BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023825.2.1
(1094 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB263392.1|CB263392 23-E8861-008-010-M05-pBl2 MPIZ-ADIS-... 109 1e-021
gb|CB252620.1|CB252620 21-E010931-019-003-I05-T7R MPIZ-ADIS... 109 1e-021
gb|U66345.1|ATU66345 Arabidopsis thaliana calreticulin (Crt... 109 1e-021
gb|AY056320.1| Arabidopsis thaliana putative calreticulin p... 109 1e-021
gb|BT002494.1| Arabidopsis thaliana calreticulin, putative ... 109 1e-021
emb|BX815527.1|CNS0AATS Arabidopsis thaliana Full-length cD... 109 1e-021
emb|BX815781.1|CNS0ACTU Arabidopsis thaliana Full-length cD... 109 1e-021
ref|NM_100718.2| Arabidopsis thaliana CRT3 (CALRETICULIN 3)... 109 1e-021
ref|NM_202064.1| Arabidopsis thaliana CRT3 (CALRETICULIN 3)... 109 1e-021
gb|CB185504.1|CB185504 EST00037 Arabidopsis Salicylic Acid ... 105 2e-020
gb|BX839057.1|BX839057 BX839057 Arabidopsis thaliana Adult ... 105 2e-020
gb|BP832127.1|BP832127 BP832127 RAFL19 Arabidopsis thaliana... 100 1e-018
gb|BP814229.1|BP814229 BP814229 RAFL19 Arabidopsis thaliana... 70 9e-010
gb|BX835598.1|BX835598 BX835598 Arabidopsis thaliana Adult ... 68 3e-009
gb|B11523.1|B11523 F27D1-Sp6.2 IGF Arabidopsis thaliana gen... 64 5e-008
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 64 5e-008
gb|AC006932.8|AC006932 Genomic sequence for Arabidopsis tha... 64 5e-008
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 64 5e-008
emb|AX412381.1| Sequence 145 from Patent WO0222675 46 0.013
emb|AX412706.1| Sequence 470 from Patent WO0222675 46 0.013
emb|AX507182.1| Sequence 1877 from Patent WO0216655 46 0.013
emb|AX651751.1| Sequence 595 from Patent WO03000898 46 0.013
emb|BX289209.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.20
>gb|CB263392.1|CB263392 23-E8861-008-010-M05-pBl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767M0510Q 5-PRIME, mRNA sequence
Length = 510
Score = 109 bits (55), Expect = 1e-021
Identities = 172/211 (81%)
Strand = Plus / Plus
Query: 225 tacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaag 284
||||| || ||||||||| |||||||| || || || ||||||||||| |||||||||
Sbjct: 56 tacaaaggtccttggaaagcaaagagaatcaagaacccgaactacaagggaaaatggaag 115
Query: 285 accccatggatcgataatccagagtttgaggatgatccagatctttatgtgctgaagcct 344
| ||||||||| ||||||||||| ||||| ||||||||||||||||| || |||||| ||
Sbjct: 116 aacccatggatagataatccagaatttgaagatgatccagatctttacgttctgaagtct 175
Query: 345 ttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttcgacaacatt 404
| || ||| || |||||||| |||||||| || ||||| ||| | || ||||| ||
Sbjct: 176 atcaaatatgcaggcattgaagtatggcaggtgaaggctggctcaatctttgacaatata 235
Query: 405 ctgatttgtgatgaccctgagtatgcaagaa 435
|||| || |||||||| | ||||||||||
Sbjct: 236 ttgatctgcgatgacccggcatatgcaagaa 266
>gb|CB252620.1|CB252620 21-E010931-019-003-I05-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768I053Q 5-PRIME, mRNA sequence
Length = 478
Score = 109 bits (55), Expect = 1e-021
Identities = 172/211 (81%)
Strand = Plus / Plus
Query: 225 tacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaag 284
||||| || ||||||||| |||||||| || || || ||||||||||| |||||||||
Sbjct: 223 tacaaaggtccttggaaagcaaagagaatcaagaacccgaactacaagggaaaatggaag 282
Query: 285 accccatggatcgataatccagagtttgaggatgatccagatctttatgtgctgaagcct 344
| ||||||||| ||||||||||| ||||| ||||||||||||||||| || |||||| ||
Sbjct: 283 aacccatggatagataatccagaatttgaagatgatccagatctttacgttctgaagtct 342
