BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023585.2.1
(635 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB260762.1|CB260762 67-E009520-012-003-F21-T7R MPIZ-ADIS... 90 5e-016
emb|AJ223508.1|ART223508 Arabidopsis thaliana mRNA for Zwil... 90 5e-016
emb|AX505737.1| Sequence 432 from Patent WO0216655 90 5e-016
ref|NM_123748.2| Arabidopsis thaliana ZLL (ZWILLE) AT5G4381... 90 5e-016
gb|AV441187.1|AV441187 AV441187 Arabidopsis thaliana above-... 74 3e-011
gb|AV523806.1|AV523806 AV523806 Arabidopsis thaliana aboveg... 74 3e-011
gb|AV545970.1|AV545970 AV545970 Arabidopsis thaliana roots ... 74 3e-011
gb|AV563657.1|AV563657 AV563657 Arabidopsis thaliana green ... 74 3e-011
gb|CK119358.1|CK119358 212p13.p1 AtM1 Arabidopsis thaliana ... 74 3e-011
gb|U91995.1|ATU91995 Arabidopsis thaliana Argonaute protein... 74 3e-011
gb|AY080690.1| Arabidopsis thaliana At1g48410 mRNA sequence 74 3e-011
gb|BT000941.1| Arabidopsis thaliana clone C105223 putative ... 74 3e-011
ref|NM_103737.2| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT... 74 3e-011
ref|NM_179453.1| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT... 74 3e-011
gb|CA781259.1|CA781259 014A08AF Infected Arabidopsis Leaf A... 66 8e-009
gb|AF154272.1|AF154272 Arabidopsis thaliana PINHEAD (PINHEA... 66 8e-009
emb|BX815116.1|CNS0AAU5 Arabidopsis thaliana Full-length cD... 66 8e-009
dbj|AB026651.1| Arabidopsis thaliana genomic DNA, chromosom... 66 8e-009
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 66 8e-009
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 66 8e-009
emb|CR397125.1| Arabidopsis thaliana T-DNA flanking sequenc... 62 1e-007
emb|BX818680.1|CNS0ACI7 Arabidopsis thaliana Full-length cD... 62 1e-007
gb|AV548172.1|AV548172 AV548172 Arabidopsis thaliana roots ... 58 2e-006
gb|AV529891.1|AV529891 AV529891 Arabidopsis thaliana aboveg... 54 3e-005
gb|AV532952.1|AV532952 AV532952 Arabidopsis thaliana flower... 54 3e-005
gb|AV534003.1|AV534003 AV534003 Arabidopsis thaliana flower... 54 3e-005
gb|AV548086.1|AV548086 AV548086 Arabidopsis thaliana roots ... 54 3e-005
gb|AV560716.1|AV560716 AV560716 Arabidopsis thaliana green ... 54 3e-005
gb|AY600524.1| Arabidopsis thaliana hypothetical protein (A... 54 3e-005
gb|BE523184.1|BE523184 M35A4STM Arabidopsis developing seed... 52 1e-004
gb|AV813765.1|AV813765 AV813765 RAFL9 Arabidopsis thaliana ... 50 5e-004
gb|BP575189.1|BP575189 BP575189 RAFL14 Arabidopsis thaliana... 50 5e-004
gb|BP601377.1|BP601377 BP601377 RAFL16 Arabidopsis thaliana... 50 5e-004
gb|BP606094.1|BP606094 BP606094 RAFL16 Arabidopsis thaliana... 50 5e-004
gb|BP611041.1|BP611041 BP611041 RAFL16 Arabidopsis thaliana... 50 5e-004
gb|BP617474.1|BP617474 BP617474 RAFL16 Arabidopsis thaliana... 50 5e-004
gb|BP619936.1|BP619936 BP619936 RAFL16 Arabidopsis thaliana... 50 5e-004
gb|BP640077.1|BP640077 BP640077 RAFL19 Arabidopsis thaliana... 50 5e-004
gb|BP782038.1|BP782038 BP782038 RAFL7 Arabidopsis thaliana ... 50 5e-004
gb|BP785021.1|BP785021 BP785021 RAFL7 Arabidopsis thaliana ... 50 5e-004
gb|BP795190.1|BP795190 BP795190 RAFL7 Arabidopsis thaliana ... 50 5e-004
gb|CK121100.1|CK121100 204j21.p1 AtM1 Arabidopsis thaliana ... 48 0.002
gb|BP782965.1|BP782965 BP782965 RAFL7 Arabidopsis thaliana ... 48 0.002
gb|AC020889.3|AC020889 Genomic sequence for Arabidopsis tha... 48 0.002
gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome 1 BAC ... 48 0.002
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 48 0.002
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 48 0.002
gb|BP647257.1|BP647257 BP647257 RAFL19 Arabidopsis thaliana... 44 0.029
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 44 0.029
gb|AC007654.2|AC007654 Genomic sequence for Arabidopsis tha... 44 0.029
ref|NM_102867.1| Arabidopsis thaliana unknown protein AT1G3... 44 0.029
emb|BX530820.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.11
gb|AV792863.1|AV792863 AV792863 RAFL7 Arabidopsis thaliana ... 42 0.11
gb|BP780450.1|BP780450 BP780450 RAFL7 Arabidopsis thaliana ... 42 0.11
gb|AA597737.1|AA597737 29369 Lambda-PRL2 Arabidopsis thalia... 40 0.45
gb|BE522978.1|BE522978 M31A10XTM Arabidopsis developing see... 40 0.45
gb|BX838222.1|BX838222 BX838222 Arabidopsis thaliana Siliqu... 40 0.45
gb|AV555962.1|AV555962 AV555962 Arabidopsis thaliana green ... 40 0.45
emb|BX821460.1|CNS0A8DH Arabidopsis thaliana Full-length cD... 40 0.45
ref|NM_179779.1| Arabidopsis thaliana unknown protein AT2G2... 40 0.45
>gb|CB260762.1|CB260762 67-E009520-012-003-F21-T7R MPIZ-ADIS-012 Arabidopsis thaliana cDNA
clone MPIZp769F213Q 5-PRIME, mRNA sequence
Length = 532
Score = 89.7 bits (45), Expect = 5e-016
Identities = 177/221 (80%)
Strand = Plus / Plus
Query: 10 ttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtc 69
|||||||| ||||| ||||| || || ||||||||||| ||||| || || ||||||||
Sbjct: 240 ttctacctttgtagccatgcgggtattcagggaacaagcaggcctgcacattaccatgtt 299
Query: 70 ctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgc 129
