BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3042568.2.1
(1174 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY099734.1| Arabidopsis thaliana putative glucan synthas... 119 1e-024
gb|BT000346.1| Arabidopsis thaliana putative glucan synthas... 119 1e-024
emb|BX825904.1|CNS0A6G3 Arabidopsis thaliana Full-length cD... 119 1e-024
dbj|AK221151.1| Arabidopsis thaliana mRNA for putative gluc... 119 1e-024
ref|NM_111596.1| Arabidopsis thaliana ATGSL10 (GLUCAN SYNTH... 119 1e-024
gb|AY085106.1| Arabidopsis thaliana clone 12977 mRNA, compl... 111 3e-022
gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome II... 103 7e-020
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 103 7e-020
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 103 7e-020
gb|BP832867.1|BP832867 BP832867 RAFL19 Arabidopsis thaliana... 98 4e-018
emb|BX824879.1|CNS0A7RK Arabidopsis thaliana Full-length cD... 84 6e-014
gb|AQ963066.1|AQ963066 LERGJ26TF LERG Arabidopsis thaliana ... 56 1e-005
gb|AQ963067.1|AQ963067 LERGJ26TR LERG Arabidopsis thaliana ... 56 1e-005
emb|AX651854.1| Sequence 720 from Patent WO03000898 56 1e-005
emb|CR379747.1| Arabidopsis thaliana transposon insertion S... 56 1e-005
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 56 1e-005
emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome... 56 1e-005
ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTH... 56 1e-005
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 56 1e-005
gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone poo... 52 2e-004
emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequenc... 50 9e-004
emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequenc... 50 9e-004
gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Rev... 50 9e-004
gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Rev... 50 9e-004
gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Rev... 50 9e-004
gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudo... 50 9e-004
gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudo... 50 9e-004
gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasi... 50 9e-004
gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasi... 50 9e-004
gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasit... 50 9e-004
gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone poo... 50 9e-004
gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone poo... 50 9e-004
gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasi... 50 9e-004
gb|AC006436.5| Arabidopsis thaliana chromosome 2 clone F13J... 50 9e-004
gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F... 50 9e-004
tpg|BK001470.1| TPA: Arabidopsis thaliana callose synthase ... 50 9e-004
gb|AY337762.1| Arabidopsis thaliana LAP1 (At2g13680) mRNA, ... 50 9e-004
ref|NM_179622.2| Arabidopsis thaliana 1,3-beta-glucan synth... 50 9e-004
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 50 9e-004
gb|CB074186.1|CB074186 EST02508 Early Ovule Development For... 48 0.003
gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasi... 48 0.003
gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasi... 48 0.003
gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG... 48 0.003
emb|AX505609.1| Sequence 304 from Patent WO0216655 48 0.003
emb|AX507774.1| Sequence 2469 from Patent WO0216655 48 0.003
gb|F14233.1|F14233 ATTS5155 Gif-SiliqueB Arabidopsis thalia... 46 0.014
gb|CB185793.2|CB185793 EST00720 Arabidopsis avirulent Pseud... 46 0.014
gb|CB185942.1|CB185942 EST01133 Arabidopsis virulent Pseudo... 46 0.014
