BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950290.2.1
(1442 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB252130.1|CB252130 34-E012994-019-004-D09-SP6r MPIZ-ADI... 48 0.004
gb|CB252133.1|CB252133 34-E012999-019-004-D09-T7R MPIZ-ADIS... 48 0.004
gb|AY050813.1| Arabidopsis thaliana putative P-protein: cho... 48 0.004
gb|AY113967.1| Arabidopsis thaliana putative P-protein (At3... 48 0.004
gb|AY084830.1| Arabidopsis thaliana clone 118932 mRNA, comp... 48 0.004
emb|BX822651.1|CNS0A5XJ Arabidopsis thaliana Full-length cD... 48 0.004
ref|NM_111642.2| Arabidopsis thaliana amino acid binding / ... 48 0.004
ref|NM_202520.1| Arabidopsis thaliana amino acid binding / ... 48 0.004
gb|N96431.1|N96431 21010 CD4-14 Arabidopsis thaliana cDNA c... 46 0.017
gb|AI995548.1|AI995548 701674595 A. thaliana, Columbia Col-... 46 0.017
gb|AV826197.1|AV826197 AV826197 RAFL8 Arabidopsis thaliana ... 46 0.017
gb|AV556099.1|AV556099 AV556099 Arabidopsis thaliana green ... 46 0.017
gb|AC009176.5|ATAC009176 Arabidopsis thaliana chromosome II... 46 0.017
emb|BX825513.1|CNS0A4ZF Arabidopsis thaliana Full-length cD... 46 0.017
emb|BX823962.1|CNS0A5OT Arabidopsis thaliana Full-length cD... 46 0.017
emb|BX822781.1|CNS0A64W Arabidopsis thaliana Full-length cD... 46 0.017
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 46 0.017
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 46 0.017
gb|CL470317.1|CL470317 SAIL_140_A11.v1 SAIL Collection Arab... 44 0.067
>gb|CB252130.1|CB252130 34-E012994-019-004-D09-SP6r MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768D094Q 3-PRIME, mRNA sequence
Length = 635
Score = 48.1 bits (24), Expect = 0.004
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 750 tttaagacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcactt 809
||||||||||| ||||| || || |||| ||||| |||||| || || || || |||
Sbjct: 585 tttaagacaagtatagttttctcgttagaggaagggcctggagtacttttcaaagcgctt 526
Query: 810 gctgtatttgcactgagggacatcaacctcacaaagattgaaag 853
||||| ||||| || || | |||||||||||||||||||||||
Sbjct: 525 gctgtgtttgcccttcggcaaatcaacctcacaaagattgaaag 482
>gb|CB252133.1|CB252133 34-E012999-019-004-D09-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768D094Q 5-PRIME, mRNA sequence
Length = 625
Score = 48.1 bits (24), Expect = 0.004
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 750 tttaagacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcactt 809
||||||||||| ||||| || || |||| ||||| |||||| || || || || |||
Sbjct: 312 tttaagacaagtatagttttctcgttagaggaagggcctggagtacttttcaaagcgctt 371
Query: 810 gctgtatttgcactgagggacatcaacctcacaaagattgaaag 853
||||| ||||| || || | |||||||||||||||||||||||
Sbjct: 372 gctgtgtttgcccttcggcaaatcaacctcacaaagattgaaag 415
>gb|AY050813.1| Arabidopsis thaliana putative P-protein: chorismate mutase,
prephenate dehydratase (At3g07630) mRNA, complete cds
Length = 1514
Score = 48.1 bits (24), Expect = 0.004
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 750 tttaagacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcactt 809
||||||||||| ||||| || || |||| ||||| |||||| || || || || |||
Sbjct: 863 tttaagacaagtatagttttctcgttagaggaagggcctggagtacttttcaaagcgctt 922
Query: 810 gctgtatttgcactgagggacatcaacctcacaaagattgaaag 853
||||| ||||| || || | |||||||||||||||||||||||
Sbjct: 923 gctgtgtttgcccttcggcaaatcaacctcacaaagattgaaag 966
Score = 46.1 bits (23), Expect = 0.017
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 357 agcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaagt 415
||||| ||||| |||||||||||| |||| || || | |||||| |||||||| |||||
Sbjct: 473 agcatccatagaaattatgatcttctgctgcgacacaatttgcatattgtaggcgaagt 531
>gb|AY113967.1| Arabidopsis thaliana putative P-protein (At3g07630) mRNA, complete
cds
Length = 1177
Score = 48.1 bits (24), Expect = 0.004
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 750 tttaagacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcactt 809
||||||||||| ||||| || || |||| ||||| |||||| || || || || |||
Sbjct: 856 tttaagacaagtatagttttctcgttagaggaagggcctggagtacttttcaaagcgctt 915
Query: 810 gctgtatttgcactgagggacatcaacctcacaaagattgaaag 853
||||| ||||| || || | |||||||||||||||||||||||
Sbjct: 916 gctgtgtttgcccttcggcaaatcaacctcacaaagattgaaag 959
Score = 46.1 bits (23), Expect = 0.017
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 357 agcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaagt 415
||||| ||||| |||||||||||| |||| || || | |||||| |||||||| |||||
Sbjct: 466 agcatccatagaaattatgatcttctgctgcgacacaatttgcatattgtaggcgaagt 524
