BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2969912.2.1
         (507 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CL477316.1|CL477316  SAIL_26_H10.v1 SAIL Collection Arabi...    40   0.36 
gb|CL512128.1|CL512128  SAIL_856_H02.v1 SAIL Collection Arab...    40   0.36 
gb|BP839378.1|BP839378  BP839378 RAFL19 Arabidopsis thaliana...    40   0.36 

>gb|CL477316.1|CL477316 SAIL_26_H10.v1 SAIL Collection Arabidopsis thaliana genomic clone
           SAIL_26_H10.v1, DNA sequence
          Length = 1052

 Score = 40.1 bits (20), Expect = 0.36
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 43  gcggcctcctcggccgcggc 62
           ||||||||||||||||||||
Sbjct: 385 gcggcctcctcggccgcggc 404



>gb|CL512128.1|CL512128 SAIL_856_H02.v1 SAIL Collection Arabidopsis thaliana genomic clone
           SAIL_856_H02.v1, DNA sequence
          Length = 894

 Score = 40.1 bits (20), Expect = 0.36
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 134 cggcgccggcgccggccgcc 153
           ||||||||||||||||||||
Sbjct: 757 cggcgccggcgccggccgcc 776



>gb|BP839378.1|BP839378 BP839378 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-26-N20 5',
           mRNA sequence
          Length = 376

 Score = 40.1 bits (20), Expect = 0.36
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 213 tgctcgggcgtcttccacctcgcgtcac 240
           ||||||||||| ||||||||||| ||||
Sbjct: 285 tgctcgggcgtattccacctcgcatcac 312



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 112,128
Number of Sequences: 1013581
Number of extensions: 112128
Number of successful extensions: 8002
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7997
Number of HSP's gapped (non-prelim): 5
length of query: 507
length of database: 908,940,872
effective HSP length: 20
effective length of query: 487
effective length of database: 888,669,252
effective search space: 432781925724
effective search space used: 432781925724
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)