|| ||||| |||||||||||||||||||| | || ||| | ||||| ||||| || ||
Sbjct: 300 ctttgggacgagaacaatttcacagcagatggtattcaatctctgactaacaatctctgt 359
Query: 130 tacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacac 189
|| || ||||| |||||||| || ||||| ||| | || ||||| || || || || ||
Sbjct: 360 tatacctatgcgcggtgcactcggtcggtctctatagttcctccagcgtattatgctcat 419
Query: 190 ctggcagcattccgggcgcggttctacatggaaccagagat 230
|| |||||||| || || || |||||| ||||||| |||||
Sbjct: 420 cttgcagcatttcgagcacgtttctacctggaaccggagat 460
>emb|AJ223508.1|ART223508 Arabidopsis thaliana mRNA for Zwille protein
Length = 3323
Score = 89.7 bits (45), Expect = 5e-016
Identities = 177/221 (80%)
Strand = Plus / Plus
Query: 10 ttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtc 69
|||||||| ||||| ||||| || || ||||||||||| ||||| || || ||||||||
Sbjct: 2754 ttctacctttgtagccatgcgggtattcagggaacaagcaggcctgcacattaccatgtt 2813
Query: 70 ctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgc 129
|| ||||| |||||||||||||||||||| | || ||| | ||||| ||||| || ||
Sbjct: 2814 ctttgggacgagaacaatttcacagcagatggtattcaatctctgactaacaatctctgt 2873
Query: 130 tacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacac 189
|| || ||||| |||||||| || ||||| ||| | || ||||| || || || || ||
Sbjct: 2874 tatacctatgcgcggtgcactcggtcggtctctatagttcctccagcgtattatgctcat 2933
Query: 190 ctggcagcattccgggcgcggttctacatggaaccagagat 230
|| |||||||| || || || |||||| ||||||| |||||
Sbjct: 2934 cttgcagcatttcgagcacgtttctacctggaacctgagat 2974
Score = 40.1 bits (20), Expect = 0.45
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 299 tgaaggagaaggtgaaaagggtgatgttctactgct 334
|||||||||| ||||| || || |||||||||||||
Sbjct: 3058 tgaaggagaatgtgaagagagtaatgttctactgct 3093
>emb|AX505737.1| Sequence 432 from Patent WO0216655
Length = 2967
Score = 89.7 bits (45), Expect = 5e-016
Identities = 177/221 (80%)
Strand = Plus / Plus
Query: 10 ttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtc 69
|||||||| ||||| ||||| || || ||||||||||| ||||| || || ||||||||
Sbjct: 2626 ttctacctttgtagccatgcgggtattcagggaacaagcaggcctgcacattaccatgtt 2685
Query: 70 ctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgc 129
|| ||||| |||||||||||||||||||| | || ||| | ||||| ||||| || ||
Sbjct: 2686 ctttgggacgagaacaatttcacagcagatggtattcaatctctgactaacaatctctgt 2745
Query: 130 tacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacac 189
|| || ||||| |||||||| || ||||| ||| | || ||||| || || || || ||
Sbjct: 2746 tatacctatgcgcggtgcactcggtcggtctctatagttcctccagcgtattatgctcat 2805
Query: 190 ctggcagcattccgggcgcggttctacatggaaccagagat 230
|| |||||||| || || || |||||| ||||||| |||||
Sbjct: 2806 cttgcagcatttcgagcacgtttctacctggaaccggagat 2846
Score = 40.1 bits (20), Expect = 0.45
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 299 tgaaggagaaggtgaaaagggtgatgttctactgct 334
|||||||||| ||||| || || |||||||||||||
Sbjct: 2930 tgaaggagaatgtgaagagagtaatgttctactgct 2965
>ref|NM_123748.2| Arabidopsis thaliana ZLL (ZWILLE) AT5G43810 (ZLL) mRNA, complete cds
Length = 3330
Score = 89.7 bits (45), Expect = 5e-016
Identities = 177/221 (80%)
Strand = Plus / Plus
Query: 10 ttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtc 69
|||||||| ||||| ||||| || || ||||||||||| ||||| || || ||||||||
Sbjct: 2754 ttctacctttgtagccatgcgggtattcagggaacaagcaggcctgcacattaccatgtt 2813
Query: 70 ctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgc 129
|| ||||| |||||||||||||||||||| | || ||| | ||||| ||||| || ||
Sbjct: 2814 ctttgggacgagaacaatttcacagcagatggtattcaatctctgactaacaatctctgt 2873
Query: 130 tacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacac 189
|| || ||||| |||||||| || ||||| ||| | || ||||| || || || || ||
Sbjct: 2874 tatacctatgcgcggtgcactcggtcggtctctatagttcctccagcgtattatgctcat 2933
Query: 190 ctggcagcattccgggcgcggttctacatggaaccagagat 230
|| |||||||| || || || |||||| ||||||| |||||
Sbjct: 2934 cttgcagcatttcgagcacgtttctacctggaaccggagat 2974
Score = 40.1 bits (20), Expect = 0.45
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 299 tgaaggagaaggtgaaaagggtgatgttctactgct 334
|||||||||| ||||| || || |||||||||||||
Sbjct: 3058 tgaaggagaatgtgaagagagtaatgttctactgct 3093
>gb|AV441187.1|AV441187 AV441187 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APZ31g03_f 3', mRNA
sequence
Length = 607
Score = 73.8 bits (37), Expect = 3e-011
Identities = 181/229 (79%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| || |||||||||||||||||||| || ||||| || | | || |||||
Sbjct: 495 gagtttgacttttacctctgtagtcatgctggtattcagggcacttctcgacctgctcat 436
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||| || || |||||||||||||| || || ||||| | | | ||| | ||||| ||
Sbjct: 435 taccacgttctttgggatgagaacaactttactgcagatggacttcaatctctgaccaat 376
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | || ||||| ||||| | ||||||||||| ||||| |||| || ||||||||
Sbjct: 375 aacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatat 316
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| ||||| || ||||| || |||| || ||||||||||| |||||||
