BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969966.2.1
(1029 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV528283.1|AV528283 AV528283 Arabidopsis thaliana aboveg... 113 6e-023
gb|AF013467.1|AF013467 Arabidopsis thaliana ARF6 (ARF6) mRN... 113 6e-023
gb|AY669788.1| Arabidopsis thaliana clone C105343 ARF6 (At1... 113 6e-023
ref|NM_102771.2| Arabidopsis thaliana ARF6 (AUXIN RESPONSE ... 113 6e-023
ref|NM_001036038.1| Arabidopsis thaliana ARF6 (AUXIN RESPON... 113 6e-023
gb|AF042196.1|AF042196 Arabidopsis thaliana auxin response ... 94 6e-017
gb|AY669790.1| Arabidopsis thaliana clone C105345 ARF8 (At5... 94 6e-017
ref|NM_123060.2| Arabidopsis thaliana ARF8 (AUXIN RESPONSE ... 94 6e-017
dbj|AB024026.1| Arabidopsis thaliana genomic DNA, chromosom... 76 1e-011
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 76 1e-011
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 76 1e-011
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 74 5e-011
gb|AC025295.7|AC025295 Arabidopsis thaliana chromosome 1 BA... 74 5e-011
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 74 5e-011
gb|BU635918.1|BU635918 042G09 Infected Arabidopsis Leaf Ara... 64 5e-008
gb|BP561257.2|BP561257 BP561257 RAFL6 Arabidopsis thaliana ... 58 3e-006
gb|AF022368.1|AF022368 Arabidopsis thaliana BIPOSTO (BIP) m... 58 3e-006
gb|AF042195.1|AF042195 Arabidopsis thaliana auxin response ... 58 3e-006
gb|AF186466.1|AF186466 Arabidopsis thaliana non-phototropic... 58 3e-006
gb|AF296832.1|T1M15 Arabidopsis thaliana BAC T1M15 58 3e-006
gb|AY080595.1| Arabidopsis thaliana unknown protein (At5g20... 58 3e-006
emb|AX505548.1| Sequence 243 from Patent WO0216655 58 3e-006
gb|AY008392.1| Arabidopsis thaliana ARF7 (ARF7) gene, compl... 58 3e-006
gb|AY669789.1| Arabidopsis thaliana clone C105344 ARF7 (At5... 58 3e-006
ref|NM_180715.1| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHI... 58 3e-006
ref|NM_180716.1| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHI... 58 3e-006
ref|NM_122080.2| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHI... 58 3e-006
>gb|AV528283.1|AV528283 AV528283 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL05d03R 5', mRNA
sequence
Length = 484
Score = 113 bits (57), Expect = 6e-023
Identities = 288/365 (78%)
Strand = Plus / Plus
Query: 27 tggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgctattcatatgg 86
||||| || ||||| |||||||| || ||||||||||| || ||||| || ||||| |||
Sbjct: 94 tggagcgtatttgtgagtgctaaaaggcttgttgctggtgactctgttcttttcatctgg 153
Query: 87 aatgagaaaaaccagcttttgcttggaatcagacacgctacccggccacagactgtgatg 146
|| || || || || | | ||||| || |||| || | ||| ||||| ||||| |||
Sbjct: 154 aacgataagaatcaattacttcttggtataagacgagccaaccgaccacaaactgtcatg 213
Query: 147 ccctcttctgttctttcgagtgacagcatgcacatcggactccttgcagcagcagctcat 206
|| || |||||| | || |||||||| ||||| | || || ||||| ||||||||||||
Sbjct: 214 ccttcatctgttttgtcaagtgacagtatgcatttaggccttcttgctgcagcagctcat 273
Query: 207 gctgctgcaacaaacagccgcttcacaattttctataatcctagggcaagtccaacagaa 266
||||| || ||||||||||| ||||| || |||||||| || ||||| |||||| ||||
Sbjct: 274 gctgccgctacaaacagccgattcaccatcttctataacccgagggcgagtccatcagag 333
Query: 267 tttgttatacccctttcgaaatacatcaaggctgtttttcacacgcggatatcagttggg 326
|||||||||||||| | || || | || || |||| |||||| || | || |||||
Sbjct: 334 tttgttatacccctggctaagtatgtgaaagcggtttatcacactcgcgtctctgttggt 393
Query: 327 atgcgattcaggatgttatttgagactgaggaatcaagtgtccgcaggtacatggggaca 386
||||| || |||||| | ||||| ||||| ||||| ||||| || |||||||||| |||
Sbjct: 394 atgcggtttaggatgctgtttgaaactgaagaatctagtgttcgtcggtacatgggtaca 453
Query: 387 ataac 391
|||||
Sbjct: 454 ataac 458
>gb|AF013467.1|AF013467 Arabidopsis thaliana ARF6 (ARF6) mRNA, complete cds
Length = 3832
Score = 113 bits (57), Expect = 6e-023
Identities = 288/365 (78%)
Strand = Plus / Plus
