BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950292.2.1
(1205 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI994765.1|AI994765 701499621 A. thaliana, Ohio State cl... 76 2e-011
gb|AV821307.1|AV821307 AV821307 RAFL3 Arabidopsis thaliana ... 56 1e-005
gb|BE037686.1|BE037686 AA02G05 AA Arabidopsis thaliana cDNA... 54 6e-005
gb|AV781680.1|AV781680 AV781680 RAFL3 Arabidopsis thaliana ... 54 6e-005
gb|AF378872.1|AF378872 Arabidopsis thaliana At2g15240/F15A2... 54 6e-005
gb|AY052736.1| Arabidopsis thaliana At2g15240/F15A23.2 mRNA... 54 6e-005
emb|AX505576.1| Sequence 271 from Patent WO0216655 54 6e-005
gb|AY084886.1| Arabidopsis thaliana clone 120231 mRNA, comp... 54 6e-005
emb|BX820218.1|CNS0AA37 Arabidopsis thaliana Full-length cD... 54 6e-005
ref|NM_127085.3| Arabidopsis thaliana unknown protein AT2G1... 54 6e-005
gb|T22013.1|T22013 4021 Lambda-PRL2 Arabidopsis thaliana cD... 50 0.001
gb|AV441458.1|AV441458 AV441458 Arabidopsis thaliana above-... 50 0.001
gb|AV561346.1|AV561346 AV561346 Arabidopsis thaliana green ... 50 0.001
gb|CF773763.1|CF773763 AG_FSL_22C10 Arabidopsis ag-1 35S:AG... 50 0.001
gb|CL462262.1|CL462262 SAIL_1161_A09.v1 SAIL Collection Ara... 42 0.22
>gb|AI994765.1|AI994765 701499621 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701499621, mRNA sequence
Length = 387
Score = 75.8 bits (38), Expect = 2e-011
Identities = 119/146 (81%)
Strand = Plus / Plus
Query: 173 atcgtcaagtggcaacaaagggatattgaatacacattttggcaaatggttcatctctgt 232
||||| |||||||| |||| |||| ||||||| || || ||||||||| || | || |||
Sbjct: 127 atcgttaagtggcagcaaatggatgttgaatatactttctggcaaatgcttaacctttgt 186
Query: 233 acttcaccaaaagtagtctatcagcacaccaaatatcacaagcaaacaaagaaccagtgg 292
|| || || |||| |||||||| ||||| || | |||||| || || |||||||| |||
Sbjct: 187 acatctccggaagttgtctatcaacacactaagtctcacaaacatactaagaaccaatgg 246
Query: 293 gcccgtgatgatcctgcatttgttgt 318
|| |||||||||||||| ||| ||||
Sbjct: 247 gcacgtgatgatcctgcgtttattgt 272
>gb|AV821307.1|AV821307 AV821307 RAFL3 Arabidopsis thaliana cDNA clone RAFL03-07-C10 5',
mRNA sequence
Length = 724
Score = 56.0 bits (28), Expect = 1e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| ||||| || || |||||||| || ||||| ||| ||||||| ||||| || |||
Sbjct: 489 aacagtcatgtggtggaacaacgcgttgaatggctntatacatttgatgttcactgcaac 548
Query: 557 tcgttctttcc 567
|||||||||||
Sbjct: 549 tcgttctttcc 559
>gb|BE037686.1|BE037686 AA02G05 AA Arabidopsis thaliana cDNA 5', mRNA sequence
Length = 724
Score = 54.0 bits (27), Expect = 6e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| ||||| || || |||||||| || ||||| ||| ||||||| ||||| || |||
Sbjct: 496 aacagtcatgtggtggaacaacgcgttgaatggctgtatacatttgatgttcactgcaac 555
Query: 557 tcgttctttcc 567
|||||||||||
Sbjct: 556 tcgttctttcc 566
>gb|AV781680.1|AV781680 AV781680 RAFL3 Arabidopsis thaliana cDNA clone RAFL03-07-C10 3',
mRNA sequence
Length = 707
Score = 54.0 bits (27), Expect = 6e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| ||||| || || |||||||| || ||||| ||| ||||||| ||||| || |||
Sbjct: 669 aacagtcatgtggtggaacaacgcgttgaatggctgtatacatttgatgttcactgcaac 610
Query: 557 tcgttctttcc 567
|||||||||||
Sbjct: 609 tcgttctttcc 599