Sbjct: 315 tatgcacatctagcagcttttagggctcgattctacatggagccagaga 267
>gb|AV523806.1|AV523806 AV523806 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL40f03F 3', mRNA
sequence
Length = 447
Score = 73.8 bits (37), Expect = 3e-011
Identities = 181/229 (79%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| || |||||||||||||||||||| || ||||| || | | || |||||
Sbjct: 312 gagtttgacttttacctctgtagtcatgctggtattcagggcacttctcgacctgctcat 253
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||| || || |||||||||||||| || || ||||| | | | ||| | ||||| ||
Sbjct: 252 taccacgttctttgggatgagaacaactttactgcagatggacttcaatctctgaccaat 193
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | || ||||| ||||| | ||||||||||| ||||| |||| || ||||||||
Sbjct: 192 aacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatat 133
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| ||||| || ||||| || |||| || ||||||||||| |||||||
Sbjct: 132 tatgcacatctagcagcttttagggctcgattctacatggagccagaga 84
>gb|AV545970.1|AV545970 AV545970 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL06e02F 3', mRNA sequence
Length = 575
Score = 73.8 bits (37), Expect = 3e-011
Identities = 181/229 (79%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| || |||||||||||||||||||| || ||||| || | | || |||||
Sbjct: 506 gagtttgacttttacctctgtagtcatgctggtattcagggcacttctcgacctgctcat 447
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||| || || |||||||||||||| || || ||||| | | | ||| | ||||| ||
Sbjct: 446 taccacgttctttgggatgagaacaactttactgcagatggacttcaatctctgaccaat 387
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | || ||||| ||||| | ||||||||||| ||||| |||| || ||||||||
Sbjct: 386 aacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatat 327
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| ||||| || ||||| || |||| || ||||||||||| |||||||
Sbjct: 326 tatgcacatctagcagcttttagggctcgattctacatggagccagaga 278
>gb|AV563657.1|AV563657 AV563657 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ191b06F 3', mRNA sequence
Length = 601
Score = 73.8 bits (37), Expect = 3e-011
Identities = 181/229 (79%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| || |||||||||||||||||||| || ||||| || | | || |||||
Sbjct: 506 gagtttgacttttacctctgtagtcatgctggtattcagggcacttctcgacctgctcat 447
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||| || || |||||||||||||| || || ||||| | | | ||| | ||||| ||
Sbjct: 446 taccacgttctttgggatgagaacaactttactgcagatggacttcaatctctgaccaat 387
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | || ||||| ||||| | ||||||||||| ||||| |||| || ||||||||
Sbjct: 386 aacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatat 327
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| ||||| || ||||| || |||| || ||||||||||| |||||||
Sbjct: 326 tatgcacatctagcagcttttagggctcgattctacatggagccagaga 278
>gb|CK119358.1|CK119358 212p13.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011P13212
5-PRIME, mRNA sequence
Length = 775
Score = 73.8 bits (37), Expect = 3e-011
Identities = 181/229 (79%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| || |||||||||||||||||||| || ||||| || | | || |||||
Sbjct: 252 gagtttgacttttacctctgtagtcatgctggtattcagggcacttctcgacctgctcat 311
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||| || || |||||||||||||| || || ||||| | | | ||| | ||||| ||
Sbjct: 312 taccacgttctttgggatgagaacaactttactgcagatggacttcaatctctgaccaat 371
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | || ||||| ||||| | ||||||||||| ||||| |||| || ||||||||
Sbjct: 372 aacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatat 431
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| ||||| || ||||| || |||| || ||||||||||| |||||||
Sbjct: 432 tatgcacatctagcagcttttagggctcgattctacatggagccagaga 480
>gb|U91995.1|ATU91995 Arabidopsis thaliana Argonaute protein (AGO1) mRNA, complete cds
Length = 3473
Score = 73.8 bits (37), Expect = 3e-011
Identities = 181/229 (79%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| || |||||||||||||||||||| || ||||| || | | || |||||
Sbjct: 2896 gagtttgacttttacctctgtagtcatgctggtattcagggcacttctcgacctgctcat 2955
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||| || || |||||||||||||| || || ||||| | | | ||| | ||||| ||
Sbjct: 2956 taccacgttctttgggatgagaacaactttactgcagatggacttcaatctctgaccaat 3015
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | || ||||| ||||| | ||||||||||| ||||| |||| || ||||||||
Sbjct: 3016 aacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatat 3075
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| ||||| || ||||| || |||| || ||||||||||| |||||||
Sbjct: 3076 tatgcacatctagcagcttttagggctcgattctacatggagccagaga 3124
>gb|AY080690.1| Arabidopsis thaliana At1g48410 mRNA sequence
Length = 2764
Score = 73.8 bits (37), Expect = 3e-011
Identities = 181/229 (79%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| || |||||||||||||||||||| || ||||| || | | || |||||
Sbjct: 2168 gagtttgacttttacctctgtagtcatgctggtattcagggcacttctcgacctgctcat 2227