gb|CB185943.1|CB185943 EST01134 Arabidopsis virulent Pseudo... 46 0.014
gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasi... 46 0.014
gb|U58918.1|ATU58918 Arabidopsis thaliana MEK kinase (MAP3K... 46 0.014
emb|AJ010090.1|ATH010090 Arabidopsis thaliana mRNA for MAP3... 46 0.014
emb|CS137270.1| Sequence 241 from Patent WO2005047516 46 0.014
ref|NM_179940.1| Arabidopsis thaliana ATGSL08 (GLUCAN SYNTH... 46 0.014
emb|AJ595464.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.054
emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.054
gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone For... 44 0.054
gb|CF772990.1|CF772990 AG_FSL_10G03 Arabidopsis ag-1 35S:AG... 44 0.054
emb|AJ272202.1|ATH272202 Arabidopsis thaliana mRNA for mito... 44 0.054
emb|AJ293797.1|ATH293797 Arabidopsis thaliana mRNA for SC35... 44 0.054
gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseud... 42 0.21
gb|BP642474.1|BP642474 BP642474 RAFL19 Arabidopsis thaliana... 42 0.21
>gb|AY099734.1| Arabidopsis thaliana putative glucan synthase (At3g07160) mRNA,
complete cds
Length = 1780
Score = 119 bits (60), Expect = 1e-024
Identities = 132/156 (84%)
Strand = Plus / Minus
Query: 830 cagttcttcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcg 889
|||||||||||||||||| |||||||||||||| ||||||| |||||||| |||||||
Sbjct: 991 cagttcttcttcccaccatgcttcccagctttcagctcctttcacaccaattccacctct 932
Query: 890 ataaaacagccaatttgtccagtctctgaaatcctcaacaatcttctgccattcaaatcc 949
||||| |||||||||||||| ||| |||| ||||| || | |||||||| ||||||||
Sbjct: 931 gtaaaagagccaatttgtccattctttgaagtcctccacgactttctgccactcaaatcc 872
Query: 950 agatgggttaaataaatagggagcaaaaagccaaga 985
| ||||| |||| || |||||||| ||||||||
Sbjct: 871 ggcagggttgaataggtacggagcaaacagccaaga 836
>gb|BT000346.1| Arabidopsis thaliana putative glucan synthase (At3g07160) mRNA,
complete cds
Length = 1404
Score = 119 bits (60), Expect = 1e-024
Identities = 132/156 (84%)
Strand = Plus / Minus
Query: 830 cagttcttcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcg 889
|||||||||||||||||| |||||||||||||| ||||||| |||||||| |||||||
Sbjct: 720 cagttcttcttcccaccatgcttcccagctttcagctcctttcacaccaattccacctct 661
Query: 890 ataaaacagccaatttgtccagtctctgaaatcctcaacaatcttctgccattcaaatcc 949
||||| |||||||||||||| ||| |||| ||||| || | |||||||| ||||||||
Sbjct: 660 gtaaaagagccaatttgtccattctttgaagtcctccacgactttctgccactcaaatcc 601
Query: 950 agatgggttaaataaatagggagcaaaaagccaaga 985
| ||||| |||| || |||||||| ||||||||
Sbjct: 600 ggcagggttgaataggtacggagcaaacagccaaga 565
>emb|BX825904.1|CNS0A6G3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL71ZB05 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1053
Score = 119 bits (60), Expect = 1e-024
Identities = 132/156 (84%)
Strand = Plus / Minus
Query: 830 cagttcttcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcg 889
|||||||||||||||||| |||||||||||||| ||||||| |||||||| |||||||
Sbjct: 293 cagttcttcttcccaccatgcttcccagctttcagctcctttcacaccaattccacctct 234
Query: 890 ataaaacagccaatttgtccagtctctgaaatcctcaacaatcttctgccattcaaatcc 949
||||| |||||||||||||| ||| |||| ||||| || | |||||||| ||||||||
Sbjct: 233 gtaaaagagccaatttgtccattctttgaagtcctccacgactttctgccactcaaatcc 174
Query: 950 agatgggttaaataaatagggagcaaaaagccaaga 985
| ||||| |||| || |||||||| ||||||||
Sbjct: 173 ggcagggttgaataggtacggagcaaacagccaaga 138
>dbj|AK221151.1| Arabidopsis thaliana mRNA for putative glucan synthase, complete
cds, clone: RAFL22-94-A16
Length = 1088
Score = 119 bits (60), Expect = 1e-024
Identities = 132/156 (84%)
Strand = Plus / Minus
Query: 830 cagttcttcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcg 889
