BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3024030.2.1
(412 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 52 8e-005
emb|AL391143.1|ATT20K14 Arabidopsis thaliana DNA chromosome... 52 8e-005
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 52 8e-005
emb|X77335.1|ATMET11 A.thaliana gene for methyltransferase 48 0.001
emb|AJ522335.1|ATH522335 Arabidopsis thaliana T-DNA flankin... 48 0.001
gb|AC009323.4|AC009323 Arabidopsis thaliana chromosome I BA... 48 0.001
gb|AC007167.5| Arabidopsis thaliana chromosome 2 clone F3C1... 48 0.001
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 48 0.001
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 48 0.001
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 48 0.001
gb|AC024227.3|AC024227 Arabidopsis thaliana chromosome I cl... 46 0.005
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 46 0.005
gb|AC024174.2|T21E18 Sequence of BAC T21E18 from Arabidopsi... 46 0.005
gb|AC005315.3| Arabidopsis thaliana chromosome 2 clone T9I4... 46 0.005
emb|AJ840618.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.005
gb|CW846483.1|CW846483 GT13308.Ds5.03.26.2004.jx55.333 Arab... 44 0.018
gb|AF058826.1|AF058826 Arabidopsis thaliana BAC T26D22 44 0.018
gb|AF104919.1|T15B16 Arabidopsis thaliana BAC T15B16 44 0.018
gb|AC005508.1|AC005508 Arabidopsis thaliana chromosome I BA... 44 0.018
gb|AC000348.2|AC000348 Genomic sequence for Arabidopsis tha... 44 0.018
gb|AC000107.2|AC000107 Genomic sequence for Arabidopsis tha... 44 0.018
emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, shor... 44 0.018
dbj|AB025611.1| Arabidopsis thaliana genomic DNA, chromosom... 44 0.018
emb|CR380437.1| Arabidopsis thaliana transposon insertion S... 44 0.018
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 44 0.018
emb|AL049711.3|ATF4F15 Arabidopsis thaliana DNA chromosome ... 44 0.018
emb|AL161492.2|ATCHRIV4 Arabidopsis thaliana DNA chromosome... 44 0.018
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 44 0.018
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 44 0.018
emb|AL759022.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.073
gb|T45317.1|T45317 8580 Lambda-PRL2 Arabidopsis thaliana cD... 42 0.073
gb|AU226126.1|AU226126 AU226126 RAFL14 Arabidopsis thaliana... 42 0.073
gb|AV561025.1|AV561025 AV561025 Arabidopsis thaliana green ... 42 0.073
gb|BP567696.1|BP567696 BP567696 RAFL14 Arabidopsis thaliana... 42 0.073
gb|BP569279.1|BP569279 BP569279 RAFL14 Arabidopsis thaliana... 42 0.073
gb|BP582357.1|BP582357 BP582357 RAFL14 Arabidopsis thaliana... 42 0.073
gb|BP601861.1|BP601861 BP601861 RAFL16 Arabidopsis thaliana... 42 0.073
emb|AJ521662.1|ATH521662 Arabidopsis thaliana T-DNA flankin... 42 0.073
gb|AY085516.1| Arabidopsis thaliana clone 155315 mRNA, comp... 42 0.073
gb|AC007260.2| Arabidopsis thaliana chromosome I BAC T30F21... 42 0.073
emb|BX816129.1|CNS0ABSM Arabidopsis thaliana Full-length cD... 42 0.073
emb|BX813914.1|CNS0ACCM Arabidopsis thaliana Full-length cD... 42 0.073
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 42 0.073
dbj|AP000418.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.073
dbj|AP002029.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.073
emb|AL049607.1|ATF11C18 Arabidopsis thaliana DNA chromosome... 42 0.073
emb|AL021636.3|ATF10N7 Arabidopsis thaliana DNA chromosome ... 42 0.073
emb|AL161580.2|ATCHRIV76 Arabidopsis thaliana DNA chromosom... 42 0.073
emb|AL163491.1|ATT31B5 Arabidopsis thaliana DNA chromosome ... 42 0.073
emb|AL163572.1|ATT22N19 Arabidopsis thaliana DNA chromosome... 42 0.073
emb|AL360314.1|ATF2I11 Arabidopsis thaliana DNA chromosome ... 42 0.073
ref|NM_100487.3| Arabidopsis thaliana unknown protein AT1G0... 42 0.073
gb|BH812229.1|BH812229 SALK_061449 Arabidopsis thaliana TDN... 40 0.29
gb|CC053341.1|CC053341 SALK_042438.38.10.x Arabidopsis thal... 40 0.29
emb|AJ587569.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.29
