BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012873.2.2
(1520 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV440533.1|AV440533 AV440533 Arabidopsis thaliana above-... 70 1e-009
gb|T41765.1|T41765 10346 Lambda-PRL2 Arabidopsis thaliana c... 62 3e-007
gb|AI992693.1|AI992693 701493334 A. thaliana, Ohio State cl... 62 3e-007
gb|BE523063.1|BE523063 M31H3STM Arabidopsis developing seed... 62 3e-007
gb|AU236375.1|AU236375 AU236375 RAFL14 Arabidopsis thaliana... 62 3e-007
gb|BU634974.1|BU634974 013F08 Infected Arabidopsis Leaf Ara... 62 3e-007
gb|AV534376.1|AV534376 AV534376 Arabidopsis thaliana flower... 62 3e-007
gb|AV550189.1|AV550189 AV550189 Arabidopsis thaliana roots ... 62 3e-007
gb|AV552663.1|AV552663 AV552663 Arabidopsis thaliana roots ... 62 3e-007
gb|CK119242.1|CK119242 213h08.p1 AtM1 Arabidopsis thaliana ... 62 3e-007
gb|BP560996.1|BP560996 BP560996 RAFL5 Arabidopsis thaliana ... 62 3e-007
gb|BP805851.1|BP805851 BP805851 RAFL16 Arabidopsis thaliana... 62 3e-007
gb|AF320624.1|AF320624 Arabidopsis thaliana cinnamoyl CoA r... 62 3e-007
gb|AF321114.1|AF321114 Arabidopsis thaliana cinnamoyl-CoA r... 62 3e-007
gb|AY087316.1| Arabidopsis thaliana clone 34141 mRNA, compl... 62 3e-007
gb|AF332459.1| Arabidopsis thaliana clone C00167 (e) putati... 62 3e-007
emb|BX841795.1|CNS09Y5Y Arabidopsis thaliana Full-length cD... 62 3e-007
emb|BX815831.1|CNS0AAHT Arabidopsis thaliana Full-length cD... 62 3e-007
emb|BX815700.1|CNS0ABD9 Arabidopsis thaliana Full-length cD... 62 3e-007
emb|BX815739.1|CNS0ABDT Arabidopsis thaliana Full-length cD... 62 3e-007
emb|BX815406.1|CNS0ABFH Arabidopsis thaliana Full-length cD... 62 3e-007
emb|BX815742.1|CNS0ABF5 Arabidopsis thaliana Full-length cD... 62 3e-007
emb|BX816709.1|CNS0ABPI Arabidopsis thaliana Full-length cD... 62 3e-007
emb|BX813775.1|CNS0AC0E Arabidopsis thaliana Full-length cD... 62 3e-007
ref|NM_101463.2| Arabidopsis thaliana CCR1 (CINNAMOYL COA R... 62 3e-007
gb|AY743921.1| Arabidopsis thaliana cinnamoyl CoA reductase... 62 3e-007
gb|BU636544.1|BU636544 007B10 Infected Arabidopsis Leaf Ara... 56 2e-005
gb|AV519636.1|AV519636 AV519636 Arabidopsis thaliana aboveg... 54 7e-005
gb|BE520377.1|BE520377 M12A7STM Arabidopsis developing seed... 48 0.005
gb|BE521298.1|BE521298 M18G8STM Arabidopsis developing seed... 48 0.005
gb|BE527222.1|BE527222 M67F13STM Arabidopsis developing see... 48 0.005
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 46 0.018
gb|AC010924.2|T24D18 Arabidopsis thaliana chromosome 1 BAC ... 46 0.018
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 46 0.018
emb|BX816189.1|CNS0AE9P Arabidopsis thaliana Full-length cD... 42 0.28
>gb|AV440533.1|AV440533 AV440533 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APD67c02_f 3', mRNA
sequence
Length = 453
Score = 69.9 bits (35), Expect = 1e-009
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||||||||| |||||||||||||||||
Sbjct: 284 ggcgtctttcacacggcttctcctgtcaccgacgacccggaacaaatggtggagccggc 342
>gb|T41765.1|T41765 10346 Lambda-PRL2 Arabidopsis thaliana cDNA clone 67E6T7, mRNA
sequence
Length = 411
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 238 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 296
>gb|AI992693.1|AI992693 701493334 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701493334, mRNA sequence
Length = 482
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 239 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 297
>gb|BE523063.1|BE523063 M31H3STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M31H3 5', mRNA sequence
Length = 374
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 30 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 88
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 249 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 304
>gb|AU236375.1|AU236375 AU236375 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-95-L15 5',
mRNA sequence
Length = 539
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 349 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 407
>gb|BU634974.1|BU634974 013F08 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 701
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 235 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 293
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 454 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 509
>gb|AV534376.1|AV534376 AV534376 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB079c04F 3', mRNA sequence
Length = 530
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 325 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 383
>gb|AV550189.1|AV550189 AV550189 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ109e03R 5', mRNA sequence
Length = 547
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 141 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 199
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 360 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 415
>gb|AV552663.1|AV552663 AV552663 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ35f08R 5', mRNA sequence
Length = 357
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 295 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 353
>gb|CK119242.1|CK119242 213h08.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011H08213
5-PRIME, mRNA sequence
Length = 516
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 307 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 365
>gb|BP560996.1|BP560996 BP560996 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-17-P18 5',
mRNA sequence
Length = 658
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 324 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 382
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 543 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 598
>gb|BP805851.1|BP805851 BP805851 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-07-I19 5',
mRNA sequence
Length = 427
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 152 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 210
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 371 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 426
>gb|AF320624.1|AF320624 Arabidopsis thaliana cinnamoyl CoA reductase isoform 1 (CCR1) mRNA,
complete cds
Length = 1269
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 250 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 308
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 469 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 524
>gb|AF321114.1|AF321114 Arabidopsis thaliana cinnamoyl-CoA reductase mRNA, complete cds
Length = 1035
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 250 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 308
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 469 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 524
>gb|AY087316.1| Arabidopsis thaliana clone 34141 mRNA, complete sequence
Length = 1370
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 352 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 410
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 571 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 626
>gb|AF332459.1| Arabidopsis thaliana clone C00167 (e) putative cinnamoyl CoA
reductase (At1g15950) mRNA, complete cds
Length = 1035
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 250 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 308
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 469 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 524
