BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2950160.2.1
         (846 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CL490667.1|CL490667  SAIL_543_H02.v1 SAIL Collection Arab...    44   0.039
emb|BX945155.1|  Arabidopsis thaliana T-DNA flanking sequenc...    44   0.039
gb|AC012393.5|ATAC012393  Arabidopsis thaliana chromosome II...    44   0.039
dbj|BA000014.8|  Arabidopsis thaliana, chromosome 3, complet...    44   0.039
ref|NC_003074.4|  Arabidopsis thaliana chromosome 3, complet...    44   0.039

>gb|CL490667.1|CL490667 SAIL_543_H02.v1 SAIL Collection Arabidopsis thaliana genomic clone
           SAIL_543_H02.v1, DNA sequence
          Length = 902

 Score = 44.1 bits (22), Expect = 0.039
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 36  ataaataaacaaacagaaaagg 57
           ||||||||||||||||||||||
Sbjct: 170 ataaataaacaaacagaaaagg 191



>emb|BX945155.1| Arabidopsis thaliana T-DNA flanking sequence GK-706A06-025108,
           genomic survey sequence
          Length = 422

 Score = 44.1 bits (22), Expect = 0.039
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 36  ataaataaacaaacagaaaagg 57
           ||||||||||||||||||||||
Sbjct: 257 ataaataaacaaacagaaaagg 236



>gb|AC012393.5|ATAC012393 Arabidopsis thaliana chromosome III BAC F10A16 genomic sequence,
             complete sequence
          Length = 87045

 Score = 44.1 bits (22), Expect = 0.039
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 36    ataaataaacaaacagaaaagg 57
             ||||||||||||||||||||||
Sbjct: 30952 ataaataaacaaacagaaaagg 30973



>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
          Length = 23403063

 Score = 44.1 bits (22), Expect = 0.039
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 36      ataaataaacaaacagaaaagg 57
               ||||||||||||||||||||||
Sbjct: 1722062 ataaataaacaaacagaaaagg 1722083



>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
          Length = 23470805

 Score = 44.1 bits (22), Expect = 0.039
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 36      ataaataaacaaacagaaaagg 57
               ||||||||||||||||||||||
Sbjct: 1726089 ataaataaacaaacagaaaagg 1726110



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 474,149
Number of Sequences: 1013581
Number of extensions: 474149
Number of successful extensions: 35790
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35329
Number of HSP's gapped (non-prelim): 461
length of query: 846
length of database: 908,940,872
effective HSP length: 20
effective length of query: 826
effective length of database: 888,669,252
effective search space: 734040802152
effective search space used: 734040802152
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)