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||| || || |||||||||||||| || || ||||| | | | ||| | ||||| ||
Sbjct: 2228 taccacgttctttgggatgagaacaactttactgcagatggacttcaatctctgaccaat 2287
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | || ||||| ||||| | ||||||||||| ||||| |||| || ||||||||
Sbjct: 2288 aacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatat 2347
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| ||||| || ||||| || |||| || ||||||||||| |||||||
Sbjct: 2348 tatgcacatctagcagcttttagggctcgattctacatggagccagaga 2396
>gb|BT000941.1| Arabidopsis thaliana clone C105223 putative leaf development protein
Argonaute (At1g48410) mRNA, complete cds
Length = 3177
Score = 73.8 bits (37), Expect = 3e-011
Identities = 181/229 (79%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| || |||||||||||||||||||| || ||||| || | | || |||||
Sbjct: 2770 gagtttgacttttacctctgtagtcatgctggtattcagggcacttctcgacctgctcat 2829
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||| || || |||||||||||||| || || ||||| | | | ||| | ||||| ||
Sbjct: 2830 taccacgttctttgggatgagaacaactttactgcagatggacttcaatctctgaccaat 2889
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | || ||||| ||||| | ||||||||||| ||||| |||| || ||||||||
Sbjct: 2890 aacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatat 2949
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| ||||| || ||||| || |||| || ||||||||||| |||||||
Sbjct: 2950 tatgcacatctagcagcttttagggctcgattctacatggagccagaga 2998
>ref|NM_103737.2| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT1G48410 (AGO1) transcript
variant AT1G48410.1 mRNA, complete cds
Length = 3483
Score = 73.8 bits (37), Expect = 3e-011
Identities = 181/229 (79%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| || |||||||||||||||||||| || ||||| || | | || |||||
Sbjct: 2919 gagtttgacttttacctctgtagtcatgctggtattcagggcacttctcgacctgctcat 2978
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||| || || |||||||||||||| || || ||||| | | | ||| | ||||| ||
Sbjct: 2979 taccacgttctttgggatgagaacaactttactgcagatggacttcaatctctgaccaat 3038
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | || ||||| ||||| | ||||||||||| ||||| |||| || ||||||||
Sbjct: 3039 aacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatat 3098
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| ||||| || ||||| || |||| || ||||||||||| |||||||
Sbjct: 3099 tatgcacatctagcagcttttagggctcgattctacatggagccagaga 3147
>ref|NM_179453.1| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT1G48410 (AGO1) transcript
variant AT1G48410.2 mRNA, complete cds
Length = 3489
Score = 73.8 bits (37), Expect = 3e-011
Identities = 181/229 (79%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| || |||||||||||||||||||| || ||||| || | | || |||||
Sbjct: 2925 gagtttgacttttacctctgtagtcatgctggtattcagggcacttctcgacctgctcat 2984
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||| || || |||||||||||||| || || ||||| | | | ||| | ||||| ||
Sbjct: 2985 taccacgttctttgggatgagaacaactttactgcagatggacttcaatctctgaccaat 3044
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | || ||||| ||||| | ||||||||||| ||||| |||| || ||||||||
Sbjct: 3045 aacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatat 3104
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| ||||| || ||||| || |||| || ||||||||||| |||||||
Sbjct: 3105 tatgcacatctagcagcttttagggctcgattctacatggagccagaga 3153
>gb|CA781259.1|CA781259 014A08AF Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 569
Score = 65.9 bits (33), Expect = 8e-009
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 10 ttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtc 69
|||||||| ||||| ||||| || || ||||||||||| ||||| | || ||||||||
Sbjct: 485 ttctacctttgtagccatgcgggtattcagggaacaagcaggcctggacattaccatgtt 544
Query: 70 ctctgggatgagaacaatttcacag 94
|| ||||| ||||||||||||||||
Sbjct: 545 ctttgggacgagaacaatttcacag 569
>gb|AF154272.1|AF154272 Arabidopsis thaliana PINHEAD (PINHEAD) gene, complete cds
Length = 5895
Score = 65.9 bits (33), Expect = 8e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 38 agggaacaagtaggcccgctcactaccatgtcctctgggatgagaacaatttcacagcag 97
|||||||||| ||||| || || |||||||| || ||||| |||||||||||||||||||
Sbjct: 5256 agggaacaagcaggcctgcacattaccatgttctttgggacgagaacaatttcacagcag 5315
Query: 98 a 98
|
Sbjct: 5316 a 5316
Score = 40.1 bits (20), Expect = 0.45
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 299 tgaaggagaaggtgaaaagggtgatgttctactgct 334
|||||||||| ||||| || || |||||||||||||
Sbjct: 5627 tgaaggagaatgtgaagagagtaatgttctactgct 5662
>emb|BX815116.1|CNS0AAU5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS34ZG07 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 3188
Score = 65.9 bits (33), Expect = 8e-009
Identities = 180/229 (78%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| || |||||||||||||||||||| || ||||| || | | || |||||
Sbjct: 2646 gagtttgacttttacctctgtagtcatgctggtattcagggcacttctcgacctgctcat 2705