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 692 aactttctaggatatgatgttcttccatttctagatagaacaacattcttcct 744
||||| ||||||||||| || ||||||||| | || ||||||||||||||||
Sbjct: 474 aacttcctaggatatgacgtgcttccatttttggagcgaacaacattcttcct 422
>gb|AF378872.1|AF378872 Arabidopsis thaliana At2g15240/F15A23.2 mRNA, complete cds
Length = 1155
Score = 54.0 bits (27), Expect = 6e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| ||||| || || |||||||| || ||||| ||| ||||||| ||||| || |||
Sbjct: 488 aacagtcatgtggtggaacaacgcgttgaatggctgtatacatttgatgttcactgcaac 547
Query: 557 tcgttctttcc 567
|||||||||||
Sbjct: 548 tcgttctttcc 558
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 692 aactttctaggatatgatgttcttccatttctagatagaacaacattcttcct 744
||||| ||||||||||| || ||||||||| | || ||||||||||||||||
Sbjct: 683 aacttcctaggatatgacgtgcttccatttttggagcgaacaacattcttcct 735
>gb|AY052736.1| Arabidopsis thaliana At2g15240/F15A23.2 mRNA, complete cds
Length = 759
Score = 54.0 bits (27), Expect = 6e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| ||||| || || |||||||| || ||||| ||| ||||||| ||||| || |||
Sbjct: 409 aacagtcatgtggtggaacaacgcgttgaatggctgtatacatttgatgttcactgcaac 468
Query: 557 tcgttctttcc 567
|||||||||||
Sbjct: 469 tcgttctttcc 479
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 692 aactttctaggatatgatgttcttccatttctagatagaacaacattcttcct 744
||||| ||||||||||| || ||||||||| | || ||||||||||||||||
Sbjct: 604 aacttcctaggatatgacgtgcttccatttttggagcgaacaacattcttcct 656
>emb|AX505576.1| Sequence 271 from Patent WO0216655
Length = 972
Score = 54.0 bits (27), Expect = 6e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| ||||| || || |||||||| || ||||| ||| ||||||| ||||| || |||
Sbjct: 409 aacagtcatgtggtggaacaacgcgttgaatggctgtatacatttgatgttcactgcaac 468
Query: 557 tcgttctttcc 567
|||||||||||
Sbjct: 469 tcgttctttcc 479
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 692 aactttctaggatatgatgttcttccatttctagatagaacaacattcttcct 744
||||| ||||||||||| || ||||||||| | || ||||||||||||||||
Sbjct: 604 aacttcctaggatatgacgtgcttccatttttggagcgaacaacattcttcct 656
>gb|AY084886.1| Arabidopsis thaliana clone 120231 mRNA, complete sequence
Length = 1236
Score = 54.0 bits (27), Expect = 6e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| ||||| || || |||||||| || ||||| ||| ||||||| ||||| || |||
Sbjct: 487 aacagtcatgtggtggaacaacgcgttgaatggctgtatacatttgatgttcactgcaac 546
Query: 557 tcgttctttcc 567
|||||||||||
Sbjct: 547 tcgttctttcc 557
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 692 aactttctaggatatgatgttcttccatttctagatagaacaacattcttcct 744
||||| ||||||||||| || ||||||||| | || ||||||||||||||||
Sbjct: 682 aacttcctaggatatgacgtgcttccatttttggagcgaacaacattcttcct 734
>emb|BX820218.1|CNS0AA37 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS95ZC04 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1312
Score = 54.0 bits (27), Expect = 6e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| ||||| || || |||||||| || ||||| ||| ||||||| ||||| || |||
Sbjct: 510 aacagtcatgtggtggaacaacgcgttgaatggctgtatacatttgatgttcactgcaac 569
Query: 557 tcgttctttcc 567
|||||||||||
Sbjct: 570 tcgttctttcc 580
