BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012883.2.1
(1189 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ529154.1|ATH529154 Arabidopsis thaliana T-DNA flankin... 50 9e-004
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 46 0.014
gb|AY063836.1| Arabidopsis thaliana putative syntaxin (At5g... 46 0.014
gb|AY117244.1| Arabidopsis thaliana putative syntaxin (At5g... 46 0.014
gb|AC007259.4| Arabidopsis thaliana chromosome I BAC T28P6 ... 46 0.014
emb|BX831307.1|CNS09ZHM Arabidopsis thaliana Full-length cD... 46 0.014
emb|BX831937.1|CNS09ZN9 Arabidopsis thaliana Full-length cD... 46 0.014
emb|BX830279.1|CNS09ZYR Arabidopsis thaliana Full-length cD... 46 0.014
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 46 0.014
emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome ... 46 0.014
gb|DQ056451.1| Arabidopsis thaliana putative syntaxin (At1g... 46 0.014
ref|NM_100997.1| Arabidopsis thaliana SYP125; t-SNARE AT1G1... 46 0.014
ref|NM_111251.1| Arabidopsis thaliana SYP131; t-SNARE AT3G0... 46 0.014
ref|NM_120890.1| Arabidopsis thaliana SYP132; t-SNARE AT5G0... 46 0.014
ref|NM_001036776.1| Arabidopsis thaliana SYP132; t-SNARE AT... 46 0.014
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 46 0.014
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 46 0.014
emb|AL083613.1|CNS00OSF Arabidopsis thaliana genome survey ... 44 0.055
gb|BH213905.1|BH213905 SALK_009916 Arabidopsis thaliana TDN... 44 0.055
gb|AC009540.6|ATAC009540 Arabidopsis thaliana chromosome II... 44 0.055
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 44 0.055
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 44 0.055
>emb|AJ529154.1|ATH529154 Arabidopsis thaliana T-DNA flanking sequence, left border, clone
179F08
Length = 271
Score = 50.1 bits (25), Expect = 9e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 327 agcaattaagcagcggatggagaaagatattgatgaagtggggaaaatt 375
|||||| ||||| ||||||||| |||| ||||||||||||| ||||||
Sbjct: 101 agcaatcaagcaaaggatggagagagatgttgatgaagtgggaaaaatt 149
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 46.1 bits (23), Expect = 0.014
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 724 caggagcgacatgatgctgtaagggatctagagaggaagcttctggagttgcaacagata 783
|||||| |||||||||| || | ||| |||||| ||| || |||||| |||| ||| |
Sbjct: 3769234 caggagagacatgatgcagtgaaggagatagagaagaatctactggagctgcaccaggtt 3769293
Query: 784 ttcatggacatggcagttcttgttgaggcgcaagg 818
||| |||||||||||| ||| || || ||||||||
Sbjct: 3769294 ttcttggacatggcagctctagtagaagcgcaagg 3769328
>gb|AY063836.1| Arabidopsis thaliana putative syntaxin (At5g08080) mRNA, complete
cds
Length = 1327
Score = 46.1 bits (23), Expect = 0.014
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 427 aataggcaaaaacctggatgtggaaagggttctgccgtggaccgatcaaga 477
||||| |||||||||||||||| ||| || |||| ||||| |||||||||
Sbjct: 511 aatagacaaaaacctggatgtgcaaaaggatctggtgtggatcgatcaaga 561
>gb|AY117244.1| Arabidopsis thaliana putative syntaxin (At5g08080) mRNA, complete
cds
Length = 946
Score = 46.1 bits (23), Expect = 0.014
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 427 aataggcaaaaacctggatgtggaaagggttctgccgtggaccgatcaaga 477
||||| |||||||||||||||| ||| || |||| ||||| |||||||||
Sbjct: 325 aatagacaaaaacctggatgtgcaaaaggatctggtgtggatcgatcaaga 375
>gb|AC007259.4| Arabidopsis thaliana chromosome I BAC T28P6 genomic sequence, complete
sequence
Length = 97146
Score = 46.1 bits (23), Expect = 0.014
Identities = 77/95 (81%)
Strand = Plus / Minus
Query: 724 caggagcgacatgatgctgtaagggatctagagaggaagcttctggagttgcaacagata 783
|||||| |||||||||| || | ||| |||||| ||| || |||||| |||| ||| |
Sbjct: 48667 caggagagacatgatgcagtgaaggagatagagaagaatctactggagctgcaccaggtt 48608