gb|CL471244.1|CL471244 SAIL_156_G08.v1 SAIL Collection Arab... 40 0.29
gb|CL483297.1|CL483297 SAIL_37_E12.v1 SAIL Collection Arabi... 40 0.29
emb|AL951988.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.29
gb|CW799068.1|CW799068 WiscDsLox320F12 Arabidopsis thaliana... 40 0.29
gb|AU227765.1|AU227765 AU227765 RAFL15 Arabidopsis thaliana... 40 0.29
gb|AV533912.1|AV533912 AV533912 Arabidopsis thaliana flower... 40 0.29
gb|AV548216.1|AV548216 AV548216 Arabidopsis thaliana roots ... 40 0.29
gb|BP589654.1|BP589654 BP589654 RAFL15 Arabidopsis thaliana... 40 0.29
gb|AF367305.1| Arabidopsis thaliana AT4g31790/F28M20_20 mRN... 40 0.29
gb|BT002970.1| Arabidopsis thaliana clone RAFL15-22-E11 (R2... 40 0.29
gb|AC008016.2|F6D8 Arabidopsis thaliana chromosome 1 BAC F6... 40 0.29
gb|AC069252.4|AC069252 Genomic sequence for Arabidopsis tha... 40 0.29
gb|AC003105.3| Arabidopsis thaliana chromosome 2 clone F18A... 40 0.29
emb|BX827891.1|CNS0A2C0 Arabidopsis thaliana Full-length cD... 40 0.29
dbj|AB010075.1| Arabidopsis thaliana genomic DNA, chromosom... 40 0.29
dbj|AB005231.2| Arabidopsis thaliana genomic DNA, chromosom... 40 0.29
emb|AL021684.1|ATF6H11 Arabidopsis thaliana DNA chromosome ... 40 0.29
emb|AL031004.1|ATF28M20 Arabidopsis thaliana DNA chromosome... 40 0.29
emb|AL049862.1|ATF18B3 Arabidopsis thaliana DNA chromosome ... 40 0.29
emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosom... 40 0.29
ref|NM_119328.2| Arabidopsis thaliana diphthine synthase/ m... 40 0.29
ref|NM_114938.2| Arabidopsis thaliana unknown protein AT3G5... 40 0.29
ref|NM_202926.1| Arabidopsis thaliana diphthine synthase/ m... 40 0.29
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 52.0 bits (26), Expect = 8e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaagaa 41
||||||||||||||||||||||||||
Sbjct: 4845266 aaaccaaaccaaaccaaaccaaagaa 4845291
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaa 37
||||||||||||||||||||||
Sbjct: 12679476 aaaccaaaccaaaccaaaccaa 12679497
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 acaaaccaaaccaaaccaaac 34
|||||||||||||||||||||
Sbjct: 13354203 acaaaccaaaccaaaccaaac 13354223
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 18 accaaaccaaaccaaaccaaa 38
|||||||||||||||||||||
Sbjct: 4080326 accaaaccaaaccaaaccaaa 4080306
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaacca 36
|||||||||||||||||||||
Sbjct: 3421737 aaaccaaaccaaaccaaacca 3421757
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 36 aaagaactcactaaacacct 55
||||||||||||||||||||
Sbjct: 23228895 aaagaactcactaaacacct 23228876
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
|||| |||||||||||||||||||
Sbjct: 14198839 caaatcaaaccaaaccaaaccaaa 14198816
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
|||| |||||||||||||||||||
Sbjct: 13354199 caaaacaaaccaaaccaaaccaaa 13354222
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 4080324 caaaccaaaccaaaccaaac 4080305
>emb|AL391143.1|ATT20K14 Arabidopsis thaliana DNA chromosome 5, BAC clone T20K14 (ESSA project)
Length = 90176
Score = 52.0 bits (26), Expect = 8e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaagaa 41
||||||||||||||||||||||||||
Sbjct: 68068 aaaccaaaccaaaccaaaccaaagaa 68093
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 52.0 bits (26), Expect = 8e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaagaa 41
||||||||||||||||||||||||||
Sbjct: 5062293 aaaccaaaccaaaccaaaccaaagaa 5062318
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaa 37
||||||||||||||||||||||
Sbjct: 13633331 aaaccaaaccaaaccaaaccaa 13633352
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 acaaaccaaaccaaaccaaac 34
|||||||||||||||||||||
Sbjct: 14477357 acaaaccaaaccaaaccaaac 14477377
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 acaaaccaaaccaaaccaaac 34
|||||||||||||||||||||
Sbjct: 14418058 acaaaccaaaccaaaccaaac 14418078
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 18 accaaaccaaaccaaaccaaa 38