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||| || || |||||||||||||| || || ||||| | | | ||| | ||||| ||
Sbjct: 2706 taccacgttctttgggatgagaacaactttactgcagatggacttcaatctctgaccaat 2765
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | || ||||| ||||| | ||||||||||| ||||| |||| || ||||||||
Sbjct: 2766 aacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatat 2825
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
|| ||||| || ||||| | |||| || ||||||||||| |||||||
Sbjct: 2826 tatgcacatctagcagctcttagggctcgattctacatggagccagaga 2874
>dbj|AB026651.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD19
Length = 87286
Score = 65.9 bits (33), Expect = 8e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 38 agggaacaagtaggcccgctcactaccatgtcctctgggatgagaacaatttcacagcag 97
|||||||||| ||||| || || |||||||| || ||||| |||||||||||||||||||
Sbjct: 71045 agggaacaagcaggcctgcacattaccatgttctttgggacgagaacaatttcacagcag 71104
Query: 98 a 98
|
Sbjct: 71105 a 71105
Score = 40.1 bits (20), Expect = 0.45
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 299 tgaaggagaaggtgaaaagggtgatgttctactgct 334
|||||||||| ||||| || || |||||||||||||
Sbjct: 71416 tgaaggagaatgtgaagagagtaatgttctactgct 71451
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 65.9 bits (33), Expect = 8e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 38 agggaacaagtaggcccgctcactaccatgtcctctgggatgagaacaatttcacagcag 97
|||||||||| ||||| || || |||||||| || ||||| |||||||||||||||||||
Sbjct: 16028875 agggaacaagcaggcctgcacattaccatgttctttgggacgagaacaatttcacagcag 16028934
Query: 98 a 98
|
Sbjct: 16028935 a 16028935
Score = 40.1 bits (20), Expect = 0.45
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 299 tgaaggagaaggtgaaaagggtgatgttctactgct 334
|||||||||| ||||| || || |||||||||||||
Sbjct: 16029246 tgaaggagaatgtgaagagagtaatgttctactgct 16029281
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 65.9 bits (33), Expect = 8e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 38 agggaacaagtaggcccgctcactaccatgtcctctgggatgagaacaatttcacagcag 97
|||||||||| ||||| || || |||||||| || ||||| |||||||||||||||||||
Sbjct: 17633381 agggaacaagcaggcctgcacattaccatgttctttgggacgagaacaatttcacagcag 17633440
Query: 98 a 98
|
Sbjct: 17633441 a 17633441
Score = 40.1 bits (20), Expect = 0.45
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 299 tgaaggagaaggtgaaaagggtgatgttctactgct 334
|||||||||| ||||| || || |||||||||||||
Sbjct: 17633752 tgaaggagaatgtgaagagagtaatgttctactgct 17633787
>emb|CR397125.1| Arabidopsis thaliana T-DNA flanking sequence GK-414C08-026070,
genomic survey sequence
Length = 74
Score = 61.9 bits (31), Expect = 1e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 40 ggaacaagtaggcccgctcactaccatgtcctctgggatgagaacaatttcacagcaga 98
|||||||| ||||| || || |||||||| || ||||| ||||||||||||||||||||
Sbjct: 71 ggaacaagcaggcctgcacattaccatgttctttgggacgagaacaatttcacagcaga 13
>emb|BX818680.1|CNS0ACI7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL91ZD02 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 728
Score = 61.9 bits (31), Expect = 1e-007
Identities = 178/227 (78%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| || |||||||||||||| ||||| || ||||| || | | || |||||
Sbjct: 175 gagtttgacttttacctctgtagtcacgctggtattcagggcacttctcgacctgctcat 234
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||| || || |||||||||||||| || || ||||| | | | ||| | ||||| ||
Sbjct: 235 taccacgttctttgggatgagaacaactttactgcagatggacttcaatctctgaccaat 294
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | || ||||| ||||| | ||||||||||| ||||| |||| || ||||||||
Sbjct: 295 aacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccctgcatat 354
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaaccaga 227
|| ||||| || ||||| || |||| || ||||||||||| |||||
Sbjct: 355 tatgcacatctagcagcttttagggctcgattctacatggagccaga 401
>gb|AV548172.1|AV548172 AV548172 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL48g02F 3', mRNA sequence
Length = 540
Score = 58.0 bits (29), Expect = 2e-006
Identities = 167/213 (78%)
Strand = Plus / Minus
Query: 17 tctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccatgtcctctggg 76
|||||||||||||||| || ||||| || | | || ||||| ||||| || || ||||
Sbjct: 540 tctgtagtcatgctggtattcagggcacttctcgacctgctcattaccacgttctttggg 481
Query: 77 atgagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctacactt 136
|||||||||| || || ||||| | | | ||| | ||||| || ||| | || ||||| |
Sbjct: 480 atgagaacaactttactgcagatggacttcaatctctgaccaataacttatgttacacgt 421
Query: 137 atgcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcag 196
|||| | ||||||||||| ||||| |||| || |||||||| || ||||| || ||||
Sbjct: 420 atgcaagatgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcag 361
Query: 197 cattccgggcgcggttctacatggaaccagaga 229
| || |||| || ||||||||||| |||||||
Sbjct: 360 cttttagggctcgattctacatggagccagaga 328
>gb|AV529891.1|AV529891 AV529891 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL51c02R 5', mRNA
sequence
Length = 528
Score = 54.0 bits (27), Expect = 3e-005
Identities = 138/175 (78%)