Query: 784 ttcatggacatggcagttcttgttgaggcgcaagg 818
||| |||||||||||| ||| || || ||||||||
Sbjct: 48607 ttcttggacatggcagctctagtagaagcgcaagg 48573
>emb|BX831307.1|CNS09ZHM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS77ZH04 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1170
Score = 46.1 bits (23), Expect = 0.014
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 427 aataggcaaaaacctggatgtggaaagggttctgccgtggaccgatcaaga 477
||||| |||||||||||||||| ||| || |||| ||||| |||||||||
Sbjct: 503 aatagacaaaaacctggatgtgcaaaaggatctggtgtggatcgatcaaga 553
>emb|BX831937.1|CNS09ZN9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH40ZC05 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1213
Score = 46.1 bits (23), Expect = 0.014
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 427 aataggcaaaaacctggatgtggaaagggttctgccgtggaccgatcaaga 477
||||| |||||||||||||||| ||| || |||| ||||| |||||||||
Sbjct: 484 aatagacaaaaacctggatgtgcaaaaggatctggtgtggatcgatcaaga 534
>emb|BX830279.1|CNS09ZYR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB70ZC02 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1270
Score = 46.1 bits (23), Expect = 0.014
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 427 aataggcaaaaacctggatgtggaaagggttctgccgtggaccgatcaaga 477
||||| |||||||||||||||| ||| || |||| ||||| |||||||||
Sbjct: 502 aatagacaaaaacctggatgtgcaaaaggatctggtgtggatcgatcaaga 552
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 46.1 bits (23), Expect = 0.014
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 427 aataggcaaaaacctggatgtggaaagggttctgccgtggaccgatcaaga 477
||||| |||||||||||||||| ||| || |||| ||||| |||||||||
Sbjct: 2408756 aatagacaaaaacctggatgtgcaaaaggatctggtgtggatcgatcaaga 2408806
>emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA project)
Length = 89988
Score = 46.1 bits (23), Expect = 0.014
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 427 aataggcaaaaacctggatgtggaaagggttctgccgtggaccgatcaaga 477
||||| |||||||||||||||| ||| || |||| ||||| |||||||||
Sbjct: 16388 aatagacaaaaacctggatgtgcaaaaggatctggtgtggatcgatcaaga 16438
>gb|DQ056451.1| Arabidopsis thaliana putative syntaxin (At1g11250) mRNA, complete
cds
Length = 897
Score = 46.1 bits (23), Expect = 0.014
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 724 caggagcgacatgatgctgtaagggatctagagaggaagcttctggagttgcaacagata 783
|||||| |||||||||| || | ||| |||||| ||| || |||||| |||| ||| |
Sbjct: 604 caggagagacatgatgcagtgaaggagatagagaagaatctactggagctgcaccaggtt 663
Query: 784 ttcatggacatggcagttcttgttgaggcgcaagg 818
||| |||||||||||| ||| || || ||||||||
Sbjct: 664 ttcttggacatggcagctctagtagaagcgcaagg 698
>ref|NM_100997.1| Arabidopsis thaliana SYP125; t-SNARE AT1G11250 (SYP125) mRNA,
complete cds
Length = 897
Score = 46.1 bits (23), Expect = 0.014
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 724 caggagcgacatgatgctgtaagggatctagagaggaagcttctggagttgcaacagata 783
|||||| |||||||||| || | ||| |||||| ||| || |||||| |||| ||| |
Sbjct: 604 caggagagacatgatgcagtgaaggagatagagaagaatctactggagctgcaccaggtt 663
Query: 784 ttcatggacatggcagttcttgttgaggcgcaagg 818
||| |||||||||||| ||| || || ||||||||
Sbjct: 664 ttcttggacatggcagctctagtagaagcgcaagg 698
>ref|NM_111251.1| Arabidopsis thaliana SYP131; t-SNARE AT3G03800 (SYP131) mRNA,
complete cds
Length = 921
Score = 46.1 bits (23), Expect = 0.014
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 322 atgaaagcaattaagcagcggatggagaaagatattgatgaagtggg 368
|||||| |||| ||||| ||||||||| |||| |||||||||||||
Sbjct: 223 atgaaatcaatcaagcaaaggatggagagagatgttgatgaagtggg 269
>ref|NM_120890.1| Arabidopsis thaliana SYP132; t-SNARE AT5G08080 (SYP132) transcript
variant AT5G08080.1 mRNA, complete cds
Length = 1311
Score = 46.1 bits (23), Expect = 0.014