Query: 27 tggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgctattcatatgg 86
||||| || ||||| |||||||| || ||||||||||| || ||||| || ||||| |||
Sbjct: 1338 tggagcgtatttgtgagtgctaaaaggcttgttgctggtgactctgttcttttcatctgg 1397
Query: 87 aatgagaaaaaccagcttttgcttggaatcagacacgctacccggccacagactgtgatg 146
|| || || || || | | ||||| || |||| || | ||| ||||| ||||| |||
Sbjct: 1398 aacgataagaatcaattacttcttggtataagacgagccaaccgaccacaaactgtcatg 1457
Query: 147 ccctcttctgttctttcgagtgacagcatgcacatcggactccttgcagcagcagctcat 206
|| || |||||| | || |||||||| ||||| | || || ||||| ||||||||||||
Sbjct: 1458 ccttcatctgttttgtcaagtgacagtatgcatttaggccttcttgctgcagcagctcat 1517
Query: 207 gctgctgcaacaaacagccgcttcacaattttctataatcctagggcaagtccaacagaa 266
||||| || ||||||||||| ||||| || |||||||| || ||||| |||||| ||||
Sbjct: 1518 gctgccgctacaaacagccgattcaccatcttctataacccgagggcgagtccatcagag 1577
Query: 267 tttgttatacccctttcgaaatacatcaaggctgtttttcacacgcggatatcagttggg 326
|||||||||||||| | || || | || || |||| |||||| || | || |||||
Sbjct: 1578 tttgttatacccctggctaagtatgtgaaagcggtttatcacactcgcgtctctgttggt 1637
Query: 327 atgcgattcaggatgttatttgagactgaggaatcaagtgtccgcaggtacatggggaca 386
||||| || |||||| | ||||| ||||| ||||| ||||| || |||||||||| |||
Sbjct: 1638 atgcggtttaggatgctgtttgaaactgaagaatctagtgttcgtcggtacatgggtaca 1697
Query: 387 ataac 391
|||||
Sbjct: 1698 ataac 1702
Score = 50.1 bits (25), Expect = 8e-004
Identities = 88/109 (80%)
Strand = Plus / Plus
Query: 433 attggagatcagtgaaggttggttgggatgaatcaaccgcaggagaaaggccacctagag 492
||||| |||| || |||||||| ||||| ||||| || |||||||| || | || || |
Sbjct: 1744 attggcgatctgtcaaggttgggtgggacgaatctactgcaggagagagacagccaaggg 1803
Query: 493 tttctctgtgggaaattgagccactgacaacctttcctatgtatccatc 541
|||| ||||||| |||||||| | ||||| || ||||||||||||||
Sbjct: 1804 tttcattgtgggagattgagcctttaacaacattccctatgtatccatc 1852
>gb|AY669788.1| Arabidopsis thaliana clone C105343 ARF6 (At1g30330) mRNA, complete
cds
Length = 2839
Score = 113 bits (57), Expect = 6e-023
Identities = 288/365 (78%)
Strand = Plus / Plus
Query: 27 tggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgctattcatatgg 86
||||| || ||||| |||||||| || ||||||||||| || ||||| || ||||| |||
Sbjct: 592 tggagcgtatttgtgagtgctaaaaggcttgttgctggtgactctgttcttttcatctgg 651
Query: 87 aatgagaaaaaccagcttttgcttggaatcagacacgctacccggccacagactgtgatg 146
|| || || || || | | ||||| || |||| || | ||| ||||| ||||| |||
Sbjct: 652 aacgataagaatcaattacttcttggtataagacgagccaaccgaccacaaactgtcatg 711
Query: 147 ccctcttctgttctttcgagtgacagcatgcacatcggactccttgcagcagcagctcat 206
|| || |||||| | || |||||||| ||||| | || || ||||| ||||||||||||
Sbjct: 712 ccttcatctgttttgtcaagtgacagtatgcatttaggccttcttgctgcagcagctcat 771
Query: 207 gctgctgcaacaaacagccgcttcacaattttctataatcctagggcaagtccaacagaa 266
||||| || ||||||||||| ||||| || |||||||| || ||||| |||||| ||||
Sbjct: 772 gctgccgctacaaacagccgattcaccatcttctataacccgagggcgagtccatcagag 831
Query: 267 tttgttatacccctttcgaaatacatcaaggctgtttttcacacgcggatatcagttggg 326
|||||||||||||| | || || | || || |||| |||||| || | || |||||
Sbjct: 832 tttgttatacccctggctaagtatgtgaaagcggtttatcacactcgcgtctctgttggt 891
Query: 327 atgcgattcaggatgttatttgagactgaggaatcaagtgtccgcaggtacatggggaca 386
||||| || |||||| | ||||| ||||| ||||| ||||| || |||||||||| |||
Sbjct: 892 atgcggtttaggatgctgtttgaaactgaagaatctagtgttcgtcggtacatgggtaca 951
Query: 387 ataac 391
|||||
Sbjct: 952 ataac 956
Score = 50.1 bits (25), Expect = 8e-004
Identities = 88/109 (80%)
Strand = Plus / Plus
Query: 433 attggagatcagtgaaggttggttgggatgaatcaaccgcaggagaaaggccacctagag 492
||||| |||| || |||||||| ||||| ||||| || |||||||| || | || || |
Sbjct: 998 attggcgatctgtcaaggttgggtgggacgaatctactgcaggagagagacagccaaggg 1057
Query: 493 tttctctgtgggaaattgagccactgacaacctttcctatgtatccatc 541
|||| ||||||| |||||||| | ||||| || ||||||||||||||
Sbjct: 1058 tttcattgtgggagattgagcctttaacaacattccctatgtatccatc 1106
>ref|NM_102771.2| Arabidopsis thaliana ARF6 (AUXIN RESPONSE FACTOR 6); transcription