Query: 345 ttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttcgacaacatt 404
| || ||| || |||||||| |||||||| || ||||| ||| | || ||||| ||
Sbjct: 343 atcaaatatgcaggcattgaagtatggcaggtgaaggctggctcaatctttgacaatata 402
Query: 405 ctgatttgtgatgaccctgagtatgcaagaa 435
|||| || |||||||| | ||||||||||
Sbjct: 403 ttgatctgcgatgacccggcatatgcaagaa 433
>gb|U66345.1|ATU66345 Arabidopsis thaliana calreticulin (Crt3) mRNA, complete cds
Length = 1424
Score = 109 bits (55), Expect = 1e-021
Identities = 172/211 (81%)
Strand = Plus / Plus
Query: 225 tacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaag 284
||||| || ||||||||| |||||||| || || || ||||||||||| |||||||||
Sbjct: 863 tacaaaggtccttggaaagcaaagagaatcaagaacccgaactacaagggaaaatggaag 922
Query: 285 accccatggatcgataatccagagtttgaggatgatccagatctttatgtgctgaagcct 344
| ||||||||| ||||||||||| ||||| ||||||||||||||||| || |||||| ||
Sbjct: 923 aacccatggatagataatccagaatttgaagatgatccagatctttacgttctgaagtct 982
Query: 345 ttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttcgacaacatt 404
| || ||| || |||||||| |||||||| || ||||| ||| | || ||||| ||
Sbjct: 983 atcaaatatgcaggcattgaagtatggcaggtgaaggctggctcaatctttgacaatata 1042
Query: 405 ctgatttgtgatgaccctgagtatgcaagaa 435
|||| || |||||||| | ||||||||||
Sbjct: 1043 ttgatctgcgatgacccggcatatgcaagaa 1073
>gb|AY056320.1| Arabidopsis thaliana putative calreticulin protein (At1g08450) mRNA,
complete cds
Length = 1462
Score = 109 bits (55), Expect = 1e-021
Identities = 172/211 (81%)
Strand = Plus / Plus
Query: 225 tacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaag 284
||||| || ||||||||| |||||||| || || || ||||||||||| |||||||||
Sbjct: 866 tacaaaggtccttggaaagcaaagagaatcaagaacccgaactacaagggaaaatggaag 925
Query: 285 accccatggatcgataatccagagtttgaggatgatccagatctttatgtgctgaagcct 344
| ||||||||| ||||||||||| ||||| ||||||||||||||||| || |||||| ||
Sbjct: 926 aacccatggatagataatccagaatttgaagatgatccagatctttacgttctgaagtct 985
Query: 345 ttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttcgacaacatt 404
| || ||| || |||||||| |||||||| || ||||| ||| | || ||||| ||
Sbjct: 986 atcaaatatgcaggcattgaagtatggcaggtgaaggctggctcaatctttgacaatata 1045
Query: 405 ctgatttgtgatgaccctgagtatgcaagaa 435
|||| || |||||||| | ||||||||||
Sbjct: 1046 ttgatctgcgatgacccggcatatgcaagaa 1076
>gb|BT002494.1| Arabidopsis thaliana calreticulin, putative (At1g08450) mRNA,
complete cds
Length = 1426
Score = 109 bits (55), Expect = 1e-021
Identities = 172/211 (81%)
Strand = Plus / Plus
Query: 225 tacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaag 284
||||| || ||||||||| |||||||| || || || ||||||||||| |||||||||
Sbjct: 866 tacaaaggtccttggaaagcaaagagaatcaagaacccgaactacaagggaaaatggaag 925
Query: 285 accccatggatcgataatccagagtttgaggatgatccagatctttatgtgctgaagcct 344
| ||||||||| ||||||||||| ||||| ||||||||||||||||| || |||||| ||
Sbjct: 926 aacccatggatagataatccagaatttgaagatgatccagatctttacgttctgaagtct 985
Query: 345 ttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttcgacaacatt 404
| || ||| || |||||||| |||||||| || ||||| ||| | || ||||| ||
Sbjct: 986 atcaaatatgcaggcattgaagtatggcaggtgaaggctggctcaatctttgacaatata 1045
Query: 405 ctgatttgtgatgaccctgagtatgcaagaa 435
|||| || |||||||| | ||||||||||
Sbjct: 1046 ttgatctgcgatgacccggcatatgcaagaa 1076
>emb|BX815527.1|CNS0AATS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS6ZD12 of Adult vegetative tissue of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1359
Score = 109 bits (55), Expect = 1e-021