|||||||||||||||||| |||||||||||||| ||||||| |||||||| |||||||
Sbjct: 335 cagttcttcttcccaccatgcttcccagctttcagctcctttcacaccaattccacctct 276
Query: 890 ataaaacagccaatttgtccagtctctgaaatcctcaacaatcttctgccattcaaatcc 949
||||| |||||||||||||| ||| |||| ||||| || | |||||||| ||||||||
Sbjct: 275 gtaaaagagccaatttgtccattctttgaagtcctccacgactttctgccactcaaatcc 216
Query: 950 agatgggttaaataaatagggagcaaaaagccaaga 985
| ||||| |||| || |||||||| ||||||||
Sbjct: 215 ggcagggttgaataggtacggagcaaacagccaaga 180
>ref|NM_111596.1| Arabidopsis thaliana ATGSL10 (GLUCAN SYNTHASE-LIKE 10);
1,3-beta-glucan synthase AT3G07160 (ATGSL10) mRNA,
complete cds
Length = 5981
Score = 119 bits (60), Expect = 1e-024
Identities = 132/156 (84%)
Strand = Plus / Minus
Query: 830 cagttcttcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcg 889
|||||||||||||||||| |||||||||||||| ||||||| |||||||| |||||||
Sbjct: 5205 cagttcttcttcccaccatgcttcccagctttcagctcctttcacaccaattccacctct 5146
Query: 890 ataaaacagccaatttgtccagtctctgaaatcctcaacaatcttctgccattcaaatcc 949
||||| |||||||||||||| ||| |||| ||||| || | |||||||| ||||||||
Sbjct: 5145 gtaaaagagccaatttgtccattctttgaagtcctccacgactttctgccactcaaatcc 5086
Query: 950 agatgggttaaataaatagggagcaaaaagccaaga 985
| ||||| |||| || |||||||| ||||||||
Sbjct: 5085 ggcagggttgaataggtacggagcaaacagccaaga 5050
>gb|AY085106.1| Arabidopsis thaliana clone 12977 mRNA, complete sequence
Length = 1267
Score = 111 bits (56), Expect = 3e-022
Identities = 130/156 (83%)
Strand = Plus / Minus
Query: 830 cagttcttcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcg 889
|||||||||||||||||| ||||||||| ||| ||||||| |||||||| |||||||
Sbjct: 491 cagttcttcttcccaccatgcttcccagsyttcagctcctttcacaccaattccacctct 432
Query: 890 ataaaacagccaatttgtccagtctctgaaatcctcaacaatcttctgccattcaaatcc 949
||||| |||||||||||||| ||| |||| ||||| || | |||||||| ||||||||
Sbjct: 431 gtaaaagagccaatttgtccattctttgaagtcctccacgactttctgccactcaaatcc 372
Query: 950 agatgggttaaataaatagggagcaaaaagccaaga 985
| ||||| |||| || |||||||| ||||||||
Sbjct: 371 ggcagggttgaataggtacggagcaaacagccaaga 336
>gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome III BAC T1B9 genomic sequence, complete
sequence
Length = 99128
Score = 103 bits (52), Expect = 7e-020
Identities = 85/96 (88%)
Strand = Plus / Minus
Query: 830 cagttcttcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcg 889
|||||||||||||||||| |||||||||||||| ||||||| |||||||| |||||||
Sbjct: 68663 cagttcttcttcccaccatgcttcccagctttcagctcctttcacaccaattccacctct 68604
Query: 890 ataaaacagccaatttgtccagtctctgaaatcctc 925
||||| |||||||||||||| ||| |||| |||||
Sbjct: 68603 gtaaaagagccaatttgtccattctttgaagtcctc 68568
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 103 bits (52), Expect = 7e-020
Identities = 85/96 (88%)
Strand = Plus / Minus
Query: 830 cagttcttcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcg 889
|||||||||||||||||| |||||||||||||| ||||||| |||||||| |||||||
Sbjct: 2300298 cagttcttcttcccaccatgcttcccagctttcagctcctttcacaccaattccacctct 2300239
Query: 890 ataaaacagccaatttgtccagtctctgaaatcctc 925
||||| |||||||||||||| ||| |||| |||||
Sbjct: 2300238 gtaaaagagccaatttgtccattctttgaagtcctc 2300203
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 103 bits (52), Expect = 7e-020
Identities = 85/96 (88%)
Strand = Plus / Plus
Query: 830 cagttcttcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcg 889
|||||||||||||||||| |||||||||||||| ||||||| |||||||| |||||||
Sbjct: 2266126 cagttcttcttcccaccatgcttcccagctttcagctcctttcacaccaattccacctct 2266185
Query: 890 ataaaacagccaatttgtccagtctctgaaatcctc 925