|||||||||||||||||||||
Sbjct: 4267353 accaaaccaaaccaaaccaaa 4267333
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaacca 36
|||||||||||||||||||||
Sbjct: 3608768 aaaccaaaccaaaccaaacca 3608788
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 36 aaagaactcactaaacacct 55
||||||||||||||||||||
Sbjct: 26288048 aaagaactcactaaacacct 26288029
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
|||| |||||||||||||||||||
Sbjct: 15439500 caaatcaaaccaaaccaaaccaaa 15439477
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
|||| |||||||||||||||||||
Sbjct: 14477353 caaaacaaaccaaaccaaaccaaa 14477376
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
|||| |||||||||||||||||||
Sbjct: 14418054 caaaacaaaccaaaccaaaccaaa 14418077
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 4267351 caaaccaaaccaaaccaaac 4267332
>emb|X77335.1|ATMET11 A.thaliana gene for methyltransferase
Length = 11883
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 9196 caaaccaaaccaaaccaaaccaaa 9173
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaacca 36
||||||||||||||||||||||
Sbjct: 9191 caaaccaaaccaaaccaaacca 9170
>emb|AJ522335.1|ATH522335 Arabidopsis thaliana T-DNA flanking sequence, left border, clone
289E06
Length = 548
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 75 caaaccaaaccaaaccaaaccaaa 52
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||||||
Sbjct: 79 aaaccaaaccaaaccaaaccaaa 57
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaacc 35
|||||||||||||||||||||
Sbjct: 70 caaaccaaaccaaaccaaacc 50
>gb|AC009323.4|AC009323 Arabidopsis thaliana chromosome I BAC F25P12 genomic sequence, complete
sequence
Length = 141748
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 75126 caaaccaaaccaaaccaaaccaaa 75149
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||||
Sbjct: 75131 caaaccaaaccaaaccaaaccaa 75153
>gb|AC007167.5| Arabidopsis thaliana chromosome 2 clone F3C11 map mi310, complete
sequence
Length = 103874
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 66911 caaaccaaaccaaaccaaaccaaa 66934
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||||||
Sbjct: 66907 aaaccaaaccaaaccaaaccaaa 66929
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaacc 35
|||||||||||||||||||||
Sbjct: 66916 caaaccaaaccaaaccaaacc 66936
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 5601660 caaaccaaaccaaaccaaaccaaa 5601637
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||||
Sbjct: 5601655 caaaccaaaccaaaccaaaccaa 5601633
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaacc 35
|||||||||||||||||||||
Sbjct: 13806759 caaaccaaaccaaaccaaacc 13806739
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 19 ccaaaccaaaccaaaccaaa 38
||||||||||||||||||||
Sbjct: 13806760 ccaaaccaaaccaaaccaaa 13806741
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 16 aaaccaaaccaaaccaaacc 35
||||||||||||||||||||
Sbjct: 3962994 aaaccaaaccaaaccaaacc 3962975
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 1257888 caaaccaaaccaaaccaaaccaaa 1257911
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||||||
Sbjct: 12444960 aaaccaaaccaaaccaaaccaaa 12444982
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||||||
Sbjct: 1257884 aaaccaaaccaaaccaaaccaaa 1257906
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaacc 35
|||||||||||||||||||||
Sbjct: 1257893 caaaccaaaccaaaccaaacc 1257913
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 12444964 caaaccaaaccaaaccaaac 12444983
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
|||||| |||||||||||||||||
Sbjct: 11393336 caaaccgaaccaaaccaaaccaaa 11393359
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||||
Sbjct: 21245884 caaaccaaaccaaaccaaaccaaa 21245861
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||||
Sbjct: 21245879 caaaccaaaccaaaccaaaccaa 21245857
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||||||
Sbjct: 1860769 aaaccaaaccaaaccaaaccaaa 1860791
