagctaaagc 52826
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 39 ttactgtttggtccacctggaacaggaaagacaatgctagctaaagc 85
||||| || |||||||| || ||||| || |||||||||||||||||
Sbjct: 8039429 ttactcttcggtccaccgggtacaggtaaaacaatgctagctaaagc 8039383
>ref|NM_105085.2| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/
nucleotide binding AT1G64110 transcript variant
AT1G64110.1 mRNA, complete cds
Length = 2868
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 39 ttactgtttggtccacctggaacaggaaagacaatgctagctaaagc 85
||||| || |||||||| || ||||| || |||||||||||||||||
Sbjct: 1885 ttactcttcggtccaccgggtacaggtaaaacaatgctagctaaagc 1931
>ref|NM_179511.1| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/
nucleotide binding AT1G64110 transcript variant
AT1G64110.2 mRNA, complete cds
Length = 2886
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 39 ttactgtttggtccacctggaacaggaaagacaatgctagctaaagc 85
||||| || |||||||| || ||||| || |||||||||||||||||
Sbjct: 1903 ttactcttcggtccaccgggtacaggtaaaacaatgctagctaaagc 1949
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 39 ttactgtttggtccacctggaacaggaaagacaatgctagctaaagc 85
||||| || |||||||| || ||||| || |||||||||||||||||
Sbjct: 23801777 ttactcttcggtccaccgggtacaggtaaaacaatgctagctaaagc 23801731
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 468,557
Number of Sequences: 1013581
Number of extensions: 468557
Number of successful extensions: 35273
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34608
Number of HSP's gapped (non-prelim): 651
length of query: 893
length of database: 908,940,872
effective HSP length: 20
effective length of query: 873
effective length of database: 888,669,252
effective search space: 775808256996
effective search space used: 775808256996
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)