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 692 aactttctaggatatgatgttcttccatttctagatagaacaacattcttcct 744
||||| ||||||||||| || ||||||||| | || ||||||||||||||||
Sbjct: 705 aacttcctaggatatgacgtgcttccatttttggagcgaacaacattcttcct 757
>ref|NM_127085.3| Arabidopsis thaliana unknown protein AT2G15240 mRNA, complete cds
Length = 1315
Score = 54.0 bits (27), Expect = 6e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 497 aacagccatgttgttgagcaacgcgtggagtggctctatgcatttgacgttcattgtaac 556
||||| ||||| || || |||||||| || ||||| ||| ||||||| ||||| || |||
Sbjct: 510 aacagtcatgtggtggaacaacgcgttgaatggctgtatacatttgatgttcactgcaac 569
Query: 557 tcgttctttcc 567
|||||||||||
Sbjct: 570 tcgttctttcc 580
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 692 aactttctaggatatgatgttcttccatttctagatagaacaacattcttcct 744
||||| ||||||||||| || ||||||||| | || ||||||||||||||||
Sbjct: 705 aacttcctaggatatgacgtgcttccatttttggagcgaacaacattcttcct 757
>gb|T22013.1|T22013 4021 Lambda-PRL2 Arabidopsis thaliana cDNA clone 104P20T7, mRNA
sequence
Length = 524
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 692 aactttctaggatatgatgttcttccatttctagatagaacaacattcttcct 744
||||| ||||||||||| || ||||||||| | || ||||||||||||||||
Sbjct: 145 aacttcctaggatatgacgtgcttccatttttggagcgaacaacattcttcct 197
>gb|AV441458.1|AV441458 AV441458 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APZ57h03_f 3', mRNA
sequence
Length = 550
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 692 aactttctaggatatgatgttcttccatttctagatagaacaacattcttcct 744
||||| ||||||||||| || ||||||||| | || ||||||||||||||||
Sbjct: 391 aacttcctaggatatgacgtgcttccatttttggagcgaacaacattcttcct 339
>gb|AV561346.1|AV561346 AV561346 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ149g12F 3', mRNA sequence
Length = 490
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 692 aactttctaggatatgatgttcttccatttctagatagaacaacattcttcct 744
||||| ||||||||||| || ||||||||| | || ||||||||||||||||
Sbjct: 388 aacttcctaggatatgacgtgcttccatttttggagcgaacaacattcttcct 336
>gb|CF773763.1|CF773763 AG_FSL_22C10 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 22C10, mRNA sequence
Length = 150
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 692 aactttctaggatatgatgttcttccatttctagatagaacaacattcttcct 744
||||| ||||||||||| || ||||||||| | || ||||||||||||||||
Sbjct: 136 aacttcctaggatatgacgtgcttccatttttggagcgaacaacattcttcct 84
>gb|CL462262.1|CL462262 SAIL_1161_A09.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_1161_A09.v1, DNA sequence
Length = 906
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 126 ggcctcccgctccgcccgggg 146
|||||||||||||||||||||
Sbjct: 592 ggcctcccgctccgcccgggg 612
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 628,967
Number of Sequences: 1013581
Number of extensions: 628967
Number of successful extensions: 44196
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44170
Number of HSP's gapped (non-prelim): 26
length of query: 1205
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1185
effective length of database: 888,669,252
effective search space: 1053073063620
effective search space used: 1053073063620
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)