||||| |||||||||||||| ||| |||| |||||
Sbjct: 2266186 gtaaaagagccaatttgtccattctttgaagtcctc 2266221
>gb|BP832867.1|BP832867 BP832867 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-94-A16 5',
mRNA sequence
Length = 386
Score = 97.6 bits (49), Expect = 4e-018
Identities = 131/157 (83%), Gaps = 1/157 (0%)
Strand = Plus / Minus
Query: 830 cagttcttcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcg 889
|||||||||||||||||| |||||||||||||| ||||||| |||||||| |||||||
Sbjct: 333 cagttcttcttcccaccatgcttcccagctttcagctcctttcacaccaattccacctct 274
Query: 890 ataaaacagccaa-tttgtccagtctctgaaatcctcaacaatcttctgccattcaaatc 948
| ||| |||||| |||||||| ||| |||| ||||| || | |||||||| |||||||
Sbjct: 273 gtgaaagagccaagtttgtccattctttgaagtcctccacgactttctgccactcaaatc 214
Query: 949 cagatgggttaaataaatagggagcaaaaagccaaga 985
| | ||||| |||| || |||||||| ||||||||
Sbjct: 213 cggcagggttgaataggtacggagcaaacagccaaga 177
>emb|BX824879.1|CNS0A7RK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH7ZB11 of Hormone Treated Callus of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1717
Score = 83.8 bits (42), Expect = 6e-014
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 833 ttcttcttcccaccaagcttcccagctttcttctcctttaacaccaataccacctcgata 892
||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||| ||
Sbjct: 1011 ttcttcttcccaccatgcttcccagctttcatctcctttcacaccaattccacctctatt 952
Query: 893 aaacagccaatttgtcca 910
||| | ||||||| ||||
Sbjct: 951 aaatatccaatttttcca 934
>gb|AQ963066.1|AQ963066 LERGJ26TF LERG Arabidopsis thaliana genomic clone LERGJ26, DNA
sequence
Length = 592
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 919 aatcctcaacaatcttctgccattcaaatccagatgggttaaataaatagggagcaaaaa 978
|||| ||||||||||||||||||||||| ||||| || || || | ||||||||||||
Sbjct: 496 aatcatcaacaatcttctgccattcaaaaccagaaggattgaagaggaagggagcaaaaa 555
Query: 979 gcca 982
||||
Sbjct: 556 gcca 559
>gb|AQ963067.1|AQ963067 LERGJ26TR LERG Arabidopsis thaliana genomic clone LERGJ26, DNA
sequence
Length = 604
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 919 aatcctcaacaatcttctgccattcaaatccagatgggttaaataaatagggagcaaaaa 978
|||| ||||||||||||||||||||||| ||||| || || || | ||||||||||||
Sbjct: 97 aatcatcaacaatcttctgccattcaaaaccagaaggattgaagaggaagggagcaaaaa 38
Query: 979 gcca 982
||||
Sbjct: 37 gcca 34
>emb|AX651854.1| Sequence 720 from Patent WO03000898
Length = 5892
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 919 aatcctcaacaatcttctgccattcaaatccagatgggttaaataaatagggagcaaaaa 978
|||| ||||||||||||||||||||||| ||||| || || || | ||||||||||||
Sbjct: 5299 aatcatcaacaatcttctgccattcaaaaccagaaggattgaagaggaagggagcaaaaa 5240
Query: 979 gcca 982
||||
Sbjct: 5239 gcca 5236
>emb|CR379747.1| Arabidopsis thaliana transposon insertion STS GT_3.11877, sequence
tagged site
Length = 473
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 919 aatcctcaacaatcttctgccattcaaatccagatgggttaaataaatagggagcaaaaa 978
|||| ||||||||||||||||||||||| ||||| || || || | ||||||||||||
Sbjct: 92 aatcatcaacaatcttctgccattcaaaaccagaaggattgaagaggaagggagcaaaaa 33
Query: 979 gcca 982
||||
Sbjct: 32 gcca 29
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 919 aatcctcaacaatcttctgccattcaaatccagatgggttaaataaatagggagcaaaaa 978
|||| ||||||||||||||||||||||| ||||| || || || | ||||||||||||
Sbjct: 3924387 aatcatcaacaatcttctgccattcaaaaccagaaggattgaagaggaagggagcaaaaa 3924446
Query: 979 gcca 982
||||
Sbjct: 3924447 gcca 3924450
>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project)
Length = 90020
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 919 aatcctcaacaatcttctgccattcaaatccagatgggttaaataaatagggagcaaaaa 978