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 16 aaaccaaaccaaaccaaaccaa 37
||||||||||||||||||||||
Sbjct: 11030041 aaaccaaaccaaaccaaaccaa 11030020
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 9367430 aaccaaaccaaaccaaaccaaa 9367409
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaacc 35
|||||||||||||||||||||
Sbjct: 29570440 caaaccaaaccaaaccaaacc 29570420
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 1834708 aaccaaaccaaaccaaaccaa 1834688
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 19 ccaaaccaaaccaaaccaaa 38
||||||||||||||||||||
Sbjct: 29570441 ccaaaccaaaccaaaccaaa 29570422
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 16 aaaccaaaccaaaccaaacc 35
||||||||||||||||||||
Sbjct: 19607399 aaaccaaaccaaaccaaacc 19607380
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 7816293 caaaccaaaccaaaccaaac 7816312
>gb|AC024227.3|AC024227 Arabidopsis thaliana chromosome I clone F23H15, *** SEQUENCING IN
PROGRESS ***
Length = 95600
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||||||
Sbjct: 43525 aaaccaaaccaaaccaaaccaaa 43547
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 17464 aaccaaaccaaaccaaaccaa 17444
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||||||
Sbjct: 1860646 aaaccaaaccaaaccaaaccaaa 1860668
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 16 aaaccaaaccaaaccaaaccaa 37
||||||||||||||||||||||
Sbjct: 11038840 aaaccaaaccaaaccaaaccaa 11038819
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 9376051 aaccaaaccaaaccaaaccaaa 9376030
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 1834585 aaccaaaccaaaccaaaccaa 1834565
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 7816118 caaaccaaaccaaaccaaac 7816137
>gb|AC024174.2|T21E18 Sequence of BAC T21E18 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 74316
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||||||
Sbjct: 59917 aaaccaaaccaaaccaaaccaaa 59939
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 33856 aaccaaaccaaaccaaaccaa 33836
>gb|AC005315.3| Arabidopsis thaliana chromosome 2 clone T9I4 map mi54, complete
sequence
Length = 108393
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||||||
Sbjct: 17619 aaaccaaaccaaaccaaaccaaa 17641
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 17623 caaaccaaaccaaaccaaac 17642
>emb|AJ840618.1| Arabidopsis thaliana T-DNA flanking sequence, right border, clone
603A03
Length = 649
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 16 aaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||||||||
Sbjct: 194 aaaccaaaccaaaccaaaccaaa 172
>gb|CW846483.1|CW846483 GT13308.Ds5.03.26.2004.jx55.333 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT13308, DNA sequence
Length = 333
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 232 aaccaaaccaaaccaaaccaaa 211
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 229 caaaccaaaccaaaccaaac 210
>gb|AF058826.1|AF058826 Arabidopsis thaliana BAC T26D22
Length = 113567
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaa 37
||||||||||||||||||||||
Sbjct: 108239 aaaccaaaccaaaccaaaccaa 108260
>gb|AF104919.1|T15B16 Arabidopsis thaliana BAC T15B16
Length = 90596
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 54433 aaccaaaccaaaccaaaccaaa 54412
>gb|AC005508.1|AC005508 Arabidopsis thaliana chromosome I BAC T2P11 genomic sequence, complete
sequence
Length = 85372
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 75357 aaccaaaccaaaccaaaccaaa 75336
>gb|AC000348.2|AC000348 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I,
complete sequence
Length = 111566
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 8903 aaccaaaccaaaccaaaccaaa 8882
>gb|AC000107.2|AC000107 Genomic sequence for Arabidopsis thaliana BAC F17F8 from chromosome I,
complete sequence
Length = 102393
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaa 37
||||||||||||||||||||||
Sbjct: 58997 aaaccaaaccaaaccaaaccaa 59018