>gb|AY084830.1| Arabidopsis thaliana clone 118932 mRNA, complete sequence
Length = 1486
Score = 48.1 bits (24), Expect = 0.004
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 750 tttaagacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcactt 809
||||||||||| ||||| || || |||| ||||| |||||| || || || || |||
Sbjct: 868 tttaagacaagtatagttttctcgttagaggaagggcctggagtacttttcaaagcgctt 927
Query: 810 gctgtatttgcactgagggacatcaacctcacaaagattgaaag 853
||||| ||||| || || | |||||||||||||||||||||||
Sbjct: 928 gctgtgtttgcccttcggcaaatcaacctcacaaagattgaaag 971
Score = 46.1 bits (23), Expect = 0.017
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 357 agcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaagt 415
||||| ||||| |||||||||||| |||| || || | |||||| |||||||| |||||
Sbjct: 478 agcatccatagaaattatgatcttctgctgcgacacaatttgcatattgtaggcgaagt 536
>emb|BX822651.1|CNS0A5XJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB56ZE11 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1353
Score = 48.1 bits (24), Expect = 0.004
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 750 tttaagacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcactt 809
||||||||||| ||||| || || |||| ||||| |||||| || || || || |||
Sbjct: 849 tttaagacaagtatagttttctcgttagaggaagggcctggagtacttttcaaagcgctt 908
Query: 810 gctgtatttgcactgagggacatcaacctcacaaagattgaaag 853
||||| ||||| || || | |||||||||||||||||||||||
Sbjct: 909 gctgtgtttgcccttcggcaaatcaacctcacaaagattgaaag 952
Score = 46.1 bits (23), Expect = 0.017
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 357 agcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaagt 415
||||| ||||| |||||||||||| |||| || || | |||||| |||||||| |||||
Sbjct: 458 agcatccatagaaattatgatcttctgctgcgacacaatttgcatattgtaggcgaagt 516
>ref|NM_111642.2| Arabidopsis thaliana amino acid binding / prephenate dehydratase
AT3G07630 transcript variant AT3G07630.1 mRNA, complete
cds
Length = 1518
Score = 48.1 bits (24), Expect = 0.004
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 750 tttaagacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcactt 809
||||||||||| ||||| || || |||| ||||| |||||| || || || || |||
Sbjct: 868 tttaagacaagtatagttttctcgttagaggaagggcctggagtacttttcaaagcgctt 927
Query: 810 gctgtatttgcactgagggacatcaacctcacaaagattgaaag 853
||||| ||||| || || | |||||||||||||||||||||||
Sbjct: 928 gctgtgtttgcccttcggcaaatcaacctcacaaagattgaaag 971
Score = 46.1 bits (23), Expect = 0.017
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 357 agcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaagt 415
||||| ||||| |||||||||||| |||| || || | |||||| |||||||| |||||
Sbjct: 478 agcatccatagaaattatgatcttctgctgcgacacaatttgcatattgtaggcgaagt 536
>ref|NM_202520.1| Arabidopsis thaliana amino acid binding / prephenate dehydratase
AT3G07630 transcript variant AT3G07630.2 mRNA, complete
cds
Length = 1503
Score = 48.1 bits (24), Expect = 0.004
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 750 tttaagacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcactt 809
||||||||||| ||||| || || |||| ||||| |||||| || || || || |||
Sbjct: 863 tttaagacaagtatagttttctcgttagaggaagggcctggagtacttttcaaagcgctt 922
Query: 810 gctgtatttgcactgagggacatcaacctcacaaagattgaaag 853
||||| ||||| || || | |||||||||||||||||||||||
Sbjct: 923 gctgtgtttgcccttcggcaaatcaacctcacaaagattgaaag 966
Score = 46.1 bits (23), Expect = 0.017
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 357 agcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaagt 415
||||| ||||| |||||||||||| |||| || || | |||||| |||||||| |||||
Sbjct: 473 agcatccatagaaattatgatcttctgctgcgacacaatttgcatattgtaggcgaagt 531
>gb|N96431.1|N96431 21010 CD4-14 Arabidopsis thaliana cDNA clone F1G2T7, mRNA sequence
Length = 522
Score = 46.1 bits (23), Expect = 0.017
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 357 agcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaagt 415
||||| ||||| |||||||||||| |||| || || | |||||| |||||||| |||||
Sbjct: 49 agcatccatagaaattatgatcttctgctgcgacacaatttgcatattgtaggcgaagt 107
>gb|AI995548.1|AI995548 701674595 A. thaliana, Columbia Col-0, inflorescence-1 Arabidopsis
thaliana cDNA clone 701674595, mRNA sequence
Length = 603
Score = 46.1 bits (23), Expect = 0.017
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 831 atcaacctcacaaagattgaaag 853
|||||||||||||||||||||||
Sbjct: 518 atcaacctcacaaagattgaaag 496
>gb|AV826197.1|AV826197 AV826197 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-10-O22 5',
mRNA sequence
Length = 616
Score = 46.1 bits (23), Expect = 0.017