factor AT1G30330 (ARF6) transcript variant AT1G30330.1
mRNA, complete cds
Length = 3868
Score = 113 bits (57), Expect = 6e-023
Identities = 288/365 (78%)
Strand = Plus / Plus
Query: 27 tggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgctattcatatgg 86
||||| || ||||| |||||||| || ||||||||||| || ||||| || ||||| |||
Sbjct: 1349 tggagcgtatttgtgagtgctaaaaggcttgttgctggtgactctgttcttttcatctgg 1408
Query: 87 aatgagaaaaaccagcttttgcttggaatcagacacgctacccggccacagactgtgatg 146
|| || || || || | | ||||| || |||| || | ||| ||||| ||||| |||
Sbjct: 1409 aacgataagaatcaattacttcttggtataagacgagccaaccgaccacaaactgtcatg 1468
Query: 147 ccctcttctgttctttcgagtgacagcatgcacatcggactccttgcagcagcagctcat 206
|| || |||||| | || |||||||| ||||| | || || ||||| ||||||||||||
Sbjct: 1469 ccttcatctgttttgtcaagtgacagtatgcatttaggccttcttgctgcagcagctcat 1528
Query: 207 gctgctgcaacaaacagccgcttcacaattttctataatcctagggcaagtccaacagaa 266
||||| || ||||||||||| ||||| || |||||||| || ||||| |||||| ||||
Sbjct: 1529 gctgccgctacaaacagccgattcaccatcttctataacccgagggcgagtccatcagag 1588
Query: 267 tttgttatacccctttcgaaatacatcaaggctgtttttcacacgcggatatcagttggg 326
|||||||||||||| | || || | || || |||| |||||| || | || |||||
Sbjct: 1589 tttgttatacccctggctaagtatgtgaaagcggtttatcacactcgcgtctctgttggt 1648
Query: 327 atgcgattcaggatgttatttgagactgaggaatcaagtgtccgcaggtacatggggaca 386
||||| || |||||| | ||||| ||||| ||||| ||||| || |||||||||| |||
Sbjct: 1649 atgcggtttaggatgctgtttgaaactgaagaatctagtgttcgtcggtacatgggtaca 1708
Query: 387 ataac 391
|||||
Sbjct: 1709 ataac 1713
Score = 50.1 bits (25), Expect = 8e-004
Identities = 88/109 (80%)
Strand = Plus / Plus
Query: 433 attggagatcagtgaaggttggttgggatgaatcaaccgcaggagaaaggccacctagag 492
||||| |||| || |||||||| ||||| ||||| || |||||||| || | || || |
Sbjct: 1755 attggcgatctgtcaaggttgggtgggacgaatctactgcaggagagagacagccaaggg 1814
Query: 493 tttctctgtgggaaattgagccactgacaacctttcctatgtatccatc 541
|||| ||||||| |||||||| | ||||| || ||||||||||||||
Sbjct: 1815 tttcattgtgggagattgagcctttaacaacattccctatgtatccatc 1863
>ref|NM_001036038.1| Arabidopsis thaliana ARF6 (AUXIN RESPONSE FACTOR 6) AT1G30330
(ARF6) transcript variant AT1G30330.2 mRNA, complete cds
Length = 3111
Score = 113 bits (57), Expect = 6e-023
Identities = 288/365 (78%)
Strand = Plus / Plus
Query: 27 tggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgctattcatatgg 86
||||| || ||||| |||||||| || ||||||||||| || ||||| || ||||| |||
Sbjct: 592 tggagcgtatttgtgagtgctaaaaggcttgttgctggtgactctgttcttttcatctgg 651
Query: 87 aatgagaaaaaccagcttttgcttggaatcagacacgctacccggccacagactgtgatg 146
|| || || || || | | ||||| || |||| || | ||| ||||| ||||| |||
Sbjct: 652 aacgataagaatcaattacttcttggtataagacgagccaaccgaccacaaactgtcatg 711
Query: 147 ccctcttctgttctttcgagtgacagcatgcacatcggactccttgcagcagcagctcat 206
|| || |||||| | || |||||||| ||||| | || || ||||| ||||||||||||
Sbjct: 712 ccttcatctgttttgtcaagtgacagtatgcatttaggccttcttgctgcagcagctcat 771
Query: 207 gctgctgcaacaaacagccgcttcacaattttctataatcctagggcaagtccaacagaa 266
||||| || ||||||||||| ||||| || |||||||| || ||||| |||||| ||||
Sbjct: 772 gctgccgctacaaacagccgattcaccatcttctataacccgagggcgagtccatcagag 831
Query: 267 tttgttatacccctttcgaaatacatcaaggctgtttttcacacgcggatatcagttggg 326
|||||||||||||| | || || | || || |||| |||||| || | || |||||
Sbjct: 832 tttgttatacccctggctaagtatgtgaaagcggtttatcacactcgcgtctctgttggt 891
Query: 327 atgcgattcaggatgttatttgagactgaggaatcaagtgtccgcaggtacatggggaca 386
||||| || |||||| | ||||| ||||| ||||| ||||| || |||||||||| |||
Sbjct: 892 atgcggtttaggatgctgtttgaaactgaagaatctagtgttcgtcggtacatgggtaca 951
Query: 387 ataac 391
|||||
Sbjct: 952 ataac 956
Score = 50.1 bits (25), Expect = 8e-004
Identities = 88/109 (80%)
Strand = Plus / Plus
Query: 433 attggagatcagtgaaggttggttgggatgaatcaaccgcaggagaaaggccacctagag 492
||||| |||| || |||||||| ||||| ||||| || |||||||| || | || || |