Strand = Plus / Minus
Query: 55 gctcactaccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactg 114
||||| ||||| || || |||||||||||||| || || ||||| | | | ||| | |||
Sbjct: 504 gctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaatctctg 445
Query: 115 acaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcct 174
|| || ||| | || ||||| ||||| | ||||||||||| ||||| |||| || |||
Sbjct: 444 accaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccct 385
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
||||| || ||||| || ||||| || |||| || ||||||||||| |||||||
Sbjct: 384 gcatattatgcacatctagcagcttttagggctcgattctacatggagccagaga 330
>gb|AV532952.1|AV532952 AV532952 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB053a03F 3', mRNA sequence
Length = 507
Score = 54.0 bits (27), Expect = 3e-005
Identities = 138/175 (78%)
Strand = Plus / Minus
Query: 55 gctcactaccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactg 114
||||| ||||| || || |||||||||||||| || || ||||| | | | ||| | |||
Sbjct: 506 gctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaatctctg 447
Query: 115 acaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcct 174
|| || ||| | || ||||| ||||| | ||||||||||| ||||| |||| || |||
Sbjct: 446 accaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccct 387
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
||||| || ||||| || ||||| || |||| || ||||||||||| |||||||
Sbjct: 386 gcatattatgcacatctagcagcttttagggctcgattctacatggagccagaga 332
>gb|AV534003.1|AV534003 AV534003 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB072b01F 3', mRNA sequence
Length = 512
Score = 54.0 bits (27), Expect = 3e-005
Identities = 138/175 (78%)
Strand = Plus / Minus
Query: 55 gctcactaccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactg 114
||||| ||||| || || |||||||||||||| || || ||||| | | | ||| | |||
Sbjct: 511 gctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaatctctg 452
Query: 115 acaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcct 174
|| || ||| | || ||||| ||||| | ||||||||||| ||||| |||| || |||
Sbjct: 451 accaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccct 392
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
||||| || ||||| || ||||| || |||| || ||||||||||| |||||||
Sbjct: 391 gcatattatgcacatctagcagcttttagggctcgattctacatggagccagaga 337
>gb|AV548086.1|AV548086 AV548086 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL46g10F 3', mRNA sequence
Length = 511
Score = 54.0 bits (27), Expect = 3e-005
Identities = 138/175 (78%)
Strand = Plus / Minus
Query: 55 gctcactaccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactg 114
||||| ||||| || || |||||||||||||| || || ||||| | | | ||| | |||
Sbjct: 499 gctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaatctctg 440
Query: 115 acaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcct 174
|| || ||| | || ||||| ||||| | ||||||||||| ||||| |||| || |||
Sbjct: 439 accaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccct 380
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
||||| || ||||| || ||||| || |||| || ||||||||||| |||||||
Sbjct: 379 gcatattatgcacatctagcagcttttagggctcgattctacatggagccagaga 325
>gb|AV560716.1|AV560716 AV560716 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ139e07F 3', mRNA sequence
Length = 505
Score = 54.0 bits (27), Expect = 3e-005
Identities = 138/175 (78%)
Strand = Plus / Minus
Query: 55 gctcactaccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactg 114
||||| ||||| || || |||||||||||||| || || ||||| | | | ||| | |||
Sbjct: 503 gctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaatctctg 444
Query: 115 acaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcct 174
|| || ||| | || ||||| ||||| | ||||||||||| ||||| |||| || |||
Sbjct: 443 accaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccct 384
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
||||| || ||||| || ||||| || |||| || ||||||||||| |||||||
Sbjct: 383 gcatattatgcacatctagcagcttttagggctcgattctacatggagccagaga 329
>gb|AY600524.1| Arabidopsis thaliana hypothetical protein (At1g48405) mRNA,
complete cds
Length = 1462
Score = 54.0 bits (27), Expect = 3e-005
Identities = 138/175 (78%)
Strand = Plus / Plus
Query: 55 gctcactaccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactg 114
||||| ||||| || || |||||||||||||| || || ||||| | | | ||| | |||
Sbjct: 9 gctcattaccacgttctttgggatgagaacaactttactgcagatggacttcaatctctg 68
Query: 115 acaaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcct 174
|| || ||| | || ||||| ||||| | ||||||||||| ||||| |||| || |||
Sbjct: 69 accaataacttatgttacacgtatgcaagatgcacacgctcagtttcaattgttccccct 128
Query: 175 gcatactacgcacacctggcagcattccgggcgcggttctacatggaaccagaga 229
||||| || ||||| || ||||| || |||| || ||||||||||| |||||||
Sbjct: 129 gcatattatgcacatctagcagcttttagggctcgattctacatggagccagaga 183
>gb|BE523184.1|BE523184 M35A4STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M35A4 5', mRNA sequence
Length = 394