|||| ||||||||||||||||||||||| ||||| || || || | ||||||||||||
Sbjct: 63228 aatcatcaacaatcttctgccattcaaaaccagaaggattgaagaggaagggagcaaaaa 63287
Query: 979 gcca 982
||||
Sbjct: 63288 gcca 63291
>ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTHASE-LIKE 12);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT5G13000 (ATGSL12) mRNA, complete cds
Length = 6194
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 919 aatcctcaacaatcttctgccattcaaatccagatgggttaaataaatagggagcaaaaa 978
|||| ||||||||||||||||||||||| ||||| || || || | ||||||||||||
Sbjct: 5441 aatcatcaacaatcttctgccattcaaaaccagaaggattgaagaggaagggagcaaaaa 5382
Query: 979 gcca 982
||||
Sbjct: 5381 gcca 5378
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 919 aatcctcaacaatcttctgccattcaaatccagatgggttaaataaatagggagcaaaaa 978
|||| ||||||||||||||||||||||| ||||| || || || | ||||||||||||
Sbjct: 4111414 aatcatcaacaatcttctgccattcaaaaccagaaggattgaagaggaagggagcaaaaa 4111473
Query: 979 gcca 982
||||
Sbjct: 4111474 gcca 4111477
>gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH10 similar to putative protein, mRNA
sequence
Length = 305
Score = 52.0 bits (26), Expect = 2e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1149 cgtacctgcccgggcggccgctcgaa 1174
||||||||||||||||||||||||||
Sbjct: 277 cgtacctgcccgggcggccgctcgaa 302
>emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequence GK-708B12-022965,
genomic survey sequence
Length = 378
Score = 50.1 bits (25), Expect = 9e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 51 gtacctgcccgggcggccgctcgaa 27
>emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequence GK-708H07-022965,
genomic survey sequence
Length = 416
Score = 50.1 bits (25), Expect = 9e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 52 gtacctgcccgggcggccgctcgaa 28
>gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA7 similar to small
nuclear ribosomal protein E, mRNA sequence
Length = 263
Score = 50.1 bits (25), Expect = 9e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 239 gtacctgcccgggcggccgctcgaa 263
>gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA9, mRNA sequence
Length = 328
Score = 50.1 bits (25), Expect = 9e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 304 gtacctgcccgggcggccgctcgaa 328
>gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtaOzHC2 similar to Lhca2
chlorophyll a/b-binding protein, mRNA sequence
Length = 450
Score = 50.1 bits (25), Expect = 9e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 81 gtacctgcccgggcggccgctcgaa 57
>gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudomonas syringae subtracted library
Arabidopsis thaliana cDNA clone DC4-H4 similar to
putative protein with homology to rubisco small subunit,
mRNA sequence
Length = 370
Score = 50.1 bits (25), Expect = 9e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 84 gtacctgcccgggcggccgctcgaa 60
>gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudomonas syringae subtracted library
Arabidopsis thaliana cDNA clone DC1-C2 similar to
putative tyrosine aminotransferase, mRNA sequence
Length = 579
Score = 50.1 bits (25), Expect = 9e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 59 gtacctgcccgggcggccgctcgaa 35
>gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RAA10 similar to chlorophyll a/b-binding
protein, mRNA sequence
Length = 527
Score = 50.1 bits (25), Expect = 9e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 366 gtacctgcccgggcggccgctcgaa 390
>gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-FF9 similar to UNKNOWN PROTEIN, mRNA sequence
Length = 421
Score = 50.1 bits (25), Expect = 9e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 397 gtacctgcccgggcggccgctcgaa 421
>gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EB10, mRNA sequence
Length = 406
Score = 50.1 bits (25), Expect = 9e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 382 gtacctgcccgggcggccgctcgaa 406
>gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLC01 similar to PSII 32Kda protein, mRNA
sequence
Length = 358
Score = 50.1 bits (25), Expect = 9e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 329 gtacctgcccgggcggccgctcgaa 353
>gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH04 similar to PsbA gene in chloroplast
genome, mRNA sequence
Length = 360
Score = 50.1 bits (25), Expect = 9e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 332 gtacctgcccgggcggccgctcgaa 356
>gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EH12 similar to putative protein, mRNA sequence
Length = 271
Score = 50.1 bits (25), Expect = 9e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||||
Sbjct: 247 gtacctgcccgggcggccgctcgaa 271
>gb|AC006436.5| Arabidopsis thaliana chromosome 2 clone F13J11 map mi398, complete
sequence
Length = 104009
Score = 50.1 bits (25), Expect = 9e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1085 ctccatccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||| ||||||||||| ||||||| ||||| || | ||||||||| ||||||||
Sbjct: 13495 ctccattcctttcacaaagtggcttctcgaatacattctgtagttctctgcaaactt 13439
>gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F5 map PR1, complete
sequence
Length = 102585
Score = 50.1 bits (25), Expect = 9e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1085 ctccatccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||| ||||||||||| ||||||| ||||| || | ||||||||| ||||||||
Sbjct: 95697 ctccattcctttcacaaagtggcttctcgaatacattctgtagttctctgcaaactt 95641
>tpg|BK001470.1| TPA: Arabidopsis thaliana callose synthase (LAP1) mRNA, complete cds
Length = 5772
Score = 50.1 bits (25), Expect = 9e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1085 ctccatccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||| ||||||||||| ||||||| ||||| || | ||||||||| ||||||||
Sbjct: 4908 ctccattcctttcacaaagtggcttctcgaatacattctgtagttctctgcaaactt 4852
>gb|AY337762.1| Arabidopsis thaliana LAP1 (At2g13680) mRNA, complete cds
Length = 5950
Score = 50.1 bits (25), Expect = 9e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1085 ctccatccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||| ||||||||||| ||||||| ||||| || | ||||||||| ||||||||
Sbjct: 5061 ctccattcctttcacaaagtggcttctcgaatacattctgtagttctctgcaaactt 5005
>ref|NM_179622.2| Arabidopsis thaliana 1,3-beta-glucan synthase AT2G13680 mRNA,
complete cds
Length = 5772
Score = 50.1 bits (25), Expect = 9e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1085 ctccatccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||| ||||||||||| ||||||| ||||| || | ||||||||| ||||||||
Sbjct: 4908 ctccattcctttcacaaagtggcttctcgaatacattctgtagttctctgcaaactt 4852
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 50.1 bits (25), Expect = 9e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 1085 ctccatccctttcacaaaatggcttcgagaataaatacggtagttctcagcaaactt 1141
|||||| ||||||||||| ||||||| ||||| || | ||||||||| ||||||||
Sbjct: 5712352 ctccattcctttcacaaagtggcttctcgaatacattctgtagttctctgcaaactt 5712296
>gb|CB074186.1|CB074186 EST02508 Early Ovule Development Forward Subtracted Library
Arabidopsis thaliana cDNA clone 1D17G5 similar to blue