Sbjct: 998 attggcgatctgtcaaggttgggtgggacgaatctactgcaggagagagacagccaaggg 1057
Query: 493 tttctctgtgggaaattgagccactgacaacctttcctatgtatccatc 541
|||| ||||||| |||||||| | ||||| || ||||||||||||||
Sbjct: 1058 tttcattgtgggagattgagcctttaacaacattccctatgtatccatc 1106
>gb|AF042196.1|AF042196 Arabidopsis thaliana auxin response factor 8 (ARF8) mRNA, complete
cds
Length = 2817
Score = 93.7 bits (47), Expect = 6e-017
Identities = 290/371 (78%)
Strand = Plus / Plus
Query: 21 actggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgctattc 80
||||| |||||||| ||||||||||| ||| |||| || |||||||||||||| | |||
Sbjct: 700 actggatggagtgtctttgtcagtgccaagcgactagtagctggagattctgtcattttc 759
Query: 81 atatggaatgagaaaaaccagcttttgcttggaatcagacacgctacccggccacagact 140
|| ||||||| || || || || || | ||||| | || || || ||||| ||||||
Sbjct: 760 atcaggaatgaaaagaatcaactctttttgggaattcgtcatgccactcggccgcagact 819
Query: 141 gtgatgccctcttctgttctttcgagtgacagcatgcacatcggactccttgcagcagca 200
| | || || |||||| | || ||||| |||||||| || ||||||||||| || ||
Sbjct: 820 attgtaccatcatctgttttatctagtgatagcatgcatattggactccttgctgctgct 879
Query: 201 gctcatgctgctgcaacaaacagccgcttcacaattttctataatcctagggcaagtcca 260
|| |||||| ||||||| || ||| | ||||| |||||| | |||| ||||| || | |
Sbjct: 880 gcacatgcttctgcaactaatagctgtttcactgttttctttcatccaagggctagccaa 939
Query: 261 acagaatttgttatacccctttcgaaatacatcaaggctgtttttcacacgcggatatca 320
| || ||||| |||| ||||| || ||||| || || |||||||||||||| || |||
Sbjct: 940 tctgagtttgtgatacaactttccaagtacattaaagccgtttttcacacgcgtatttca 999
Query: 321 gttgggatgcgattcaggatgttatttgagactgaggaatcaagtgtccgcaggtacatg 380
||||||||||| || | ||| | || ||||| || || || ||||||||||||||||||
Sbjct: 1000 gttgggatgcgctttcgcatgctcttcgagacagaagagtcgagtgtccgcaggtacatg 1059
Query: 381 gggacaataac 391
|| || |||||
Sbjct: 1060 ggtactataac 1070
Score = 89.7 bits (45), Expect = 9e-016
Identities = 93/109 (85%)
Strand = Plus / Plus
Query: 433 attggagatcagtgaaggttggttgggatgaatcaaccgcaggagaaaggccacctagag 492
||||| |||| ||||||||||||||||||||||| || ||||| || || | || || |
Sbjct: 1112 attggcgatctgtgaaggttggttgggatgaatcgactgcaggggagagacagccaaggg 1171
Query: 493 tttctctgtgggaaattgagccactgacaacctttcctatgtatccatc 541
||||| | ||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 1172 tttctttatgggagattgagcctctgactacctttcctatgtatccatc 1220
>gb|AY669790.1| Arabidopsis thaliana clone C105345 ARF8 (At5g37020) mRNA, complete
cds
Length = 2467
Score = 93.7 bits (47), Expect = 6e-017
Identities = 290/371 (78%)
Strand = Plus / Plus
Query: 21 actggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgctattc 80
||||| |||||||| ||||||||||| ||| |||| || |||||||||||||| | |||
Sbjct: 577 actggatggagtgtctttgtcagtgccaagcgactagtagctggagattctgtcattttc 636
Query: 81 atatggaatgagaaaaaccagcttttgcttggaatcagacacgctacccggccacagact 140
|| ||||||| || || || || || | ||||| | || || || ||||| ||||||
Sbjct: 637 atcaggaatgaaaagaatcaactctttttgggaattcgtcatgccactcggccgcagact 696
Query: 141 gtgatgccctcttctgttctttcgagtgacagcatgcacatcggactccttgcagcagca 200
| | || || |||||| | || ||||| |||||||| || ||||||||||| || ||
Sbjct: 697 attgtaccatcatctgttttatctagtgatagcatgcatattggactccttgctgctgct 756
Query: 201 gctcatgctgctgcaacaaacagccgcttcacaattttctataatcctagggcaagtcca 260
|| |||||| ||||||| || ||| | ||||| |||||| | |||| ||||| || | |
Sbjct: 757 gcacatgcttctgcaactaatagctgtttcactgttttctttcatccaagggctagccaa 816
Query: 261 acagaatttgttatacccctttcgaaatacatcaaggctgtttttcacacgcggatatca 320
| || ||||| |||| ||||| || ||||| || || |||||||||||||| || |||
Sbjct: 817 tctgagtttgtgatacaactttccaagtacattaaagccgtttttcacacgcgtatttca 876
Query: 321 gttgggatgcgattcaggatgttatttgagactgaggaatcaagtgtccgcaggtacatg 380
||||||||||| || | ||| | || ||||| || || || ||||||||||||||||||
Sbjct: 877 gttgggatgcgctttcgcatgctcttcgagacagaagagtcgagtgtccgcaggtacatg 936
Query: 381 gggacaataac 391
|| || |||||
Sbjct: 937 ggtactataac 947