Score = 52.0 bits (26), Expect = 1e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||| || |||||||||||||||||||| || ||||| || | | || |||||
Sbjct: 271 gagtttgacttttacctctgtagtcatgctggtattcagggcacttctcgacctgctcat 330
Query: 61 taccatgtcctctgggatgagaacaa 86
||||| || || ||||||||||||||
Sbjct: 331 taccacgttctttgggatgagaacaa 356
>gb|AV813765.1|AV813765 AV813765 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-79-O07 3',
mRNA sequence
Length = 399
Score = 50.1 bits (25), Expect = 5e-004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 145 tgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagcattccgg 204
||||||||||| ||||| |||| || |||||||| || ||||| || ||||| || ||
Sbjct: 393 tgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagcttttagg 334
Query: 205 gcgcggttctacatggaaccagaga 229
|| || ||||||||||| |||||||
Sbjct: 333 gctcgattctacatggagccagaga 309
>gb|BP575189.1|BP575189 BP575189 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-11-F08 3',
mRNA sequence
Length = 436
Score = 50.1 bits (25), Expect = 5e-004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 145 tgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagcattccgg 204
||||||||||| ||||| |||| || |||||||| || ||||| || ||||| || ||
Sbjct: 410 tgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagcttttagg 351
Query: 205 gcgcggttctacatggaaccagaga 229
|| || ||||||||||| |||||||
Sbjct: 350 gctcgattctacatggagccagaga 326
>gb|BP601377.1|BP601377 BP601377 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-49-M05 3',
mRNA sequence
Length = 437
Score = 50.1 bits (25), Expect = 5e-004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 145 tgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagcattccgg 204
||||||||||| ||||| |||| || |||||||| || ||||| || ||||| || ||
Sbjct: 410 tgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagcttttagg 351
Query: 205 gcgcggttctacatggaaccagaga 229
|| || ||||||||||| |||||||
Sbjct: 350 gctcgattctacatggagccagaga 326
>gb|BP606094.1|BP606094 BP606094 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-69-I10 3',
mRNA sequence
Length = 424
Score = 50.1 bits (25), Expect = 5e-004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 145 tgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagcattccgg 204
||||||||||| ||||| |||| || |||||||| || ||||| || ||||| || ||
Sbjct: 410 tgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagcttttagg 351
Query: 205 gcgcggttctacatggaaccagaga 229
|| || ||||||||||| |||||||
Sbjct: 350 gctcgattctacatggagccagaga 326
>gb|BP611041.1|BP611041 BP611041 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-84-F12 3',
mRNA sequence
Length = 435
Score = 50.1 bits (25), Expect = 5e-004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 145 tgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagcattccgg 204
||||||||||| ||||| |||| || |||||||| || ||||| || ||||| || ||
Sbjct: 410 tgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagcttttagg 351
Query: 205 gcgcggttctacatggaaccagaga 229
|| || ||||||||||| |||||||
Sbjct: 350 gctcgattctacatggagccagaga 326
>gb|BP617474.1|BP617474 BP617474 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-24-B20 3',
mRNA sequence
Length = 439
Score = 50.1 bits (25), Expect = 5e-004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 145 tgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagcattccgg 204
||||||||||| ||||| |||| || |||||||| || ||||| || ||||| || ||
Sbjct: 411 tgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagcttttagg 352
Query: 205 gcgcggttctacatggaaccagaga 229
|| || ||||||||||| |||||||
Sbjct: 351 gctcgattctacatggagccagaga 327
>gb|BP619936.1|BP619936 BP619936 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-35-C16 3',
mRNA sequence
Length = 431
Score = 50.1 bits (25), Expect = 5e-004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 145 tgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagcattccgg 204
||||||||||| ||||| |||| || |||||||| || ||||| || ||||| || ||
Sbjct: 364 tgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagcttttagg 305
Query: 205 gcgcggttctacatggaaccagaga 229
|| || ||||||||||| |||||||
Sbjct: 304 gctcgattctacatggagccagaga 280
>gb|BP640077.1|BP640077 BP640077 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-50-E21 3',
mRNA sequence
Length = 404
Score = 50.1 bits (25), Expect = 5e-004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 145 tgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagcattccgg 204
||||||||||| ||||| |||| || |||||||| || ||||| || ||||| || ||
Sbjct: 363 tgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagcttttagg 304
Query: 205 gcgcggttctacatggaaccagaga 229
|| || ||||||||||| |||||||
Sbjct: 303 gctcgattctacatggagccagaga 279
>gb|BP782038.1|BP782038 BP782038 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-80-K18 3',
mRNA sequence
Length = 412
Score = 50.1 bits (25), Expect = 5e-004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 145 tgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagcattccgg 204