Identities = 172/211 (81%)
Strand = Plus / Plus
Query: 225 tacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaag 284
||||| || ||||||||| |||||||| || || || ||||||||||| |||||||||
Sbjct: 853 tacaaaggtccttggaaagcaaagagaatcaagaacccgaactacaagggaaaatggaag 912
Query: 285 accccatggatcgataatccagagtttgaggatgatccagatctttatgtgctgaagcct 344
| ||||||||| ||||||||||| ||||| ||||||||||||||||| || |||||| ||
Sbjct: 913 aacccatggatagataatccagaatttgaagatgatccagatctttacgttctgaagtct 972
Query: 345 ttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttcgacaacatt 404
| || ||| || |||||||| |||||||| || ||||| ||| | || ||||| ||
Sbjct: 973 atcaaatatgcaggcattgaagtatggcaggtgaaggctggctcaatctttgacaatata 1032
Query: 405 ctgatttgtgatgaccctgagtatgcaagaa 435
|||| || |||||||| | ||||||||||
Sbjct: 1033 ttgatctgcgatgacccggcatatgcaagaa 1063
>emb|BX815781.1|CNS0ACTU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS93ZH04 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1391
Score = 109 bits (55), Expect = 1e-021
Identities = 172/211 (81%)
Strand = Plus / Plus
Query: 225 tacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaag 284
||||| || ||||||||| |||||||| || || || ||||||||||| |||||||||
Sbjct: 851 tacaaaggtccttggaaagcaaagagaatcaagaacccgaactacaagggaaaatggaag 910
Query: 285 accccatggatcgataatccagagtttgaggatgatccagatctttatgtgctgaagcct 344
| ||||||||| ||||||||||| ||||| ||||||||||||||||| || |||||| ||
Sbjct: 911 aacccatggatagataatccagaatttgaagatgatccagatctttacgttctgaagtct 970
Query: 345 ttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttcgacaacatt 404
| || ||| || |||||||| |||||||| || ||||| ||| | || ||||| ||
Sbjct: 971 atcaaatatgcaggcattgaagtatggcaggtgaaggctggctcaatctttgacaatata 1030
Query: 405 ctgatttgtgatgaccctgagtatgcaagaa 435
|||| || |||||||| | ||||||||||
Sbjct: 1031 ttgatctgcgatgacccggcatatgcaagaa 1061
>ref|NM_100718.2| Arabidopsis thaliana CRT3 (CALRETICULIN 3); calcium ion binding
AT1G08450 (CRT3) transcript variant AT1G08450.1 mRNA,
complete cds
Length = 1469
Score = 109 bits (55), Expect = 1e-021
Identities = 172/211 (81%)
Strand = Plus / Plus
Query: 225 tacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaag 284
||||| || ||||||||| |||||||| || || || ||||||||||| |||||||||
Sbjct: 866 tacaaaggtccttggaaagcaaagagaatcaagaacccgaactacaagggaaaatggaag 925
Query: 285 accccatggatcgataatccagagtttgaggatgatccagatctttatgtgctgaagcct 344
| ||||||||| ||||||||||| ||||| ||||||||||||||||| || |||||| ||
Sbjct: 926 aacccatggatagataatccagaatttgaagatgatccagatctttacgttctgaagtct 985
Query: 345 ttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttcgacaacatt 404
| || ||| || |||||||| |||||||| || ||||| ||| | || ||||| ||
Sbjct: 986 atcaaatatgcaggcattgaagtatggcaggtgaaggctggctcaatctttgacaatata 1045
Query: 405 ctgatttgtgatgaccctgagtatgcaagaa 435
|||| || |||||||| | ||||||||||
Sbjct: 1046 ttgatctgcgatgacccggcatatgcaagaa 1076
>ref|NM_202064.1| Arabidopsis thaliana CRT3 (CALRETICULIN 3); calcium ion binding
AT1G08450 (CRT3) transcript variant AT1G08450.2 mRNA,
complete cds
Length = 1307
Score = 109 bits (55), Expect = 1e-021
Identities = 172/211 (81%)
Strand = Plus / Plus
Query: 225 tacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaag 284
||||| || ||||||||| |||||||| || || || ||||||||||| |||||||||
Sbjct: 704 tacaaaggtccttggaaagcaaagagaatcaagaacccgaactacaagggaaaatggaag 763
Query: 285 accccatggatcgataatccagagtttgaggatgatccagatctttatgtgctgaagcct 344
| ||||||||| ||||||||||| ||||| ||||||||||||||||| || |||||| ||