Score = 89.7 bits (45), Expect = 9e-016
Identities = 93/109 (85%)
Strand = Plus / Plus
Query: 433 attggagatcagtgaaggttggttgggatgaatcaaccgcaggagaaaggccacctagag 492
||||| |||| ||||||||||||||||||||||| || ||||| || || | || || |
Sbjct: 989 attggcgatctgtgaaggttggttgggatgaatcgactgcaggggagagacagccaaggg 1048
Query: 493 tttctctgtgggaaattgagccactgacaacctttcctatgtatccatc 541
||||| | ||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 1049 tttctttatgggagattgagcctctgactacctttcctatgtatccatc 1097
>ref|NM_123060.2| Arabidopsis thaliana ARF8 (AUXIN RESPONSE FACTOR 8); transcription
factor AT5G37020 (ARF8) mRNA, complete cds
Length = 2840
Score = 93.7 bits (47), Expect = 6e-017
Identities = 290/371 (78%)
Strand = Plus / Plus
Query: 21 actggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgtgctattc 80
||||| |||||||| ||||||||||| ||| |||| || |||||||||||||| | |||
Sbjct: 700 actggatggagtgtctttgtcagtgccaagcgactagtagctggagattctgtcattttc 759
Query: 81 atatggaatgagaaaaaccagcttttgcttggaatcagacacgctacccggccacagact 140
|| ||||||| || || || || || | ||||| | || || || ||||| ||||||
Sbjct: 760 atcaggaatgaaaagaatcaactctttttgggaattcgtcatgccactcggccgcagact 819
Query: 141 gtgatgccctcttctgttctttcgagtgacagcatgcacatcggactccttgcagcagca 200
| | || || |||||| | || ||||| |||||||| || ||||||||||| || ||
Sbjct: 820 attgtaccatcatctgttttatctagtgatagcatgcatattggactccttgctgctgct 879
Query: 201 gctcatgctgctgcaacaaacagccgcttcacaattttctataatcctagggcaagtcca 260
|| |||||| ||||||| || ||| | ||||| |||||| | |||| ||||| || | |
Sbjct: 880 gcacatgcttctgcaactaatagctgtttcactgttttctttcatccaagggctagccaa 939
Query: 261 acagaatttgttatacccctttcgaaatacatcaaggctgtttttcacacgcggatatca 320
| || ||||| |||| ||||| || ||||| || || |||||||||||||| || |||
Sbjct: 940 tctgagtttgtgatacaactttccaagtacattaaagccgtttttcacacgcgtatttca 999
Query: 321 gttgggatgcgattcaggatgttatttgagactgaggaatcaagtgtccgcaggtacatg 380
||||||||||| || | ||| | || ||||| || || || ||||||||||||||||||
Sbjct: 1000 gttgggatgcgctttcgcatgctcttcgagacagaagagtcgagtgtccgcaggtacatg 1059
Query: 381 gggacaataac 391
|| || |||||
Sbjct: 1060 ggtactataac 1070
Score = 89.7 bits (45), Expect = 9e-016
Identities = 93/109 (85%)
Strand = Plus / Plus
Query: 433 attggagatcagtgaaggttggttgggatgaatcaaccgcaggagaaaggccacctagag 492
||||| |||| ||||||||||||||||||||||| || ||||| || || | || || |
Sbjct: 1112 attggcgatctgtgaaggttggttgggatgaatcgactgcaggggagagacagccaaggg 1171
Query: 493 tttctctgtgggaaattgagccactgacaacctttcctatgtatccatc 541
||||| | ||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 1172 tttctttatgggagattgagcctctgactacctttcctatgtatccatc 1220
>dbj|AB024026.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15O15
Length = 23026
Score = 75.8 bits (38), Expect = 1e-011
Identities = 80/94 (85%)
Strand = Plus / Plus
Query: 448 aggttggttgggatgaatcaaccgcaggagaaaggccacctagagtttctctgtgggaaa 507
||||||||||||||||||| || ||||| || || | || || |||||| | ||||| |
Sbjct: 17154 aggttggttgggatgaatcgactgcaggggagagacagccaagggtttctttatgggaga 17213
Query: 508 ttgagccactgacaacctttcctatgtatccatc 541
||||||| ||||| ||||||||||||||||||||
Sbjct: 17214 ttgagcctctgactacctttcctatgtatccatc 17247
Score = 58.0 bits (29), Expect = 3e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 21 actggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgt 73
||||| |||||||| ||||||||||| ||| |||| || ||||||||||||||
Sbjct: 16332 actggatggagtgtctttgtcagtgccaagcgactagtagctggagattctgt 16384
Score = 50.1 bits (25), Expect = 8e-004
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 279 ctttcgaaatacatcaaggctgtttttcacacgcggatatcagttgggatgcgattcagg 338
||||| || ||||| || || |||||||||||||| || |||||||||||||| || |
Sbjct: 16745 ctttccaagtacattaaagccgtttttcacacgcgtatttcagttgggatgcgctttcgc 16804
Query: 339 atgttatttgagactgaggaatcaagtgtccgcaggt 375
||| | || ||||| || || || |||||||||||||
Sbjct: 16805 atgctcttcgagacagaagagtcgagtgtccgcaggt 16841