>emb|BX841795.1|CNS09Y5Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB78ZF03 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1128
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 305 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 363
Score = 46.1 bits (23), Expect = 0.018
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 747 tggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 539 tggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 585
>emb|BX815831.1|CNS0AAHT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH11ZC11 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1305
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 332 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 390
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 551 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 606
>emb|BX815700.1|CNS0ABD9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS85ZF05 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1314
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 332 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 390
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 551 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 606
>emb|BX815739.1|CNS0ABDT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS8ZE04 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1292
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 305 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 363
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 524 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 579
>emb|BX815406.1|CNS0ABFH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS58ZD09 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1305
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 305 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 363
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 524 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 579
>emb|BX815742.1|CNS0ABF5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS8ZF03 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1338
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 332 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 390
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 551 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 606
>emb|BX816709.1|CNS0ABPI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH64ZG07 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1291
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 305 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 363
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 524 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 579
>emb|BX813775.1|CNS0AC0E Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB39ZD03 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1366
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 334 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 392
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 553 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 608
>ref|NM_101463.2| Arabidopsis thaliana CCR1 (CINNAMOYL COA REDUCTASE 1) AT1G15950
(CCR1) mRNA, complete cds
Length = 1386
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 351 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 409
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 570 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 625
>gb|AY743921.1| Arabidopsis thaliana cinnamoyl CoA reductase 1 (ccr1) mRNA,
complete cds
Length = 1035
Score = 61.9 bits (31), Expect = 3e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 516 ggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
|||||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 250 ggcgtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 308
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 469 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 524
>gb|BU636544.1|BU636544 007B10 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 327
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 519 gtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtggagccggc 574
||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||
Sbjct: 184 gtctttcacacggcttctcctgtcaccgacgatccggaacaaatggtggagccggc 239
>gb|AV519636.1|AV519636 AV519636 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APD63h11F 3', mRNA
sequence
Length = 577
Score = 54.0 bits (27), Expect = 7e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 540 gtcaccgacgacccggagcaaatggtggagccggc 574
||||||||||| ||||| |||||||||||||||||
Sbjct: 321 gtcaccgacgatccggaacaaatggtggagccggc 355
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 516 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 571
>gb|BE520377.1|BE520377 M12A7STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M12A7 5', mRNA sequence
Length = 388
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 110 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 165
>gb|BE521298.1|BE521298 M18G8STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M18G8 5', mRNA sequence
Length = 413
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 165 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 220
>gb|BE527222.1|BE527222 M67F13STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600036051R1 5', mRNA sequence
Length = 246
Score = 48.1 bits (24), Expect = 0.005
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
|||| ||| ||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 93 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 148
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 46.1 bits (23), Expect = 0.018
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 747 tggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 5479975 tggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 5480021
>gb|AC010924.2|T24D18 Arabidopsis thaliana chromosome 1 BAC T24D18 sequence, complete
sequence
Length = 80442
Score = 46.1 bits (23), Expect = 0.018
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 747 tggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 15408 tggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 15454
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 46.1 bits (23), Expect = 0.018
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 747 tggtactgctacggcaaggcggtggcggagcacgcggcgtgggagac 793
||||| || ||||||||| ||||||||| || ||||||||||||||
Sbjct: 5480151 tggtattgttacggcaagatggtggcggaacaagcggcgtgggagac 5480197
>emb|BX816189.1|CNS0AE9P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH33ZD01 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1305
Score = 42.1 bits (21), Expect = 0.28
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 738 accaggaactggtactgctacggcaaggcggtggcggagcacgcggcgtggga 790
|||| ||| ||||| || ||||||||| ||||||||| || |||||||||||
Sbjct: 529 accaagaattggtattgttacggcaagatggtggcggaacaagcggcgtggga 581
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 431,615
Number of Sequences: 1013581
Number of extensions: 431615
Number of successful extensions: 31147
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30860
Number of HSP's gapped (non-prelim): 287
length of query: 1520
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1499
effective length of database: 887,655,671
effective search space: 1330595850829
effective search space used: 1330595850829
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)