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 357 agcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaagt 415
||||| ||||| |||||||||||| |||| || || | |||||| |||||||| |||||
Sbjct: 475 agcatccatagaaattatgatcttctgctgcgacacaatttgcatattgtaggcgaagt 533
>gb|AV556099.1|AV556099 AV556099 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ034d11F 3', mRNA sequence
Length = 560
Score = 46.1 bits (23), Expect = 0.017
Identities = 83/103 (80%)
Strand = Plus / Minus
Query: 751 ttaagacaagcatagtcttttcactagaagaaggacctggacagctctttaaggcacttg 810
|||||||||| ||||| || || |||| ||||| |||||| || || || || ||||
Sbjct: 560 ttaagacaagtatagttttctcgttagaggaagggcctggagtacttttcaaagcgcttg 501
Query: 811 ctgtatttgcactgagggacatcaacctcacaaagattgaaag 853
|||| ||||| || || | |||||||||||||||||||||||
Sbjct: 500 ctgtgtttgcccttcggcaaatcaacctcacaaagattgaaag 458
>gb|AC009176.5|ATAC009176 Arabidopsis thaliana chromosome III P1 MLP3 genomic sequence, complete
sequence
Length = 79296
Score = 46.1 bits (23), Expect = 0.017
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 357 agcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaagt 415
||||| ||||| |||||||||||| |||| || || | |||||| |||||||| |||||
Sbjct: 22240 agcatccatagaaattatgatcttctgctgcgacacaatttgcatattgtaggcgaagt 22298
>emb|BX825513.1|CNS0A4ZF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL41ZD10 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1330
Score = 46.1 bits (23), Expect = 0.017
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 357 agcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaagt 415
||||| ||||| |||||||||||| |||| || || | |||||| |||||||| |||||
Sbjct: 458 agcatccatagaaattatgatcttctgctgcgacaaaatttgcatattgtaggcgaagt 516
Score = 44.1 bits (22), Expect = 0.067
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 832 tcaacctcacaaagattgaaag 853
||||||||||||||||||||||
Sbjct: 929 tcaacctcacaaagattgaaag 950
>emb|BX823962.1|CNS0A5OT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH10ZF06 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1406
Score = 46.1 bits (23), Expect = 0.017
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 357 agcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaagt 415
||||| ||||| |||||||||||| |||| || || | |||||| |||||||| |||||
Sbjct: 408 agcatccatagaaattatgatcttctgctgcgacacaatttgcatattgtaggcgaagt 466
>emb|BX822781.1|CNS0A64W Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB63ZG10 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1436
Score = 46.1 bits (23), Expect = 0.017
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 831 atcaacctcacaaagattgaaag 853
|||||||||||||||||||||||
Sbjct: 934 atcaacctcacaaagattgaaag 956
Score = 46.1 bits (23), Expect = 0.017
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 357 agcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaagt 415
||||| ||||| |||||||||||| |||| || || | |||||| |||||||| |||||
Sbjct: 370 agcatccatagaaattatgatcttctgctgcgacacaatttgcatattgtaggcgaagt 428
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 46.1 bits (23), Expect = 0.017
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 357 agcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaagt 415
||||| ||||| |||||||||||| |||| || || | |||||| |||||||| |||||
Sbjct: 2432225 agcatccatagaaattatgatcttctgctgcgacacaatttgcatattgtaggcgaagt 2432283
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 46.1 bits (23), Expect = 0.017
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 357 agcatacataggaattatgatcttttgcttcggcatagtttgcacattgtaggagaagt 415
||||| ||||| |||||||||||| |||| || || | |||||| |||||||| |||||
Sbjct: 2436250 agcatccatagaaattatgatcttctgctgcgacacaatttgcatattgtaggcgaagt 2436308
>gb|CL470317.1|CL470317 SAIL_140_A11.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_140_A11.v1, DNA sequence
Length = 1280
Score = 44.1 bits (22), Expect = 0.067
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 89 cccgccagcgcccgcctccgtccccgccgcccgc 122
|||||| ||||||||| ||| |||||||||||||
Sbjct: 465 cccgcccgcgcccgcccccggccccgccgcccgc 432
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 662,144
Number of Sequences: 1013581
Number of extensions: 662144
Number of successful extensions: 49937
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49272
Number of HSP's gapped (non-prelim): 656
length of query: 1442
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1421
effective length of database: 887,655,671
effective search space: 1261358708491
effective search space used: 1261358708491
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)