Score = 42.1 bits (21), Expect = 0.19
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgctgctgcaac 217
||||| |||||||| || ||||||||||| || || || |||||| |||||||
Sbjct: 16547 agtgatagcatgcatattggactccttgctgctgctgcacatgcttctgcaac 16599
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 75.8 bits (38), Expect = 1e-011
Identities = 80/94 (85%)
Strand = Plus / Plus
Query: 448 aggttggttgggatgaatcaaccgcaggagaaaggccacctagagtttctctgtgggaaa 507
||||||||||||||||||| || ||||| || || | || || |||||| | ||||| |
Sbjct: 13545653 aggttggttgggatgaatcgactgcaggggagagacagccaagggtttctttatgggaga 13545712
Query: 508 ttgagccactgacaacctttcctatgtatccatc 541
||||||| ||||| ||||||||||||||||||||
Sbjct: 13545713 ttgagcctctgactacctttcctatgtatccatc 13545746
Score = 58.0 bits (29), Expect = 3e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 21 actggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgt 73
||||| |||||||| ||||||||||| ||| |||| || ||||||||||||||
Sbjct: 13544831 actggatggagtgtctttgtcagtgccaagcgactagtagctggagattctgt 13544883
Score = 58.0 bits (29), Expect = 3e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgct 209
||||| ||||||||||||||| | |||||||| ||||||||||||
Sbjct: 6732441 agtgatagcatgcacatcggagttcttgcagctgcagctcatgct 6732397
Score = 50.1 bits (25), Expect = 8e-004
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 279 ctttcgaaatacatcaaggctgtttttcacacgcggatatcagttgggatgcgattcagg 338
||||| || ||||| || || |||||||||||||| || |||||||||||||| || |
Sbjct: 13545244 ctttccaagtacattaaagccgtttttcacacgcgtatttcagttgggatgcgctttcgc 13545303
Query: 339 atgttatttgagactgaggaatcaagtgtccgcaggt 375
||| | || ||||| || || || |||||||||||||
Sbjct: 13545304 atgctcttcgagacagaagagtcgagtgtccgcaggt 13545340
Score = 42.1 bits (21), Expect = 0.19
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgctgctgcaac 217
||||| |||||||| || ||||||||||| || || || |||||| |||||||
Sbjct: 13545046 agtgatagcatgcatattggactccttgctgctgctgcacatgcttctgcaac 13545098
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 75.8 bits (38), Expect = 1e-011
Identities = 80/94 (85%)
Strand = Plus / Plus
Query: 448 aggttggttgggatgaatcaaccgcaggagaaaggccacctagagtttctctgtgggaaa 507
||||||||||||||||||| || ||||| || || | || || |||||| | ||||| |
Sbjct: 14649508 aggttggttgggatgaatcgactgcaggggagagacagccaagggtttctttatgggaga 14649567
Query: 508 ttgagccactgacaacctttcctatgtatccatc 541
||||||| ||||| ||||||||||||||||||||
Sbjct: 14649568 ttgagcctctgactacctttcctatgtatccatc 14649601
Score = 58.0 bits (29), Expect = 3e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 21 actggctggagtgtgtttgtcagtgctaagagacttgttgctggagattctgt 73
||||| |||||||| ||||||||||| ||| |||| || ||||||||||||||
Sbjct: 14648686 actggatggagtgtctttgtcagtgccaagcgactagtagctggagattctgt 14648738
Score = 58.0 bits (29), Expect = 3e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgct 209
||||| ||||||||||||||| | |||||||| ||||||||||||
Sbjct: 7019911 agtgatagcatgcacatcggagttcttgcagctgcagctcatgct 7019867
Score = 50.1 bits (25), Expect = 8e-004
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 279 ctttcgaaatacatcaaggctgtttttcacacgcggatatcagttgggatgcgattcagg 338
||||| || ||||| || || |||||||||||||| || |||||||||||||| || |
Sbjct: 14649099 ctttccaagtacattaaagccgtttttcacacgcgtatttcagttgggatgcgctttcgc 14649158
Query: 339 atgttatttgagactgaggaatcaagtgtccgcaggt 375
||| | || ||||| || || || |||||||||||||
Sbjct: 14649159 atgctcttcgagacagaagagtcgagtgtccgcaggt 14649195
Score = 42.1 bits (21), Expect = 0.19
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgctgctgcaac 217
||||| |||||||| || ||||||||||| || || || |||||| |||||||
Sbjct: 14648901 agtgatagcatgcatattggactccttgctgctgctgcacatgcttctgcaac 14648953
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 73.8 bits (37), Expect = 5e-011
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 132 ccacagactgtgatgccctcttctgttctttcgagtgacagcatgcacatcggactcctt 191