copper protein, mRNA sequence
Length = 149
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 33 gtacctgcccgggcggccgctcga 10
>gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-BB7 similar to PUTATIVE PROTEIN, mRNA sequence
Length = 320
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 213 gtacctgcccgggcggccgctcga 236
>gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-AA5 similar to NAD dependent epimerase, mRNA
sequence
Length = 601
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 452 gtacctgcccgggcggccgctcga 475
>gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 10D03, mRNA sequence
Length = 640
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 123 gtacctgcccgggcggccgctcga 146
>emb|AX505609.1| Sequence 304 from Patent WO0216655
Length = 414
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1151 tacctgcccgggcggccgctcgaa 1174
||||||||||||||||||||||||
Sbjct: 29 tacctgcccgggcggccgctcgaa 6
>emb|AX507774.1| Sequence 2469 from Patent WO0216655
Length = 238
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1150 gtacctgcccgggcggccgctcga 1173
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|F14233.1|F14233 ATTS5155 Gif-SiliqueB Arabidopsis thaliana cDNA clone YBY072 5'
similar to Rice cDNA partial sequence, mRNA sequence
Length = 324
Score = 46.1 bits (23), Expect = 0.014
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 918 aaatcctcaacaatcttctgccattcaaatccaga 952
|||||||| ||| |||| |||||||||||||||||
Sbjct: 180 aaatcctcgacagtcttttgccattcaaatccaga 146
>gb|CB185793.2|CB185793 EST00720 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone RPM3-G9 similar
to ARF GAP-like zinc finger-containing protein (ZIGA2),
mRNA sequence
Length = 746
Score = 46.1 bits (23), Expect = 0.014
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||
Sbjct: 69 acctgcccgggcggccgctcgaa 47
>gb|CB185942.1|CB185942 EST01133 Arabidopsis virulent Pseudomonas syringae subtracted library
Arabidopsis thaliana cDNA clone DC8-G7 similar to
putative 60S ribosomal protein L18, mRNA sequence
Length = 602
Score = 46.1 bits (23), Expect = 0.014
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1152 acctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||
Sbjct: 68 acctgcccgggcggccgctcgaa 46
>gb|CB185943.1|CB185943 EST01134 Arabidopsis virulent Pseudomonas syringae subtracted library
Arabidopsis thaliana cDNA clone DC8-H5 similar to WD
repeat domain containing protein, mRNA sequence
Length = 473
Score = 46.1 bits (23), Expect = 0.014
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1152 acctgcccgggcggccgctcgaa 1174
|||||||||||||||||||||||
Sbjct: 339 acctgcccgggcggccgctcgaa 361
>gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RBC07 similar to PSI subunit, mRNA sequence
Length = 249
Score = 46.1 bits (23), Expect = 0.014
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1150 gtacctgcccgggcggccgctcg 1172
|||||||||||||||||||||||
Sbjct: 224 gtacctgcccgggcggccgctcg 246
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 684,621
Number of Sequences: 1013581
Number of extensions: 684621
Number of successful extensions: 53306
Number of sequences better than 0.5: 63
Number of HSP's better than 0.5 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51799
Number of HSP's gapped (non-prelim): 1499
length of query: 1174
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1154
effective length of database: 888,669,252
effective search space: 1025524316808
effective search space used: 1025524316808
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)