BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067043.2.1
(834 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX839097.1|BX839097 BX839097 Arabidopsis thaliana Adult ... 46 0.010
gb|BX840398.1|BX840398 BX840398 Arabidopsis thaliana Hormon... 46 0.010
emb|AX464574.1| Sequence 2 from Patent WO0202798 46 0.010
emb|AX464577.1| Sequence 5 from Patent WO0202798 46 0.010
emb|AX464580.1| Sequence 8 from Patent WO0202798 46 0.010
emb|AX506042.1| Sequence 737 from Patent WO0216655 46 0.010
gb|AY089156.1| Arabidopsis thaliana clone 39613 mRNA, compl... 46 0.010
emb|BX822129.1|CNS0A727 Arabidopsis thaliana Full-length cD... 46 0.010
dbj|AB026657.1| Arabidopsis thaliana genomic DNA, chromosom... 46 0.010
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 46 0.010
emb|AJ242647.1|ATH242647 Arabidopsis thaliana CM1 gene for ... 46 0.010
emb|Z26519.1|ATCHMUT A.thaliana mRNA for chorismate mutase 46 0.010
ref|NM_113844.3| Arabidopsis thaliana CM1; chorismate mutas... 46 0.010
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 46 0.010
gb|CL510959.1|CL510959 SAIL_83_H10.v1 SAIL Collection Arabi... 42 0.15
gb|AW004329.1|AW004329 701956468 A. thaliana, mixed source ... 42 0.15
gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21... 42 0.15
emb|BX816165.1|CNS0ABMT Arabidopsis thaliana Full-length cD... 42 0.15
gb|BT022048.1| Arabidopsis thaliana At1g49520 gene, complet... 42 0.15
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.15
ref|NM_103840.2| Arabidopsis thaliana unknown protein AT1G4... 42 0.15
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.15
>gb|BX839097.1|BX839097 BX839097 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS95ZC11 5PRIM, mRNA
sequence
Length = 1025
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 363 ctgatggatatgctgacattcaaggctgtggaaga 397
||||||||||||||||||||| | ||||||||||
Sbjct: 885 ctgatggatatgctgacattcccgactgtggaaga 919
>gb|BX840398.1|BX840398 BX840398 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH61ZC01 5PRIM,
mRNA sequence
Length = 977
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 363 ctgatggatatgctgacattcaaggctgtggaaga 397
||||||||||||||||||||| | ||||||||||
Sbjct: 829 ctgatggatatgctgacattcccgactgtggaaga 863
>emb|AX464574.1| Sequence 2 from Patent WO0202798
Length = 1207
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 363 ctgatggatatgctgacattcaaggctgtggaaga 397
||||||||||||||||||||| | ||||||||||
Sbjct: 772 ctgatggatatgctgacattcccgactgtggaaga 806
>emb|AX464577.1| Sequence 5 from Patent WO0202798
Length = 5099
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 363 ctgatggatatgctgacattcaaggctgtggaaga 397
||||||||||||||||||||| | ||||||||||
Sbjct: 4404 ctgatggatatgctgacattcccgactgtggaaga 4438
>emb|AX464580.1| Sequence 8 from Patent WO0202798
Length = 1207
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 363 ctgatggatatgctgacattcaaggctgtggaaga 397
||||||||||||||||||||| | ||||||||||
Sbjct: 436 ctgatggatatgctgacattcccgactgtggaaga 402
>emb|AX506042.1| Sequence 737 from Patent WO0216655
Length = 1005
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 363 ctgatggatatgctgacattcaaggctgtggaaga 397
||||||||||||||||||||| | ||||||||||
Sbjct: 760 ctgatggatatgctgacattcccgactgtggaaga 794
>gb|AY089156.1| Arabidopsis thaliana clone 39613 mRNA, complete sequence
Length = 1274
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 363 ctgatggatatgctgacattcaaggctgtggaaga 397
||||||||||||||||||||| | ||||||||||
Sbjct: 846 ctgatggatatgctgacattcccgactgtggaaga 880
>emb|BX822129.1|CNS0A727 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB15ZB12 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1329
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 363 ctgatggatatgctgacattcaaggctgtggaaga 397
||||||||||||||||||||| | ||||||||||
Sbjct: 936 ctgatggatatgctgacattcccgactgtggaaga 970
>dbj|AB026657.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXO21
Length = 77401