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 427 aataggcaaaaacctggatgtggaaagggttctgccgtggaccgatcaaga 477
||||| |||||||||||||||| ||| || |||| ||||| |||||||||
Sbjct: 511 aatagacaaaaacctggatgtgcaaaaggatctggtgtggatcgatcaaga 561
>ref|NM_001036776.1| Arabidopsis thaliana SYP132; t-SNARE AT5G08080 (SYP132) transcript
variant AT5G08080.2 mRNA, complete cds
Length = 1432
Score = 46.1 bits (23), Expect = 0.014
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 427 aataggcaaaaacctggatgtggaaagggttctgccgtggaccgatcaaga 477
||||| |||||||||||||||| ||| || |||| ||||| |||||||||
Sbjct: 515 aatagacaaaaacctggatgtgcaaaaggatctggtgtggatcgatcaaga 565
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 46.1 bits (23), Expect = 0.014
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 427 aataggcaaaaacctggatgtggaaagggttctgccgtggaccgatcaaga 477
||||| |||||||||||||||| ||| || |||| ||||| |||||||||
Sbjct: 2589720 aatagacaaaaacctggatgtgcaaaaggatctggtgtggatcgatcaaga 2589770
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 46.1 bits (23), Expect = 0.014
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 724 caggagcgacatgatgctgtaagggatctagagaggaagcttctggagttgcaacagata 783
|||||| |||||||||| || | ||| |||||| ||| || |||||| |||| ||| |
Sbjct: 3769413 caggagagacatgatgcagtgaaggagatagagaagaatctactggagctgcaccaggtt 3769472
Query: 784 ttcatggacatggcagttcttgttgaggcgcaagg 818
||| |||||||||||| ||| || || ||||||||
Sbjct: 3769473 ttcttggacatggcagctctagtagaagcgcaagg 3769507
>emb|AL083613.1|CNS00OSF Arabidopsis thaliana genome survey sequence T7 end of BAC F7E3 of
IGF library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 543
Score = 44.1 bits (22), Expect = 0.055
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 327 agcaattaagcagcggatggagaaagatattgatgaagtggg 368
|||||| ||||| ||||||||| |||| |||||||||||||
Sbjct: 361 agcaatcaagcaaaggatggagagagatgttgatgaagtggg 320
>gb|BH213905.1|BH213905 SALK_009916 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_009916, DNA sequence
Length = 423
Score = 44.1 bits (22), Expect = 0.055
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 327 agcaattaagcagcggatggagaaagatattgatgaagtggg 368
|||||| ||||| ||||||||| |||| |||||||||||||
Sbjct: 161 agcaatcaagcaaaggatggagagagatgttgatgaagtggg 120
>gb|AC009540.6|ATAC009540 Arabidopsis thaliana chromosome III BAC F20H23 genomic sequence,
complete sequence
Length = 101410
Score = 44.1 bits (22), Expect = 0.055
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 327 agcaattaagcagcggatggagaaagatattgatgaagtggg 368
|||||| ||||| ||||||||| |||| |||||||||||||
Sbjct: 46917 agcaatcaagcaaaggatggagagagatgttgatgaagtggg 46876
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 44.1 bits (22), Expect = 0.055
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 327 agcaattaagcagcggatggagaaagatattgatgaagtggg 368
|||||| ||||| ||||||||| |||| |||||||||||||
Sbjct: 958516 agcaatcaagcaaaggatggagagagatgttgatgaagtggg 958475
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 44.1 bits (22), Expect = 0.055
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 327 agcaattaagcagcggatggagaaagatattgatgaagtggg 368
|||||| ||||| ||||||||| |||| |||||||||||||
Sbjct: 970121 agcaatcaagcaaaggatggagagagatgttgatgaagtggg 970162
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 600,282
Number of Sequences: 1013581
Number of extensions: 600282
Number of successful extensions: 43408
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41886
Number of HSP's gapped (non-prelim): 1521
length of query: 1189
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1169
effective length of database: 888,669,252
effective search space: 1038854355588
effective search space used: 1038854355588
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)