>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
Length = 3052119
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 715783 aaccaaaccaaaccaaaccaaa 715804
>dbj|AB025611.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21B8
Length = 50015
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 aaaccaaaccaaaccaaaccaa 37
||||||||||||||||||||||
Sbjct: 4932 aaaccaaaccaaaccaaaccaa 4953
>emb|CR380437.1| Arabidopsis thaliana transposon insertion STS GT_5.109953, sequence
tagged site
Length = 485
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 307 aaccaaaccaaaccaaaccaaa 328
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 19231464 aaccaaaccaaaccaaaccaaa 19231443
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||| ||||||||
Sbjct: 18839004 caaaccaaaccaaacaaaaccaaa 18839027
>emb|AL049711.3|ATF4F15 Arabidopsis thaliana DNA chromosome 3, BAC clone F4F15
Length = 123209
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 17046 aaccaaaccaaaccaaaccaaa 17025
>emb|AL161492.2|ATCHRIV4 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 4
Length = 198697
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 139540 aaccaaaccaaaccaaaccaaa 139561
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 19278991 aaccaaaccaaaccaaaccaaa 19278970
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
||||||||||||||| ||||||||
Sbjct: 18886531 caaaccaaaccaaacaaaaccaaa 18886554
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aaccaaaccaaaccaaaccaaa 38
||||||||||||||||||||||
Sbjct: 716975 aaccaaaccaaaccaaaccaaa 716996
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 15451193 aaccaaaccaaaccaaaccaa 15451173
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||| |||||
Sbjct: 15378824 caaaccaaaccaaaccaagccaaa 15378801
>emb|AL759022.1| Arabidopsis thaliana T-DNA flanking sequence GK-165A03-013365,
genomic survey sequence
Length = 195
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 17 aaccaaaccaaaccaaaccaa 37
>gb|T45317.1|T45317 8580 Lambda-PRL2 Arabidopsis thaliana cDNA clone 70G4T7, mRNA
sequence
Length = 426
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 275 aaccaaaccaaaccaaaccaa 255
>gb|AU226126.1|AU226126 AU226126 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-11-D01 3',
mRNA sequence
Length = 428
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 75 aaccaaaccaaaccaaaccaa 95
>gb|AV561025.1|AV561025 AV561025 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ144f07F 3', mRNA sequence
Length = 556
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 153 aaccaaaccaaaccaaaccaa 173
>gb|BP567696.1|BP567696 BP567696 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-59-A19 3',
mRNA sequence
Length = 419
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 75 aaccaaaccaaaccaaaccaa 95
>gb|BP569279.1|BP569279 BP569279 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-66-E20 3',
mRNA sequence
Length = 430
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 76 aaccaaaccaaaccaaaccaa 96
>gb|BP582357.1|BP582357 BP582357 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-35-O11 3',
mRNA sequence
Length = 440
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 76 aaccaaaccaaaccaaaccaa 96
>gb|BP601861.1|BP601861 BP601861 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-51-P19 3',
mRNA sequence
Length = 427
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 153 aaccaaaccaaaccaaaccaa 173
>emb|AJ521662.1|ATH521662 Arabidopsis thaliana T-DNA flanking sequence, right border, clone
274D03
Length = 89
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 acaaaccaaaccaaaccaaac 34
|||||||||||||||||||||
Sbjct: 27 acaaaccaaaccaaaccaaac 47
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
|||| |||||||||||||||||||
Sbjct: 23 caaaacaaaccaaaccaaaccaaa 46
>gb|AY085516.1| Arabidopsis thaliana clone 155315 mRNA, complete sequence
Length = 1107
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 962 aaccaaaccaaaccaaaccaa 942