||||| ||||| ||||| || |||||| | || |||||||| ||||| | || || |||
Sbjct: 10697516 ccacaaactgtcatgccttcatctgttttgtcaagtgacagtatgcatttaggccttctt 10697457
Query: 192 gcagcagcagctcatgctgctgcaacaaacagccgcttcacaattttctataa 244
|| ||||||||||||||||| || ||||||||||| ||||| || ||||||||
Sbjct: 10697456 gctgcagcagctcatgctgccgctacaaacagccgattcaccatcttctataa 10697404
Score = 44.1 bits (22), Expect = 0.047
Identities = 76/94 (80%)
Strand = Plus / Minus
Query: 448 aggttggttgggatgaatcaaccgcaggagaaaggccacctagagtttctctgtgggaaa 507
||||||| ||||| ||||| || |||||||| || | || || ||||| ||||||| |
Sbjct: 10696947 aggttgggtgggacgaatctactgcaggagagagacagccaagggtttcattgtgggaga 10696888
Query: 508 ttgagccactgacaacctttcctatgtatccatc 541
||||||| | ||||| || ||||||||||||||
Sbjct: 10696887 ttgagcctttaacaacattccctatgtatccatc 10696854
>gb|AC025295.7|AC025295 Arabidopsis thaliana chromosome 1 BAC T4K22 genomic sequence, complete
sequence
Length = 82281
Score = 73.8 bits (37), Expect = 5e-011
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 132 ccacagactgtgatgccctcttctgttctttcgagtgacagcatgcacatcggactcctt 191
||||| ||||| ||||| || |||||| | || |||||||| ||||| | || || |||
Sbjct: 68151 ccacaaactgtcatgccttcatctgttttgtcaagtgacagtatgcatttaggccttctt 68210
Query: 192 gcagcagcagctcatgctgctgcaacaaacagccgcttcacaattttctataa 244
|| ||||||||||||||||| || ||||||||||| ||||| || ||||||||
Sbjct: 68211 gctgcagcagctcatgctgccgctacaaacagccgattcaccatcttctataa 68263
Score = 44.1 bits (22), Expect = 0.047
Identities = 76/94 (80%)
Strand = Plus / Plus
Query: 448 aggttggttgggatgaatcaaccgcaggagaaaggccacctagagtttctctgtgggaaa 507
||||||| ||||| ||||| || |||||||| || | || || ||||| ||||||| |
Sbjct: 68720 aggttgggtgggacgaatctactgcaggagagagacagccaagggtttcattgtgggaga 68779
Query: 508 ttgagccactgacaacctttcctatgtatccatc 541
||||||| | ||||| || ||||||||||||||
Sbjct: 68780 ttgagcctttaacaacattccctatgtatccatc 68813
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 73.8 bits (37), Expect = 5e-011
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 132 ccacagactgtgatgccctcttctgttctttcgagtgacagcatgcacatcggactcctt 191
||||| ||||| ||||| || |||||| | || |||||||| ||||| | || || |||
Sbjct: 10688718 ccacaaactgtcatgccttcatctgttttgtcaagtgacagtatgcatttaggccttctt 10688659
Query: 192 gcagcagcagctcatgctgctgcaacaaacagccgcttcacaattttctataa 244
|| ||||||||||||||||| || ||||||||||| ||||| || ||||||||
Sbjct: 10688658 gctgcagcagctcatgctgccgctacaaacagccgattcaccatcttctataa 10688606
Score = 44.1 bits (22), Expect = 0.047
Identities = 76/94 (80%)
Strand = Plus / Minus
Query: 448 aggttggttgggatgaatcaaccgcaggagaaaggccacctagagtttctctgtgggaaa 507
||||||| ||||| ||||| || |||||||| || | || || ||||| ||||||| |
Sbjct: 10688149 aggttgggtgggacgaatctactgcaggagagagacagccaagggtttcattgtgggaga 10688090
Query: 508 ttgagccactgacaacctttcctatgtatccatc 541
||||||| | ||||| || ||||||||||||||
Sbjct: 10688089 ttgagcctttaacaacattccctatgtatccatc 10688056
>gb|BU635918.1|BU635918 042G09 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 573
Score = 63.9 bits (32), Expect = 5e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 189 cttgcagcagcagctcatgctgctgcaacaaacagccgcttcacaattttctataa 244
||||| ||||||||||||||||| || ||||||||||| ||||| || ||||||||
Sbjct: 22 cttgctgcagcagctcatgctgccgctacaaacagccgattcaccatcttctataa 77
>gb|BP561257.2|BP561257 BP561257 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-71-I22 5',
mRNA sequence
Length = 572
Score = 58.0 bits (29), Expect = 3e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgct 209
||||| ||||||||||||||| | |||||||| ||||||||||||
Sbjct: 368 agtgatagcatgcacatcggagttcttgcagctgcagctcatgct 412
>gb|AF022368.1|AF022368 Arabidopsis thaliana BIPOSTO (BIP) mRNA, complete cds
Length = 4341
Score = 58.0 bits (29), Expect = 3e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgct 209
||||| ||||||||||||||| | |||||||| ||||||||||||