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 363 ctgatggatatgctgacattcaaggctgtggaaga 397
||||||||||||||||||||| | ||||||||||
Sbjct: 10474 ctgatggatatgctgacattcccgactgtggaaga 10440
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 363 ctgatggatatgctgacattcaaggctgtggaaga 397
||||||||||||||||||||| | ||||||||||
Sbjct: 11087011 ctgatggatatgctgacattcccgactgtggaaga 11086977
>emb|AJ242647.1|ATH242647 Arabidopsis thaliana CM1 gene for plastidic chorismate mutase, exons
1-6
Length = 5099
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 363 ctgatggatatgctgacattcaaggctgtggaaga 397
||||||||||||||||||||| | ||||||||||
Sbjct: 4404 ctgatggatatgctgacattcccgactgtggaaga 4438
>emb|Z26519.1|ATCHMUT A.thaliana mRNA for chorismate mutase
Length = 1207
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 363 ctgatggatatgctgacattcaaggctgtggaaga 397
||||||||||||||||||||| | ||||||||||
Sbjct: 772 ctgatggatatgctgacattcccgactgtggaaga 806
>ref|NM_113844.3| Arabidopsis thaliana CM1; chorismate mutase AT3G29200 (CM1) mRNA,
complete cds
Length = 1370
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 363 ctgatggatatgctgacattcaaggctgtggaaga 397
||||||||||||||||||||| | ||||||||||
Sbjct: 936 ctgatggatatgctgacattcccgactgtggaaga 970
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 46.1 bits (23), Expect = 0.010
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 363 ctgatggatatgctgacattcaaggctgtggaaga 397
||||||||||||||||||||| | ||||||||||
Sbjct: 11166064 ctgatggatatgctgacattcccgactgtggaaga 11166030
>gb|CL510959.1|CL510959 SAIL_83_H10.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_83_H10.v1, DNA sequence
Length = 934
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 405 aagaagagagtagagaagaag 425
|||||||||||||||||||||
Sbjct: 74 aagaagagagtagagaagaag 94
>gb|AW004329.1|AW004329 701956468 A. thaliana, mixed source Arabidopsis thaliana cDNA clone
701956468, mRNA sequence
Length = 500
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 363 ctgatggatatgctgacattc 383
|||||||||||||||||||||
Sbjct: 370 ctgatggatatgctgacattc 350
>gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete
sequence
Length = 125021
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 405 aagaagagagtagagaagaag 425
|||||||||||||||||||||
Sbjct: 13047 aagaagagagtagagaagaag 13027
>emb|BX816165.1|CNS0ABMT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH31ZE10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1338
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 405 aagaagagagtagagaagaag 425
|||||||||||||||||||||
Sbjct: 687 aagaagagagtagagaagaag 707
>gb|BT022048.1| Arabidopsis thaliana At1g49520 gene, complete cds
Length = 1153
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 405 aagaagagagtagagaagaag 425
|||||||||||||||||||||
Sbjct: 658 aagaagagagtagagaagaag 678
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 405 aagaagagagtagagaagaag 425
|||||||||||||||||||||
Sbjct: 2690124 aagaagagagtagagaagaag 2690144
>ref|NM_103840.2| Arabidopsis thaliana unknown protein AT1G49520 mRNA, complete cds
Length = 1337
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 405 aagaagagagtagagaagaag 425
|||||||||||||||||||||
Sbjct: 687 aagaagagagtagagaagaag 707
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 405 aagaagagagtagagaagaag 425
|||||||||||||||||||||
Sbjct: 18334530 aagaagagagtagagaagaag 18334550
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 449,885
Number of Sequences: 1013581
Number of extensions: 449885
Number of successful extensions: 34998
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34144
Number of HSP's gapped (non-prelim): 854
length of query: 834
length of database: 908,940,872
effective HSP length: 20
effective length of query: 814
effective length of database: 888,669,252
effective search space: 723376771128
effective search space used: 723376771128
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)