>gb|AC007260.2| Arabidopsis thaliana chromosome I BAC T30F21 genomic sequence, complete
sequence
Length = 78378
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaacc 35
|||||||||||||||||||||
Sbjct: 25201 caaaccaaaccaaaccaaacc 25221
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 ccaaaccaaaccaaaccaaa 38
||||||||||||||||||||
Sbjct: 25200 ccaaaccaaaccaaaccaaa 25219
>emb|BX816129.1|CNS0ABSM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH2ZB12 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1068
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 948 aaccaaaccaaaccaaaccaa 928
>emb|BX813914.1|CNS0ACCM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB47ZC10 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1091
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 944 aaccaaaccaaaccaaaccaa 924
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 11363965 aaccaaaccaaaccaaaccaa 11363945
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||| |||||
Sbjct: 11291594 caaaccaaaccaaaccaagccaaa 11291571
>dbj|AP000418.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MPK17
Length = 16898
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 acaaaccaaaccaaaccaaac 34
|||||||||||||||||||||
Sbjct: 6841 acaaaccaaaccaaaccaaac 6861
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
|||| |||||||||||||||||||
Sbjct: 6837 caaaacaaaccaaaccaaaccaaa 6860
>dbj|AP002029.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F24C7
Length = 73663
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 acaaaccaaaccaaaccaaac 34
|||||||||||||||||||||
Sbjct: 21205 acaaaccaaaccaaaccaaac 21225
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
|||| |||||||||||||||||||
Sbjct: 21201 caaaacaaaccaaaccaaaccaaa 21224
>emb|AL049607.1|ATF11C18 Arabidopsis thaliana DNA chromosome 4, BAC clone F11C18 (ESSA project)
Length = 111517
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 77793 aaccaaaccaaaccaaaccaa 77773
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaaccaaa 38
|||||||||||||||||| |||||
Sbjct: 5424 caaaccaaaccaaaccaagccaaa 5401
>emb|AL021636.3|ATF10N7 Arabidopsis thaliana DNA chromosome 4, BAC clone F10N7 (ESSA project)
Length = 96585
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 88062 aaccaaaccaaaccaaaccaa 88082
>emb|AL161580.2|ATCHRIV76 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 76
Length = 165698
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 17 aaccaaaccaaaccaaaccaa 37
|||||||||||||||||||||
Sbjct: 25891 aaccaaaccaaaccaaaccaa 25871
>emb|AL163491.1|ATT31B5 Arabidopsis thaliana DNA chromosome 5, BAC clone T31B5 (ESSA project)
Length = 82612
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 18 accaaaccaaaccaaaccaaa 38
|||||||||||||||||||||
Sbjct: 64151 accaaaccaaaccaaaccaaa 64131
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 64149 caaaccaaaccaaaccaaac 64130
>emb|AL163572.1|ATT22N19 Arabidopsis thaliana DNA chromosome 5, BAC clone T22N19 (ESSA project)
Length = 68948
Score = 42.1 bits (21), Expect = 0.073
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 18 accaaaccaaaccaaaccaaa 38
|||||||||||||||||||||
Sbjct: 10514 accaaaccaaaccaaaccaaa 10494
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15 caaaccaaaccaaaccaaac 34
||||||||||||||||||||
Sbjct: 10512 caaaccaaaccaaaccaaac 10493
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 208,862
Number of Sequences: 1013581
Number of extensions: 208862
Number of successful extensions: 21402
Number of sequences better than 0.5: 78
Number of HSP's better than 0.5 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17539
Number of HSP's gapped (non-prelim): 3559
length of query: 412
length of database: 908,940,872
effective HSP length: 20
effective length of query: 392
effective length of database: 888,669,252
effective search space: 348358346784
effective search space used: 348358346784
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)