Sbjct: 1333 agtgatagcatgcacatcggagttcttgcagctgcagctcatgct 1377
>gb|AF042195.1|AF042195 Arabidopsis thaliana auxin response factor 7 (ARF7) mRNA, complete
cds
Length = 4044
Score = 58.0 bits (29), Expect = 3e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgct 209
||||| ||||||||||||||| | |||||||| ||||||||||||
Sbjct: 1262 agtgatagcatgcacatcggagttcttgcagctgcagctcatgct 1306
>gb|AF186466.1|AF186466 Arabidopsis thaliana non-phototropic hypocotyl 4 (NPH4) gene,
complete cds
Length = 7317
Score = 58.0 bits (29), Expect = 3e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgct 209
||||| ||||||||||||||| | |||||||| ||||||||||||
Sbjct: 3890 agtgatagcatgcacatcggagttcttgcagctgcagctcatgct 3934
>gb|AF296832.1|T1M15 Arabidopsis thaliana BAC T1M15
Length = 89490
Score = 58.0 bits (29), Expect = 3e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgct 209
||||| ||||||||||||||| | |||||||| ||||||||||||
Sbjct: 52891 agtgatagcatgcacatcggagttcttgcagctgcagctcatgct 52847
>gb|AY080595.1| Arabidopsis thaliana unknown protein (At5g20730) mRNA, partial cds
Length = 3413
Score = 58.0 bits (29), Expect = 3e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgct 209
||||| ||||||||||||||| | |||||||| ||||||||||||
Sbjct: 367 agtgatagcatgcacatcggagttcttgcagctgcagctcatgct 411
>emb|AX505548.1| Sequence 243 from Patent WO0216655
Length = 3150
Score = 58.0 bits (29), Expect = 3e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgct 209
||||| ||||||||||||||| | |||||||| ||||||||||||
Sbjct: 721 agtgatagcatgcacatcggagttcttgcagctgcagctcatgct 765
>gb|AY008392.1| Arabidopsis thaliana ARF7 (ARF7) gene, complete cds
Length = 7703
Score = 58.0 bits (29), Expect = 3e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgct 209
||||| ||||||||||||||| | |||||||| ||||||||||||
Sbjct: 3895 agtgatagcatgcacatcggagttcttgcagctgcagctcatgct 3939
>gb|AY669789.1| Arabidopsis thaliana clone C105344 ARF7 (At5g20730) mRNA, complete
cds
Length = 3526
Score = 58.0 bits (29), Expect = 3e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgct 209
||||| ||||||||||||||| | |||||||| ||||||||||||
Sbjct: 724 agtgatagcatgcacatcggagttcttgcagctgcagctcatgct 768
>ref|NM_180715.1| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); transcription
factor AT5G20730 (NPH4) transcript variant AT5G20730.1
mRNA, complete cds
Length = 4341
Score = 58.0 bits (29), Expect = 3e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgct 209
||||| ||||||||||||||| | |||||||| ||||||||||||
Sbjct: 1333 agtgatagcatgcacatcggagttcttgcagctgcagctcatgct 1377
>ref|NM_180716.1| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); transcription
factor AT5G20730 (NPH4) transcript variant AT5G20730.2
mRNA, complete cds
Length = 4557
Score = 58.0 bits (29), Expect = 3e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgct 209
||||| ||||||||||||||| | |||||||| ||||||||||||
Sbjct: 1262 agtgatagcatgcacatcggagttcttgcagctgcagctcatgct 1306
>ref|NM_122080.2| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); transcription
factor AT5G20730 (NPH4) transcript variant AT5G20730.3
mRNA, complete cds
Length = 4296
Score = 58.0 bits (29), Expect = 3e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 165 agtgacagcatgcacatcggactccttgcagcagcagctcatgct 209
||||| ||||||||||||||| | |||||||| ||||||||||||
Sbjct: 1333 agtgatagcatgcacatcggagttcttgcagctgcagctcatgct 1377
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 474,662
Number of Sequences: 1013581
Number of extensions: 474662
Number of successful extensions: 34163
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33190
Number of HSP's gapped (non-prelim): 964
length of query: 1029
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1009
effective length of database: 888,669,252
effective search space: 896667275268
effective search space used: 896667275268
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)