Sbjct: 764 aacccatggatagataatccagaatttgaagatgatccagatctttacgttctgaagtct 823
Query: 345 ttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttcgacaacatt 404
| || ||| || |||||||| |||||||| || ||||| ||| | || ||||| ||
Sbjct: 824 atcaaatatgcaggcattgaagtatggcaggtgaaggctggctcaatctttgacaatata 883
Query: 405 ctgatttgtgatgaccctgagtatgcaagaa 435
|||| || |||||||| | ||||||||||
Sbjct: 884 ttgatctgcgatgacccggcatatgcaagaa 914
>gb|CB185504.1|CB185504 EST00037 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-G2 similar to putative
calreticulin, mRNA sequence
Length = 496
Score = 105 bits (53), Expect = 2e-020
Identities = 143/173 (82%)
Strand = Plus / Plus
Query: 264 aactacaagggtaaatggaagaccccatggatcgataatccagagtttgaggatgatcca 323
||||||||||| |||||||||| ||||||||| ||||||||||| ||||| |||||||||
Sbjct: 34 aactacaagggaaaatggaagaacccatggatagataatccagaatttgaagatgatcca 93
Query: 324 gatctttatgtgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagct 383
|||||||| || |||||| || | || ||| || |||||||| |||||||| || |||
Sbjct: 94 gatctttacgttctgaagtctatcaaatatgcaggcattgaagtatggcaggtgaaggct 153
Query: 384 ggttcagttttcgacaacattctgatttgtgatgaccctgagtatgcaagaaa 436
|| ||| | || ||||| || |||| || |||||||| | |||||||||||
Sbjct: 154 ggctcaatctttgacaatatattgatctgcgatgacccggcatatgcaagaaa 206
>gb|BX839057.1|BX839057 BX839057 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS50ZB06 5PRIM, mRNA
sequence
Length = 940
Score = 105 bits (53), Expect = 2e-020
Identities = 101/117 (86%)
Strand = Plus / Plus
Query: 225 tacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaag 284
||||| || ||||||||| |||||||| || || || ||||||||||| |||||||||
Sbjct: 695 tacaaaggtccttggaaagcaaagagaatcaagaacccgaactacaagggaaaatggaag 754
Query: 285 accccatggatcgataatccagagtttgaggatgatccagatctttatgtgctgaag 341
| ||||||||| ||||||||||| ||||| ||||||||||||||||| || ||||||
Sbjct: 755 aacccatggatagataatccagaatttgaagatgatccagatctttacgttctgaag 811
>gb|BP832127.1|BP832127 BP832127 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-91-I19 5',
mRNA sequence
Length = 411
Score = 99.6 bits (50), Expect = 1e-018
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 246 aagagaattaaaaatcctaactacaagggtaaatggaagaccccatggatcgataatcca 305
|||||||| || || || ||||||||||| |||||||||| ||||||||| |||||||||
Sbjct: 315 aagagaatcaagaacccgaactacaagggaaaatggaagaacccatggatagataatcca 374
Query: 306 gagtttgaggatgatccagatcttta 331
|| ||||| |||||||||||||||||
Sbjct: 375 gaatttgaagatgatccagatcttta 400
>gb|BP814229.1|BP814229 BP814229 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-35-A10 5',
mRNA sequence
Length = 381
Score = 69.9 bits (35), Expect = 9e-010
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 225 tacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaag 284
||||| || ||||||||| |||||||| || || || ||||||||||| |||||||||
Sbjct: 296 tacaaaggtccttggaaagcaaagagaatcaagaacccgaactacaagggaaaatggaag 355
Query: 285 accccatggatcgataatccaga 307
| ||||||||| |||||||||||
Sbjct: 356 aacccatggatagataatccaga 378
>gb|BX835598.1|BX835598 BX835598 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS79ZB05 3PRIM, mRNA
sequence
Length = 605
Score = 67.9 bits (34), Expect = 3e-009
Identities = 141/174 (81%), Gaps = 2/174 (1%)
Strand = Plus / Minus
Query: 264 aactacaagggtaaatggaagaccccatggatcgataatcca-gagtttgaggatgat-c 321
||||||||||| |||||||||| ||||||||| ||||||||| || ||||| |||||| |
Sbjct: 500 aactacaagggaaaatggaagaacccatggatagataatccaggaatttgaagatgatgc 441
