BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950089.2.2
(1044 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL516234.1|CL516234 SAIL_915_F05.v1 SAIL Collection Arab... 42 0.19
gb|T45723.1|T45723 8986 Lambda-PRL2 Arabidopsis thaliana cD... 42 0.19
gb|BP561351.2|BP561351 BP561351 RAFL6 Arabidopsis thaliana ... 42 0.19
gb|BP813131.1|BP813131 BP813131 RAFL19 Arabidopsis thaliana... 42 0.19
gb|BP856129.1|BP856129 BP856129 RAFL21 Arabidopsis thaliana... 42 0.19
gb|BP859440.1|BP859440 BP859440 RAFL21 Arabidopsis thaliana... 42 0.19
gb|AF141661.1| Arabidopsis thaliana AtHVA22c mRNA, complete... 42 0.19
gb|AY065456.1| Arabidopsis thaliana putative AtHVA22c prote... 42 0.19
gb|AY142652.1| Arabidopsis thaliana putative AtHVA22c prote... 42 0.19
emb|AX506032.1| Sequence 727 from Patent WO0216655 42 0.19
gb|AY084473.1| Arabidopsis thaliana clone 108964 mRNA, comp... 42 0.19
emb|BX818107.1|CNS0AE5T Arabidopsis thaliana Full-length cD... 42 0.19
ref|NM_105638.2| Arabidopsis thaliana ATHVA22C AT1G69700 (A... 42 0.19
>gb|CL516234.1|CL516234 SAIL_915_F05.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_915_F05.v1, DNA sequence
Length = 913
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 86 ggaggagcagagagcaagatg 106
|||||||||||||||||||||
Sbjct: 227 ggaggagcagagagcaagatg 207
>gb|T45723.1|T45723 8986 Lambda-PRL2 Arabidopsis thaliana cDNA clone 131G7T7, mRNA
sequence
Length = 453
Score = 42.1 bits (21), Expect = 0.19
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 179 tatcctctatatgcttctgttagagcaatagagacaa 215
|||||||||||||| || || | ||||||||||||||
Sbjct: 160 tatcctctatatgcatcagtgaaagcaatagagacaa 196
>gb|BP561351.2|BP561351 BP561351 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-82-H11 5',
mRNA sequence
Length = 401
Score = 42.1 bits (21), Expect = 0.19
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 179 tatcctctatatgcttctgttagagcaatagagacaa 215
|||||||||||||| || || | ||||||||||||||
Sbjct: 185 tatcctctatatgcatcagtgaaagcaatagagacaa 221
>gb|BP813131.1|BP813131 BP813131 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-05-H18 5',
mRNA sequence
Length = 404
Score = 42.1 bits (21), Expect = 0.19
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 179 tatcctctatatgcttctgttagagcaatagagacaa 215
|||||||||||||| || || | ||||||||||||||
Sbjct: 184 tatcctctatatgcatcagtgaaagcaatagagacaa 220
>gb|BP856129.1|BP856129 BP856129 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-28-P07 5',
mRNA sequence
Length = 395
Score = 42.1 bits (21), Expect = 0.19
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 179 tatcctctatatgcttctgttagagcaatagagacaa 215
|||||||||||||| || || | ||||||||||||||
Sbjct: 182 tatcctctatatgcatcagtgaaagcaatagagacaa 218
>gb|BP859440.1|BP859440 BP859440 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-40-K24 5',
mRNA sequence
Length = 392
Score = 42.1 bits (21), Expect = 0.19
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 179 tatcctctatatgcttctgttagagcaatagagacaa 215
|||||||||||||| || || | ||||||||||||||
Sbjct: 148 tatcctctatatgcatcagtgaaagcaatagagacaa 184
>gb|AF141661.1| Arabidopsis thaliana AtHVA22c mRNA, complete cds
Length = 788
Score = 42.1 bits (21), Expect = 0.19
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 179 tatcctctatatgcttctgttagagcaatagagacaa 215
|||||||||||||| || || | ||||||||||||||
Sbjct: 160 tatcctctatatgcatcagtgaaagcaatagagacaa 196
>gb|AY065456.1| Arabidopsis thaliana putative AtHVA22c protein (At1g69700) mRNA,
complete cds
Length = 826
Score = 42.1 bits (21), Expect = 0.19
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 179 tatcctctatatgcttctgttagagcaatagagacaa 215
|||||||||||||| || || | ||||||||||||||
Sbjct: 182 tatcctctatatgcatcagtgaaagcaatagagacaa 218
>gb|AY142652.1| Arabidopsis thaliana putative AtHVA22c protein (At1g69700) mRNA,
complete cds
Length = 586
Score = 42.1 bits (21), Expect = 0.19
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 179 tatcctctatatgcttctgttagagcaatagagacaa 215
|||||||||||||| || || | ||||||||||||||
Sbjct: 88 tatcctctatatgcatcagtgaaagcaatagagacaa 124
>emb|AX506032.1| Sequence 727 from Patent WO0216655
Length = 555
Score = 42.1 bits (21), Expect = 0.19
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 179 tatcctctatatgcttctgttagagcaatagagacaa 215
|||||||||||||| || || | ||||||||||||||
Sbjct: 88 tatcctctatatgcatcagtgaaagcaatagagacaa 124
>gb|AY084473.1| Arabidopsis thaliana clone 108964 mRNA, complete sequence
Length = 813
Score = 42.1 bits (21), Expect = 0.19
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 179 tatcctctatatgcttctgttagagcaatagagacaa 215
|||||||||||||| || || | ||||||||||||||
Sbjct: 187 tatcctctatatgcatcagtgaaagcaatagagacaa 223
>emb|BX818107.1|CNS0AE5T Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL61ZD02 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 781
Score = 42.1 bits (21), Expect = 0.19
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 179 tatcctctatatgcttctgttagagcaatagagacaa 215
|||||||||||||| || || | ||||||||||||||
Sbjct: 160 tatcctctatatgcatcagtgaaagcaatagagacaa 196
>ref|NM_105638.2| Arabidopsis thaliana ATHVA22C AT1G69700 (ATHVA22C) mRNA, complete
cds
Length = 815
Score = 42.1 bits (21), Expect = 0.19
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 179 tatcctctatatgcttctgttagagcaatagagacaa 215
|||||||||||||| || || | ||||||||||||||
Sbjct: 187 tatcctctatatgcatcagtgaaagcaatagagacaa 223
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 528,225
Number of Sequences: 1013581
Number of extensions: 528225
Number of successful extensions: 41029
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40993
Number of HSP's gapped (non-prelim): 36
length of query: 1044
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1024
effective length of database: 888,669,252
effective search space: 909997314048
effective search space used: 909997314048
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)