||||||||||| ||||| |||| || |||||||| || ||||| || ||||| || ||
Sbjct: 411 tgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagcttttagg 352
Query: 205 gcgcggttctacatggaaccagaga 229
|| || ||||||||||| |||||||
Sbjct: 351 gctcgattctacatggagccagaga 327
>gb|BP785021.1|BP785021 BP785021 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-93-B12 3',
mRNA sequence
Length = 432
Score = 50.1 bits (25), Expect = 5e-004
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 145 tgcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagcattccgg 204
||||||||||| ||||| |||| || |||||||| || ||||| || ||||| || ||
Sbjct: 417 tgcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagcttttagg 358
Query: 205 gcgcggttctacatggaaccagaga 229
|| || ||||||||||| |||||||
Sbjct: 357 gctcgattctacatggagccagaga 333
>gb|BP795190.1|BP795190 BP795190 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-64-A11 3',
mRNA sequence
Length = 499
Score = 50.1 bits (25), Expect = 5e-004
Identities = 124/157 (78%)
Strand = Plus / Minus
Query: 73 tgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctttgctac 132
|||||||||||||| || || ||||| | | | ||| | ||||| || ||| | || |||
Sbjct: 490 tgggatgagaacaactttactgcagatggacttcaatctctgaccaataacttatgttac 431
Query: 133 acttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactacgcacacctg 192
|| ||||| | ||||||||||| ||||| |||| || |||||||| || ||||| ||
Sbjct: 430 acgtatgcaagatgcacacgctcagtttcaattgttccccctgcatattatgcacatcta 371
Query: 193 gcagcattccgggcgcggttctacatggaaccagaga 229
||||| || |||| || ||||||||||| |||||||
Sbjct: 370 gcagcttttagggctcgattctacatggagccagaga 334
>gb|CK121100.1|CK121100 204j21.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011J21204
5-PRIME, mRNA sequence
Length = 777
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctgg 32
|||||||| || ||||||||||||||||||||
Sbjct: 744 gagtttgacttttacctctgtagtcatgctgg 775
>gb|BP782965.1|BP782965 BP782965 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-84-D22 3',
mRNA sequence
Length = 416
Score = 48.1 bits (24), Expect = 0.002
Identities = 69/84 (82%)
Strand = Plus / Minus
Query: 146 gcacacgctcggtttctgttgtccctcctgcatactacgcacacctggcagcattccggg 205
|||||||||| ||||| |||| || |||||||| || ||||| || ||||| || |||
Sbjct: 416 gcacacgctcagtttcaattgttccccctgcatattatgcacatctagcagcttttaggg 357
Query: 206 cgcggttctacatggaaccagaga 229
| || ||||||||||| |||||||
Sbjct: 356 ctcgattctacatggagccagaga 333
>gb|AC020889.3|AC020889 Genomic sequence for Arabidopsis thaliana BAC T1N15 from chromosome
I, complete sequence
Length = 95295
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctgg 32
|||||||| || ||||||||||||||||||||
Sbjct: 1837 gagtttgacttttacctctgtagtcatgctgg 1806
>gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome 1 BAC F11A17 sequence, complete
sequence
Length = 102078
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctgg 32
|||||||| || ||||||||||||||||||||
Sbjct: 17119 gagtttgacttttacctctgtagtcatgctgg 17150
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctgg 32
|||||||| || ||||||||||||||||||||
Sbjct: 2246207 gagtttgacttttacctctgtagtcatgctgg 2246176
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctgg 32
|||||||| || ||||||||||||||||||||
Sbjct: 17890613 gagtttgacttttacctctgtagtcatgctgg 17890582
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtca 26
|||| |||||||||||||||||||||
Sbjct: 11191927 gagtatgatttctacctctgtagtca 11191952
>gb|BP647257.1|BP647257 BP647257 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-74-N21 3',
mRNA sequence
Length = 408
Score = 44.1 bits (22), Expect = 0.029
Identities = 71/86 (82%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 145 tgcacacgctc-ggtttctgttgtccctcctgcatactacgcacacctggcagcattccg 203
||||||||||| |||||| |||| || |||||||| || ||||| || ||||| || |
Sbjct: 395 tgcacacgctcaggtttcaattgttccccctgcatattatgcacatctagcagcttttag 336
Query: 204 ggcgcggttctacatggaaccagaga 229
||| || ||||||||||| |||||||
Sbjct: 335 ggctcgattctacatggagccagaga 310
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtca 26
|||| |||||||||||||||||||||
Sbjct: 11200727 gagtatgatttctacctctgtagtca 11200752
>gb|AC007654.2|AC007654 Genomic sequence for Arabidopsis thaliana BAC T19E23 from chromosome I,
complete sequence
Length = 87618
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtca 26
|||| |||||||||||||||||||||
Sbjct: 32438 gagtatgatttctacctctgtagtca 32463
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 275,208
Number of Sequences: 1013581
Number of extensions: 275208
Number of successful extensions: 19304
Number of sequences better than 0.5: 60
Number of HSP's better than 0.5 without gapping: 60
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18528
Number of HSP's gapped (non-prelim): 744
length of query: 635
length of database: 908,940,872
effective HSP length: 20
effective length of query: 615
effective length of database: 888,669,252
effective search space: 546531589980
effective search space used: 546531589980
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)