Query: 322 cagatctttatgtgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaag 381
|||| ||||| || |||||| || | || ||| || |||||||| |||||||| || |
Sbjct: 440 cagacctttacgttctgaagtctatcaaatatgcaggcattgaagtatggcaggtgaagg 381
Query: 382 ctggttcagttttcgacaacattctgatttgtgatgaccctgagtatgcaagaa 435
|||| ||| | || ||||| || |||| || |||||||| | ||||||||||
Sbjct: 380 ctggctcaatctttgacaatatattgatctgcgatgacccggcatatgcaagaa 327
>gb|B11523.1|B11523 F27D1-Sp6.2 IGF Arabidopsis thaliana genomic clone F27D1, DNA
sequence
Length = 1267
Score = 63.9 bits (32), Expect = 5e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 247 agagaattaaaaatcctaactacaagggtaaatggaagaccccatggatcgataatccag 306
||||||| || || || ||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct: 373 agagaatcaagaacccgaactacaagggaaaatggaagaacccatggatagataatccag 314
Score = 46.1 bits (23), Expect = 0.013
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 304 cagagtttgaggatgatccagatctttatgtgctgaagcctttgaagtatattggaattg 363
|||| ||||| ||||||||||||||||| || |||||| || | || ||| || ||||
Sbjct: 224 cagaatttgaagatgatccagatctttacgttctgaagtctatcaaatatgcaggcattg 165
Query: 364 aagtttggcaggtaa 378
|||| ||||||||||
Sbjct: 164 aagtatggcaggtaa 150
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 63.9 bits (32), Expect = 5e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 247 agagaattaaaaatcctaactacaagggtaaatggaagaccccatggatcgataatccag 306
||||||| || || || ||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct: 2669129 agagaatcaagaacccgaactacaagggaaaatggaagaacccatggatagataatccag 2669070
Score = 46.1 bits (23), Expect = 0.013
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 304 cagagtttgaggatgatccagatctttatgtgctgaagcctttgaagtatattggaattg 363
|||| ||||| ||||||||||||||||| || |||||| || | || ||| || ||||
Sbjct: 2668980 cagaatttgaagatgatccagatctttacgttctgaagtctatcaaatatgcaggcattg 2668921
Query: 364 aagtttggcaggtaa 378
|||| ||||||||||
Sbjct: 2668920 aagtatggcaggtaa 2668906
>gb|AC006932.8|AC006932 Genomic sequence for Arabidopsis thaliana BAC T27G7 from chromosome I,
complete sequence
Length = 89479
Score = 63.9 bits (32), Expect = 5e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 247 agagaattaaaaatcctaactacaagggtaaatggaagaccccatggatcgataatccag 306
||||||| || || || ||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct: 50119 agagaatcaagaacccgaactacaagggaaaatggaagaacccatggatagataatccag 50060
Score = 46.1 bits (23), Expect = 0.013
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 304 cagagtttgaggatgatccagatctttatgtgctgaagcctttgaagtatattggaattg 363
|||| ||||| ||||||||||||||||| || |||||| || | || ||| || ||||
Sbjct: 49970 cagaatttgaagatgatccagatctttacgttctgaagtctatcaaatatgcaggcattg 49911
Query: 364 aagtttggcaggtaa 378
|||| ||||||||||
Sbjct: 49910 aagtatggcaggtaa 49896
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 63.9 bits (32), Expect = 5e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 247 agagaattaaaaatcctaactacaagggtaaatggaagaccccatggatcgataatccag 306
||||||| || || || ||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct: 2669282 agagaatcaagaacccgaactacaagggaaaatggaagaacccatggatagataatccag 2669223
Score = 46.1 bits (23), Expect = 0.013
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 304 cagagtttgaggatgatccagatctttatgtgctgaagcctttgaagtatattggaattg 363
|||| ||||| ||||||||||||||||| || |||||| || | || ||| || ||||
Sbjct: 2669133 cagaatttgaagatgatccagatctttacgttctgaagtctatcaaatatgcaggcattg 2669074
Query: 364 aagtttggcaggtaa 378
|||| ||||||||||
Sbjct: 2669073 aagtatggcaggtaa 2669059
>emb|AX412381.1| Sequence 145 from Patent WO0222675
Length = 1242
Score = 46.1 bits (23), Expect = 0.013
Identities = 101/127 (79%)
Strand = Plus / Plus
Query: 309 tttgaggatgatccagatctttatgtgctgaagcctttgaagtatattggaattgaagtt 368
||||| ||||||||||||||||| || |||||| || | || ||| || ||||||||
Sbjct: 850 tttgaagatgatccagatctttacgttctgaagtctatcaaatatgcaggcattgaagta 909
Query: 369 tggcaggtaaaagctggttcagttttcgacaacattctgatttgtgatgaccctgagtat 428
|||||||| || ||||| ||| | || ||||| || |||| || |||||||| | |||
Sbjct: 910 tggcaggtgaaggctggctcaatctttgacaatatattgatctgcgatgacccggcatat 969
Query: 429 gcaagaa 435
|||||||
Sbjct: 970 gcaagaa 976
>emb|AX412706.1| Sequence 470 from Patent WO0222675
Length = 1242
Score = 46.1 bits (23), Expect = 0.013
Identities = 101/127 (79%)
Strand = Plus / Plus
Query: 309 tttgaggatgatccagatctttatgtgctgaagcctttgaagtatattggaattgaagtt 368
||||| ||||||||||||||||| || |||||| || | || ||| || ||||||||
Sbjct: 850 tttgaagatgatccagatctttacgttctgaagtctatcaaatatgcaggcattgaagta 909
Query: 369 tggcaggtaaaagctggttcagttttcgacaacattctgatttgtgatgaccctgagtat 428
|||||||| || ||||| ||| | || ||||| || |||| || |||||||| | |||
Sbjct: 910 tggcaggtgaaggctggctcaatctttgacaatatattgatctgcgatgacccggcatat 969
Query: 429 gcaagaa 435
|||||||
Sbjct: 970 gcaagaa 976
>emb|AX507182.1| Sequence 1877 from Patent WO0216655
Length = 1242
Score = 46.1 bits (23), Expect = 0.013
Identities = 101/127 (79%)
Strand = Plus / Plus
Query: 309 tttgaggatgatccagatctttatgtgctgaagcctttgaagtatattggaattgaagtt 368
||||| ||||||||||||||||| || |||||| || | || ||| || ||||||||
Sbjct: 850 tttgaagatgatccagatctttacgttctgaagtctatcaaatatgcaggcattgaagta 909
Query: 369 tggcaggtaaaagctggttcagttttcgacaacattctgatttgtgatgaccctgagtat 428
|||||||| || ||||| ||| | || ||||| || |||| || |||||||| | |||
Sbjct: 910 tggcaggtgaaggctggctcaatctttgacaatatattgatctgcgatgacccggcatat 969
Query: 429 gcaagaa 435
|||||||
Sbjct: 970 gcaagaa 976
>emb|AX651751.1| Sequence 595 from Patent WO03000898
Length = 1242
Score = 46.1 bits (23), Expect = 0.013
Identities = 101/127 (79%)
Strand = Plus / Plus
Query: 309 tttgaggatgatccagatctttatgtgctgaagcctttgaagtatattggaattgaagtt 368
||||| ||||||||||||||||| || |||||| || | || ||| || ||||||||
Sbjct: 850 tttgaagatgatccagatctttacgttctgaagtctatcaaatatgcaggcattgaagta 909
Query: 369 tggcaggtaaaagctggttcagttttcgacaacattctgatttgtgatgaccctgagtat 428
|||||||| || ||||| ||| | || ||||| || |||| || |||||||| | |||
Sbjct: 910 tggcaggtgaaggctggctcaatctttgacaatatattgatctgcgatgacccggcatat 969
Query: 429 gcaagaa 435
|||||||
Sbjct: 970 gcaagaa 976
>emb|BX289209.1| Arabidopsis thaliana T-DNA flanking sequence GK-424C03-017810,
genomic survey sequence
Length = 326
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1002 acactttaattttaatcttca 1022
|||||||||||||||||||||
Sbjct: 141 acactttaattttaatcttca 161
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 674,867
Number of Sequences: 1013581
Number of extensions: 674867
Number of successful extensions: 55720
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55059
Number of HSP's gapped (non-prelim): 660
length of query: 1094
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1074
effective length of database: 888,669,252
effective search space: 954430776648
effective search space used: 954430776648
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)